genome.fa.s13.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  118  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35437895--35437952	27	2.1	27	81	6	64	31	15	24	29	1.95
35441607--35441675	27	2.6	27	95	0	111	28	28	14	27	1.95
35448788--35448857	27	2.5	28	95	2	124	28	14	27	30	1.95
35448788--35448869	27	3.0	27	85	8	78	29	15	24	30	1.96
35452532--35452601	27	2.6	27	93	2	113	28	30	14	27	1.95
35457494--35457557	28	2.3	27	86	2	92	18	42	20	18	1.90
35459897--35459931	4	8.8	4	100	0	70	25	0	22	51	1.48
35460921--35460947	6	4.5	6	100	0	54	85	0	0	14	0.61
35464495--35464584	32	2.8	33	80	9	105	42	25	3	28	1.71
35465120--35465157	20	1.9	20	88	0	58	34	2	10	52	1.50
35466771--35466839	28	2.5	28	95	2	122	43	27	10	18	1.82
35473087--35473124	20	1.9	20	88	0	58	34	2	10	52	1.50
35474735--35474803	28	2.5	28	92	2	113	43	26	10	20	1.83
35476556--35476858	24	12.6	24	96	0	534	21	17	24	36	1.95
35484555--35484833	24	11.6	24	95	0	477	20	17	25	35	1.95
35493140--35493177	19	2.1	19	90	5	60	39	13	15	31	1.86
35494108--35494409	45	6.9	45	77	8	248	33	25	16	24	1.96
35495507--35495535	14	2.0	15	93	6	51	51	20	0	27	1.47
35497163--35497194	15	2.1	15	100	0	64	37	6	12	43	1.68
35501690--35501925	48	4.9	49	81	6	257	26	27	16	28	1.97
35501690--35501931	96	2.5	96	89	4	353	26	28	16	28	1.97
35502642--35502705	31	2.1	31	96	0	119	23	21	15	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35502916--35503038	24	5.2	24	90	5	180	26	22	21	30	1.99
35503089--35503148	20	3.0	20	90	0	102	33	20	11	35	1.88
35507111--35507466	47	7.6	46	78	8	317	34	16	24	24	1.95
35507032--35507476	234	1.9	234	93	0	773	34	17	24	23	1.96
35507446--35507641	55	3.6	53	81	7	200	34	17	24	22	1.96
35507446--35507652	53	3.8	53	78	9	188	34	17	24	23	1.96
35508245--35508348	48	2.2	48	100	0	208	39	4	21	34	1.74
35513466--35513633	40	4.2	40	82	2	196	25	27	22	25	2.00
35521765--35521929	39	4.2	39	78	10	176	26	26	22	24	2.00
35521756--35521929	78	2.2	79	79	7	194	25	26	22	25	2.00
35525658--35525968	47	6.7	45	73	9	221	33	16	25	24	1.96
35526033--35526083	26	2.0	26	96	0	93	37	19	25	17	1.94
35526059--35526165	53	2.0	53	81	3	126	34	19	26	19	1.96
35530373--35530459	31	2.8	31	89	1	140	24	25	19	31	1.98
35530664--35530772	25	4.4	24	85	6	105	25	22	22	28	1.99
35530677--35530771	25	3.8	26	87	4	126	26	23	24	26	2.00
35570256--35570307	26	2.0	26	96	0	95	28	17	19	34	1.94
35572675--35572811	68	2.0	68	92	0	229	35	8	26	30	1.85
35572742--35573042	48	6.3	48	91	0	440	34	7	26	31	1.84
35573087--35573172	37	2.3	37	95	0	154	24	19	32	23	1.98
35575049--35575367	40	7.8	40	85	6	408	26	20	27	26	1.99
35575076--35575331	88	3.0	87	85	10	368	25	19	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35575164--35575367	79	2.6	80	89	1	302	25	20	28	25	1.99
35578164--35578464	48	6.3	48	92	0	458	34	7	26	30	1.85
35578097--35578233	68	2.0	68	91	0	220	34	8	27	30	1.85
35578511--35578594	37	2.3	37	95	0	150	25	19	33	22	1.97
35581050--35581075	12	2.2	12	100	0	52	50	7	23	19	1.73
35584478--35584644	40	4.2	40	82	2	185	24	26	22	26	2.00
35589488--35589535	16	2.8	17	78	15	55	25	8	29	37	1.85
35593763--35593929	40	4.2	40	82	2	185	24	26	22	26	2.00
35601717--35601883	40	4.2	40	82	2	185	24	26	22	26	2.00
35604400--35604563	71	2.3	71	100	0	328	18	28	17	35	1.94
35604400--35604597	71	2.8	70	91	3	258	20	28	17	33	1.95
35611973--35612136	71	2.3	71	100	0	328	18	28	17	35	1.94
35611973--35612170	71	2.8	70	91	3	258	20	28	17	33	1.95
35615769--35615959	40	4.8	40	88	0	247	26	23	26	24	2.00
35615770--35615987	40	5.4	39	84	6	222	26	22	26	24	2.00
35615769--35615987	120	1.8	121	84	3	298	26	23	26	24	2.00
35615923--35616008	40	2.2	40	81	8	95	30	24	23	22	1.99
35615767--35615990	80	2.8	79	78	4	252	27	23	25	24	2.00
35617328--35617454	40	2.8	47	80	18	178	38	14	3	42	1.65
35617363--35617457	40	2.4	40	98	0	181	38	13	4	43	1.64
35622332--35622428	40	2.4	40	84	0	131	27	25	16	29	1.97
35639586--35639719	48	2.8	48	89	0	187	25	17	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35642452--35642554	37	2.8	37	95	0	179	23	32	21	23	1.98
35642695--35643178	48	10.0	48	94	0	842	31	26	6	35	1.82
35663866--35663906	21	2.0	20	85	4	55	24	17	7	51	1.70
35666191--35666361	27	6.3	27	85	5	229	39	8	22	28	1.84
35666191--35666361	54	3.2	54	95	0	297	39	8	22	28	1.84
35667735--35667777	15	2.9	15	89	0	59	46	2	44	6	1.43
35672030--35672200	40	4.3	39	77	10	159	28	21	26	23	1.99
35679949--35680119	40	4.3	39	77	10	159	28	21	26	23	1.99
35686522--35686564	18	2.4	18	84	3	61	9	34	32	23	1.87
35687873--35687982	28	4.0	27	84	6	123	37	20	23	19	1.94
35687873--35687982	56	2.0	54	83	3	139	37	20	23	19	1.94
35692243--35692333	28	3.2	28	89	3	121	36	20	23	19	1.95
35694331--35694438	27	3.9	27	85	10	139	36	22	24	17	1.95
35694328--35694438	55	2.0	54	87	5	161	36	21	24	17	1.94
35700829--35701036	40	5.2	40	87	6	253	23	22	27	26	1.99
35707632--35707837	40	5.2	40	88	4	267	22	21	28	26	1.99
35711588--35711700	27	4.1	27	83	10	133	37	23	23	16	1.94
35711592--35711699	55	2.0	54	87	5	155	37	22	22	17	1.94
35725077--35725103	12	2.2	12	100	0	54	25	44	22	7	1.79
35726107--35726149	21	2.0	21	95	0	77	23	16	39	20	1.92
35726107--35726157	21	2.4	21	90	0	66	25	17	37	19	1.94
35729591--35729710	38	3.1	38	77	13	120	23	20	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35729607--35729731	38	3.2	38	78	4	126	22	20	25	31	1.98
35748518--35748618	28	3.5	30	82	6	118	29	14	26	28	1.95
35748547--35748622	29	2.7	28	76	13	75	30	14	26	28	1.95
35756369--35756469	28	3.5	30	82	6	118	29	14	26	28	1.95
35756398--35756473	29	2.7	28	76	13	75	30	14	26	28	1.95
35761022--35761258	43	5.7	42	76	7	189	31	24	16	28	1.96
35761276--35761392	48	2.4	48	74	5	112	26	23	20	29	1.99
35761481--35761530	24	2.0	25	96	3	93	28	20	20	32	1.97
35761481--35761541	24	2.5	24	86	5	61	31	19	18	31	1.96
35761545--35761573	6	4.8	6	100	0	58	48	17	0	34	1.47
35767606--35767702	48	2.1	48	88	3	144	35	14	23	26	1.93
35770955--35771052	39	2.5	39	94	0	169	23	28	23	24	2.00
35776775--35776858	30	2.8	31	75	8	84	25	27	13	34	1.93
35796492--35796531	19	2.1	19	85	0	53	42	12	10	35	1.76
35799057--35799332	48	5.8	49	77	8	234	25	29	19	25	1.98
35799114--35799283	93	1.8	92	85	8	238	25	29	20	24	1.99
35799013--35799329	141	2.2	142	83	8	389	25	29	19	25	1.98
35808872--35808945	29	2.6	29	95	0	139	27	31	14	27	1.95
35808813--35808945	58	2.3	58	80	2	133	24	33	17	24	1.96
35816663--35816775	25	4.6	25	81	7	133	23	25	20	30	1.99
35825429--35825498	28	2.5	28	90	4	106	27	15	27	30	1.96
35835620--35835718	28	3.5	28	87	4	119	27	15	27	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35837211--35837341	65	2.0	65	96	0	244	41	17	16	25	1.89
35837344--35837394	26	2.0	26	84	7	68	27	15	17	39	1.90
35837344--35837400	26	2.2	26	81	9	62	28	19	15	36	1.92
35837647--35837685	20	2.0	20	90	10	62	25	0	0	74	0.82
35838675--35838760	42	2.0	42	90	0	136	59	9	24	6	1.53
35842198--35842415	45	4.9	45	93	1	368	27	29	20	23	1.99
35852365--35852589	49	4.5	50	84	2	265	28	26	18	27	1.98
35852352--35852595	99	2.5	100	81	2	285	27	26	18	27	1.98
35856117--35856153	18	2.1	18	94	0	65	51	0	24	24	1.49
35856117--35856153	12	3.1	12	84	0	56	51	0	24	24	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410