Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  180  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55020571--55020708
44
3.2
42
76
11
120
28
26
18
26
1.98
55020553--55020709
43
3.6
44
75
4
158
28
26
19
26
1.99
55023304--55023328
13
1.9
13
100
0
50
16
24
44
16
1.86
55028603--55028661
30
1.9
31
82
3
75
37
20
25
16
1.93
55028625--55028671
20
2.3
20
74
0
58
36
19
23
21
1.95
55034307--55034388
42
2.0
42
97
0
155
32
24
14
28
1.94
55036978--55037066
43
2.1
43
83
8
110
31
30
15
22
1.95
55039552--55039727
46
3.8
45
79
7
201
22
20
28
28
1.98
55039549--55039720
93
1.8
93
93
2
301
22
20
29
27
1.99
55045045--55045252
40
5.2
40
81
2
184
25
23
25
25
2.00
55045089--55045252
80
2.0
80
84
4
215
23
25
28
23
2.00
55046953--55047139
30
6.4
30
84
11
253
48
14
17
19
1.82
55046953--55047139
85
2.2
85
97
0
347
48
14
17
19
1.82
55046953--55047114
6
26.8
6
78
15
174
48
14
17
19
1.80
55047271--55047372
27
3.8
26
87
5
123
36
21
22
19
1.95
55047530--55047594
22
3.0
22
80
8
78
33
23
23
20
1.97
55048019--55048322
27
11.3
27
87
1
378
23
20
20
35
1.96
55048307--55048656
27
13.1
27
78
8
164
32
8
24
34
1.85
55048460--55048632
81
2.1
81
90
2
267
38
8
25
28
1.84
55048460--55048632
54
3.2
54
88
1
267
38
8
25
28
1.84
55048460--55048677
81
2.7
81
84
1
222
37
7
23
31
1.84
55051706--55051861
47
3.3
47
81
4
183
33
8
28
28
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55051932--55052016
40
2.2
40
84
2
109
17
22
31
28
1.97
55053985--55054062
30
2.6
29
77
16
79
12
17
14
55
1.70
55053994--55054073
15
5.4
15
79
7
83
11
17
13
57
1.65
55056452--55056627
46
3.8
46
78
4
201
22
19
28
29
1.98
55056449--55056618
93
1.8
93
94
0
304
22
20
28
28
1.99
55062489--55062515
2
13.5
2
100
0
54
48
0
0
51
1.00
55063752--55063787
11
3.3
11
92
0
54
38
19
25
16
1.92
55063750--55063801
22
2.4
22
80
0
59
34
17
26
21
1.95
55066500--55066524
12
2.1
12
100
0
50
32
28
8
32
1.86
55067067--55067109
16
2.8
16
82
13
54
39
2
16
41
1.61
55067259--55067650
56
7.0
56
90
0
586
29
13
21
34
1.92
55067262--55067650
168
2.3
168
94
0
679
30
13
21
34
1.92
55072433--55072471
18
2.1
19
85
4
53
7
23
2
66
1.30
55072507--55072531
12
2.1
12
100
0
50
8
16
0
76
1.02
55072533--55072564
12
2.7
12
100
0
64
25
15
12
46
1.81
55072612--55072668
5
11.0
5
75
20
55
1
17
3
77
1.00
55072612--55072668
16
3.7
14
82
15
60
1
17
3
77
1.00
55072612--55072673
21
3.0
21
75
15
58
1
16
4
77
1.02
55076585--55076632
24
2.0
24
95
0
87
45
18
4
31
1.68
55076590--55076640
24
2.2
23
80
16
61
41
23
3
31
1.73
55078080--55078254
46
3.8
45
78
11
185
28
28
21
21
1.99
55078090--55078259
93
1.8
93
90
0
277
27
28
21
21
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55078131--55078274
46
3.1
46
69
18
118
30
27
20
22
1.98
55080168--55080256
30
3.0
30
80
8
101
57
15
16
10
1.65
55080168--55080247
15
5.4
15
80
7
92
58
13
17
10
1.62
55080179--55080256
15
5.2
15
78
9
79
56
15
16
11
1.67
55083161--55083333
46
3.7
46
76
10
163
30
26
19
23
1.98
55086751--55086848
30
3.3
30
73
0
88
29
15
26
28
1.96
55089602--55089645
20
2.2
20
84
12
54
77
4
18
0
0.94
55092786--55092825
19
2.1
19
85
0
53
25
35
17
22
1.95
55099037--55099146
24
4.5
24
73
2
76
26
29
18
26
1.98
55104731--55104898
40
4.2
40
80
3
187
24
22
27
26
2.00
55106799--55106889
45
2.0
45
100
0
182
47
13
15
24
1.81
55110581--55110605
13
1.9
13
100
0
50
8
32
36
24
1.84
55117879--55117940
22
2.8
22
77
0
61
38
17
20
22
1.93
55119790--55119961
93
1.8
93
96
0
317
27
29
21
20
1.98
55119783--55119958
46
3.8
46
79
12
216
28
29
21
20
1.98
55127350--55127521
93
1.8
93
96
0
317
27
29
21
20
1.98
55127343--55127518
46
3.8
46
79
12
216
28
29
21
20
1.98
55129946--55130122
31
5.7
31
93
0
302
29
25
15
28
1.96
55130146--55130279
42
3.2
42
97
0
250
32
19
15
32
1.93
55130414--55130471
25
2.4
24
83
11
73
25
22
20
31
1.98
55130430--55130496
25
2.7
26
86
4
84
25
22
26
25
2.00
55130697--55130753
27
2.1
27
83
6
71
22
24
21
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55130815--55131056
27
8.9
27
75
7
105
31
9
18
40
1.83
55130765--55131061
54
5.5
54
71
9
165
30
11
18
39
1.85
55131060--55131254
27
7.2
27
88
2
266
38
7
23
30
1.82
55131060--55131254
81
2.4
81
90
1
293
38
7
23
30
1.82
55133519--55133633
31
3.7
31
92
1
187
29
25
16
28
1.97
55133657--55133790
42
3.2
42
97
0
250
32
19
15
32
1.93
55134933--55135029
28
3.5
28
91
4
153
20
8
25
45
1.79
55135650--55135711
27
2.3
27
91
0
97
27
16
16
40
1.89
55135667--55135819
54
2.8
54
87
2
164
29
9
19
41
1.82
55135694--55135824
27
4.9
27
85
1
174
31
6
19
41
1.78
55135694--55135819
54
2.3
54
93
0
207
30
7
19
42
1.78
55135665--55135824
81
2.0
81
86
4
225
31
8
19
40
1.82
55135691--55135844
81
1.9
81
81
2
184
31
7
21
39
1.80
55137045--55137128
25
3.4
25
73
15
59
26
21
22
29
1.99
55137061--55137127
25
2.7
26
81
4
84
23
22
26
26
2.00
55138055--55138162
27
3.9
28
79
11
107
30
7
18
43
1.77
55138059--55138180
27
4.4
27
77
9
95
29
7
19
43
1.78
55138052--55138188
56
2.5
54
79
8
134
30
8
18
42
1.80
55138118--55138268
27
5.6
28
83
9
154
26
7
23
42
1.81
55138145--55138310
54
3.1
53
79
6
174
27
10
22
39
1.87
55138118--55138301
81
2.3
80
80
9
196
27
10
21
40
1.86
55138143--55138268
27
4.7
27
86
2
164
26
7
23
41
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55138139--55138308
27
6.3
27
76
13
127
27
11
22
38
1.88
55138300--55138497
27
7.3
27
82
4
202
40
7
23
29
1.81
55138300--55138497
81
2.4
81
88
1
290
40
7
23
29
1.81
55138300--55138497
54
3.7
54
84
4
238
40
7
23
29
1.81
55138343--55138517
81
2.2
81
88
0
251
39
8
21
30
1.82
55139531--55139603
28
2.7
27
75
8
67
28
9
10
50
1.69
55139791--55139876
43
2.0
42
88
6
129
23
19
22
34
1.96
55144633--55144723
40
2.3
40
100
0
182
23
24
26
26
2.00
55148374--55148398
8
3.1
8
100
0
50
52
0
24
24
1.48
55148766--55148878
44
2.6
43
78
9
115
22
16
27
33
1.95
55151956--55152313
130
2.8
128
82
2
394
28
18
18
35
1.94
55160517--55160802
47
6.1
47
87
0
396
32
11
29
26
1.91
55160544--55160619
23
3.2
25
62
24
63
28
13
34
23
1.92
55160538--55160793
141
1.8
139
95
1
467
32
12
29
25
1.92
55160685--55160760
25
3.2
25
63
30
65
30
13
34
22
1.92
55160539--55160843
94
3.3
91
81
9
323
32
11
28
26
1.92
55161005--55161148
37
3.9
37
93
0
236
22
19
32
25
1.97
55164546--55164706
43
3.7
43
69
13
125
26
17
24
32
1.97
55165359--55165420
27
2.3
26
91
2
79
40
3
29
27
1.72
55172374--55172430
27
2.1
27
93
0
96
52
17
7
22
1.68
55173168--55173355
55
3.4
55
87
0
259
35
22
12
29
1.91
55175359--55175547
56
3.4
56
90
0
306
35
22
14
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55176817--55177162
177
2.0
177
90
0
548
23
16
26
32
1.96
55180821--55180884
31
2.1
31
96
0
119
23
21
15
39
1.92
55181075--55181191
24
4.9
24
91
7
177
25
22
23
29
1.99
55181074--55181191
47
2.5
46
90
6
175
25
22
22
29
1.99
55181238--55181291
11
5.4
11
70
20
55
31
20
11
37
1.88
55181238--55181296
19
3.0
20
95
5
111
33
20
10
35
1.86
55181339--55181386
25
1.9
25
86
0
69
25
16
25
33
1.96
55185783--55185846
31
2.1
31
96
0
119
23
21
15
39
1.92
55186038--55186178
24
5.9
24
91
5
207
26
22
22
28
1.99
55186038--55186178
47
3.0
48
90
6
207
26
22
22
28
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410