Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  342  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105559857--105559960
43
2.4
43
84
6
131
28
15
24
31
1.95
105570250--105570344
48
2.0
47
93
2
163
42
18
15
23
1.89
105572075--105572115
2
20.5
2
100
0
82
48
0
0
51
1.00
105573650--105573757
26
4.2
26
92
0
180
32
6
25
36
1.81
105578351--105578624
48
5.7
48
79
7
245
29
16
28
25
1.97
105578396--105578619
96
2.3
95
84
6
274
31
16
28
24
1.96
105580558--105580675
43
2.8
41
76
11
105
26
16
25
32
1.96
105582310--105582403
42
2.2
42
88
3
136
32
26
20
20
1.97
105582321--105582410
42
2.1
42
91
0
144
32
24
17
25
1.97
105585397--105585440
22
2.0
22
100
0
88
22
13
18
45
1.84
105589038--105589101
31
2.1
31
96
0
119
23
21
15
39
1.92
105589307--105589387
23
3.4
24
89
6
121
25
24
19
29
1.99
105589438--105589497
20
3.0
20
90
0
102
31
20
11
36
1.88
105589540--105589587
25
1.9
25
86
0
69
25
16
25
33
1.96
105592608--105592844
48
4.9
47
80
5
233
29
18
26
25
1.98
105592618--105592844
97
2.4
96
85
0
292
30
18
26
25
1.98
105596872--105596905
17
2.1
17
88
5
52
23
0
0
76
0.79
105599691--105599738
25
1.9
25
86
0
69
33
25
16
25
1.96
105599782--105599840
20
3.0
20
97
0
109
37
10
20
32
1.86
105599786--105599840
11
5.4
11
70
16
55
38
10
20
30
1.87
105599891--105600042
24
6.0
24
80
13
153
29
21
23
26
1.99
105599938--105599986
16
3.1
16
77
11
64
32
20
24
22
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105600234--105600297
31
2.1
31
96
0
119
39
15
21
23
1.92
105607452--105607499
25
1.9
25
86
0
69
33
25
16
25
1.96
105607543--105607601
20
3.0
20
97
0
109
37
10
20
32
1.86
105607547--105607601
11
5.4
11
70
16
55
38
10
20
30
1.87
105607652--105607841
24
8.0
24
92
4
296
28
22
22
26
1.99
105607652--105607841
47
4.0
48
92
4
296
28
22
22
26
1.99
105607652--105607842
71
2.7
71
91
4
296
29
22
21
26
1.99
105608033--105608127
31
3.1
31
98
0
181
38
15
22
23
1.92
105610026--105610052
2
13.5
2
100
0
54
51
0
0
48
1.00
105611132--105611315
67
2.8
64
80
7
210
23
29
16
29
1.97
105612049--105612109
30
2.0
30
83
0
77
31
22
8
37
1.84
105614436--105614475
13
3.2
13
89
3
55
25
2
2
70
1.13
105620457--105620613
25
6.2
25
94
5
248
36
23
5
34
1.77
105621776--105621836
30
2.0
30
83
0
77
31
22
8
37
1.84
105630416--105630575
26
6.2
26
96
1
270
34
5
23
36
1.78
105635076--105635109
17
1.9
18
88
5
52
73
0
2
23
0.97
105636546--105636585
13
3.2
13
89
3
55
70
2
2
25
1.13
105639622--105639826
66
3.2
64
79
7
218
31
17
29
22
1.96
105642790--105642883
31
3.1
31
96
1
172
23
22
14
39
1.91
105643073--105643243
24
7.0
24
86
9
211
28
22
21
28
1.99
105643293--105643349
18
3.0
20
87
12
93
33
21
10
35
1.87
105643392--105643439
25
1.9
25
86
0
69
25
16
25
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105645810--105645981
67
2.6
66
81
7
170
31
16
29
22
1.96
105645834--105646017
67
2.8
64
78
8
203
28
16
30
23
1.96
105657856--105657889
18
2.0
18
88
11
54
38
17
26
17
1.92
105661639--105661663
13
1.9
13
100
0
50
68
8
8
16
1.38
105663652--105663684
16
2.1
16
94
0
57
60
3
0
36
1.12
105669378--105669418
21
2.0
21
85
0
55
56
9
9
24
1.62
105673591--105673774
48
3.8
48
90
2
289
29
22
26
21
1.99
105673593--105673822
96
2.4
95
84
6
286
30
21
26
20
1.98
105673593--105673854
48
5.5
48
81
6
253
30
21
26
21
1.98
105678954--105679011
26
2.2
26
93
0
98
34
5
24
36
1.78
105681810--105681839
11
2.9
10
90
9
51
23
10
10
56
1.62
105684673--105684756
26
3.2
26
96
0
150
33
4
25
36
1.77
105689541--105689623
26
3.3
26
84
3
107
15
26
24
33
1.95
105698882--105698939
22
2.7
22
78
7
57
60
0
6
32
1.23
105698948--105699567
294
2.1
294
80
6
693
41
8
11
38
1.72
105699084--105699740
294
2.2
289
79
9
677
42
8
10
38
1.70
105711315--105711358
19
2.4
19
80
3
54
72
4
4
18
1.19
105718101--105718141
2
21.0
2
95
5
75
48
0
0
51
1.00
105729655--105729690
18
2.0
18
94
0
63
50
13
11
25
1.75
105732338--105732365
11
2.5
11
100
0
56
25
7
10
57
1.58
105739931--105739961
9
3.4
9
95
0
53
25
32
6
35
1.82
105741893--105742094
101
2.0
101
97
0
377
41
19
9
28
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105746532--105746735
102
2.0
102
99
0
399
42
8
5
43
1.59
105748173--105748278
53
2.0
53
98
0
203
29
13
21
35
1.91
105753093--105753158
24
3.1
20
74
22
55
53
6
0
40
1.26
105753100--105753159
20
2.8
20
76
16
59
53
6
0
40
1.27
105753100--105753168
21
3.2
21
76
17
61
53
7
0
39
1.29
105753653--105753691
19
2.0
20
90
5
62
38
2
0
58
1.12
105758108--105758222
44
2.6
44
78
9
137
25
17
25
32
1.97
105760398--105760465
33
2.1
33
97
0
127
38
14
20
26
1.91
105763718--105763761
21
2.1
22
83
8
56
72
18
2
6
1.17
105763718--105763761
20
2.1
21
83
4
54
72
18
2
6
1.17
105766525--105766574
22
2.3
21
80
10
57
32
28
18
22
1.97
105767988--105768242
55
4.8
53
76
11
195
35
16
25
21
1.95
105767988--105768195
55
3.9
54
78
11
221
35
16
25
22
1.95
105767996--105768195
108
1.8
110
86
6
291
34
16
26
23
1.95
105775557--105775811
55
4.8
53
79
8
236
35
17
25
21
1.95
105775564--105775764
108
1.8
110
87
4
300
34
17
25
21
1.96
105779865--105779899
2
17.5
2
100
0
70
48
0
0
51
1.00
105784436--105784480
21
2.1
21
83
4
54
62
6
0
31
1.21
105784559--105784597
9
4.4
9
83
3
53
25
0
2
71
0.98
105785802--105785827
4
6.5
4
100
0
52
23
0
0
76
0.78
105792092--105792218
65
1.9
67
84
6
170
43
17
18
20
1.88
105794161--105794209
13
3.9
12
84
7
62
38
22
2
36
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105804718--105804747
5
6.0
5
92
0
51
0
23
0
76
0.78
105804704--105804747
15
2.9
15
86
0
52
2
25
0
72
0.96
105808385--105808463
15
5.3
14
73
18
61
35
2
0
62
1.09
105808398--105808463
16
3.7
18
75
20
50
36
1
0
62
1.05
105808399--105808497
30
3.3
29
76
12
85
35
4
0
60
1.16
105808396--105808464
20
3.5
20
71
18
63
36
1
0
62
1.04
105808336--105808464
23
5.4
24
70
16
81
35
4
0
58
1.24
105808476--105808508
12
2.7
13
86
13
52
33
6
0
60
1.21
105808444--105808513
30
2.3
30
85
2
86
34
5
0
60
1.21
105808912--105808974
17
3.7
17
75
14
67
36
1
0
61
1.05
105808816--105808984
87
2.0
85
80
12
190
35
7
0
56
1.31
105810629--105810685
23
2.6
21
78
13
69
59
15
3
21
1.51
105812221--105812260
17
2.4
17
87
8
55
40
0
0
60
0.97
105815216--105815290
38
2.0
38
94
0
132
29
17
14
38
1.89
105818447--105818477
15
2.0
16
93
6
55
38
12
0
48
1.42
105819300--105819327
9
3.1
9
100
0
56
0
42
0
57
0.99
105819392--105819428
2
19.0
2
94
5
67
51
0
0
48
1.00
105823544--105823577
15
2.2
16
89
5
52
73
8
17
0
1.08
105827642--105827702
19
3.1
19
90
7
86
40
8
6
44
1.60
105827713--105827769
27
2.1
27
90
6
89
40
5
7
47
1.53
105829129--105829165
18
2.0
20
89
10
60
56
8
2
32
1.43
105829523--105829575
17
3.1
16
77
17
54
35
5
1
56
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105830584--105830780
67
2.9
67
93
0
331
39
5
19
36
1.75
105834209--105834249
3
13.7
3
100
0
82
31
0
0
68
0.90
105838670--105838759
38
2.4
38
96
0
162
28
16
18
35
1.93
105838819--105839028
43
5.0
41
84
4
165
30
20
14
34
1.93
105838877--105839062
43
4.4
43
88
1
250
29
20
14
35
1.92
105838819--105839062
86
2.9
84
83
6
273
29
19
15
36
1.92
105843742--105843800
17
3.5
17
83
0
73
16
20
28
33
1.95
105851381--105851415
18
1.9
18
94
0
61
28
14
17
40
1.88
105851455--105851538
41
2.0
41
86
6
116
16
20
17
45
1.86
105851468--105851540
21
3.5
21
77
3
76
13
19
19
47
1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410