genome.fa.s13.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  108  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31889103--31889241	73	1.9	74	95	1	253	23	19	32	24	1.98
31890516--31890952	40	11.0	40	94	0	734	21	21	28	27	1.99
31892611--31892812	80	2.5	80	83	4	230	25	25	22	26	2.00
31892611--31892814	40	5.1	40	80	4	207	25	25	22	26	2.00
31897721--31897956	47	5.0	48	91	4	376	34	6	27	31	1.82
31897721--31897991	142	1.9	138	86	8	377	34	7	27	30	1.84
31898101--31898199	37	2.7	37	96	0	180	24	19	32	24	1.97
31899474--31900027	40	13.7	40	92	4	896	21	21	29	27	1.99
31899854--31900027	79	2.2	79	95	2	314	21	22	29	26	1.99
31900203--31900253	25	2.0	25	81	7	59	35	13	29	21	1.92
31903459--31903796	48	7.0	48	91	2	545	34	5	28	31	1.81
31903937--31904039	37	2.8	37	98	0	197	24	20	32	23	1.98
31914635--31914677	22	2.0	22	81	9	52	34	25	16	23	1.95
31919128--31919287	39	4.1	39	79	8	162	30	25	18	25	1.98
31921938--31922185	40	6.2	40	82	4	142	24	25	23	26	2.00
31921964--31922184	80	2.7	79	82	2	253	24	25	23	26	2.00
31932479--31932816	24	14.1	24	96	0	606	20	17	24	36	1.94
31940905--31941102	71	2.8	70	92	3	294	33	17	28	20	1.95
31940971--31941088	41	3.1	41	60	28	98	32	17	28	21	1.96
31940939--31941102	71	2.3	71	100	0	328	35	17	28	18	1.94
31948435--31948632	71	2.8	70	92	3	294	33	17	28	20	1.95
31948501--31948618	41	3.1	41	60	28	98	32	17	28	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31948469--31948632	71	2.3	71	100	0	328	35	17	28	18	1.94
31955477--31955625	39	3.8	39	81	9	169	30	24	18	26	1.97
31955481--31955625	79	1.8	78	89	1	227	31	24	17	27	1.97
31959032--31959145	27	4.2	27	80	0	111	35	14	22	28	1.93
31959068--31959184	27	4.3	27	78	6	85	37	11	23	27	1.90
31959136--31959190	27	2.0	27	85	0	74	34	7	25	32	1.83
31961323--31961504	27	6.8	27	86	1	242	24	14	18	43	1.87
31961323--31961504	80	2.3	81	86	3	253	24	14	18	43	1.87
31965942--31966017	22	3.3	22	67	16	64	30	10	31	27	1.90
31965920--31966092	47	3.7	47	93	0	283	32	6	31	28	1.84
31965934--31966006	25	3.0	25	66	18	73	31	8	30	30	1.86
31968073--31968372	43	7.0	43	96	0	519	14	22	30	32	1.93
31972069--31972144	22	3.3	22	67	16	64	30	10	31	27	1.90
31972047--31972219	47	3.7	47	93	0	283	32	6	31	28	1.84
31972061--31972133	25	3.0	25	66	18	73	31	8	30	30	1.86
31975217--31975309	27	3.5	26	86	2	123	25	13	18	41	1.88
31979005--31979134	27	4.9	27	84	1	154	26	16	19	38	1.92
31979005--31979132	53	2.4	54	82	1	150	26	16	18	38	1.92
31980926--31980972	22	2.1	22	96	0	85	29	8	17	44	1.78
31981425--31981523	30	3.4	30	81	2	112	30	20	26	23	1.98
31983042--31983259	26	8.2	27	76	8	164	36	11	24	27	1.90
31996629--31996803	46	3.8	45	77	13	203	21	20	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31996626--31996796	93	1.8	93	93	0	297	21	20	29	29	1.98
31998822--31998891	27	2.6	27	97	2	131	31	27	12	28	1.93
32006612--32006681	27	2.6	27	97	2	131	31	27	12	28	1.93
32019038--32019136	49	2.0	49	90	3	155	22	13	23	41	1.88
32023185--32023285	28	3.5	28	86	6	114	29	26	13	29	1.94
32029334--32029518	93	2.0	93	93	6	324	17	23	29	29	1.97
32031096--32031196	28	3.5	28	86	6	114	29	26	13	29	1.94
32039054--32039154	28	3.5	28	86	6	114	29	26	13	29	1.94
32045985--32046023	21	1.9	20	84	5	51	30	2	20	46	1.64
32046520--32046655	40	3.4	40	82	8	145	26	13	21	38	1.90
32046506--32046693	80	2.3	80	85	3	254	25	14	22	38	1.92
32046549--32046693	40	3.6	40	85	1	202	25	13	23	37	1.92
32050124--32050160	16	2.3	16	95	0	65	29	10	16	43	1.82
32053585--32053654	27	2.6	27	95	2	122	30	27	14	28	1.95
32056921--32056975	26	2.1	26	100	0	110	36	20	21	21	1.95
32061427--32061496	27	2.6	27	95	2	122	30	27	14	28	1.95
32074283--32074318	9	3.9	9	92	7	63	55	8	0	36	1.30
32074283--32074318	19	1.9	18	94	5	63	55	8	0	36	1.30
32074851--32074897	18	2.4	20	82	13	62	46	12	8	31	1.72
32083587--32083758	43	4.0	42	73	17	147	31	24	18	25	1.97
32083595--32083743	43	3.5	43	81	8	153	30	24	18	26	1.98
32090764--32090935	93	1.8	93	96	0	317	27	30	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32090756--32090931	46	3.8	46	81	10	232	28	29	21	20	1.98
32093315--32093402	29	3.0	29	80	8	97	56	15	17	10	1.66
32093315--32093393	15	5.4	15	77	10	83	58	13	17	10	1.63
32093326--32093402	15	5.2	15	75	9	77	55	15	16	11	1.68
32096349--32096520	93	1.8	93	96	0	317	27	30	22	20	1.98
32096341--32096516	46	3.8	46	81	10	232	28	29	21	20	1.98
32098899--32098987	30	3.0	30	80	8	101	57	15	16	10	1.65
32098899--32098978	15	5.4	15	80	7	92	58	13	17	10	1.62
32098910--32098987	15	5.2	15	78	9	79	56	15	16	11	1.67
32101927--32102098	93	1.8	93	96	0	317	27	30	22	20	1.98
32101919--32102094	46	3.8	46	81	10	232	28	29	21	20	1.98
32104274--32104362	30	3.0	30	80	8	101	57	15	16	10	1.65
32104274--32104353	15	5.4	15	80	7	92	58	13	17	10	1.62
32104285--32104362	15	5.2	15	78	9	79	56	15	16	11	1.67
32107103--32107274	93	1.8	93	96	0	317	27	30	22	20	1.98
32107095--32107270	46	3.8	46	81	10	232	28	29	21	20	1.98
32109650--32109738	30	3.0	30	80	8	101	57	15	16	10	1.65
32109650--32109729	15	5.4	15	80	7	92	58	13	17	10	1.62
32109661--32109738	15	5.2	15	78	9	79	56	15	16	11	1.67
32112685--32112856	93	1.8	93	96	0	317	27	30	22	20	1.98
32112677--32112852	46	3.8	46	81	10	232	28	29	21	20	1.98
32115245--32115319	29	2.6	29	86	0	105	26	17	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32115245--32115353	57	1.9	57	81	5	130	26	14	29	29	1.95
32115245--32115351	29	3.7	29	77	3	92	27	14	28	28	1.96
32117494--32117652	43	3.7	43	80	5	187	32	25	14	28	1.95
32120877--32121020	46	3.1	46	70	14	125	29	27	20	22	1.98
32128766--32128895	49	2.7	48	85	8	167	24	26	19	29	1.98
32129786--32129810	12	2.1	12	100	0	50	60	16	8	16	1.58
32135430--32135454	13	1.9	13	100	0	50	0	32	20	48	1.50
32136403--32136745	49	7.3	47	76	12	251	24	29	18	27	1.98
32137460--32137484	12	2.1	12	100	0	50	60	16	8	16	1.58
32139510--32139616	43	2.5	43	83	6	119	23	17	25	33	1.96
32142938--32143013	37	2.1	36	83	11	93	39	2	3	53	1.33
32143250--32143299	25	2.0	25	84	11	66	38	6	14	42	1.70
32143250--32143297	23	2.0	25	84	12	64	39	6	14	39	1.71
32146874--32146909	3	12.0	3	100	0	72	66	0	0	33	0.92
32147913--32148000	20	4.4	20	70	0	59	14	25	19	40	1.89
32150988--32151172	40	4.7	40	81	7	191	24	22	27	25	2.00
32150988--32151167	79	2.3	80	81	7	206	24	23	27	24	2.00
32151041--32151205	79	2.1	79	80	6	183	26	21	27	25	1.99
32159032--32159214	79	2.3	81	84	7	232	24	22	27	25	2.00
32159033--32159216	40	4.6	40	83	9	216	23	22	28	25	2.00
32159085--32159249	79	2.1	79	84	6	210	25	21	27	25	1.99
32162026--32162779	374	2.0	379	95	3	1382	31	13	25	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32163751--32163934	39	4.6	41	82	10	222	23	22	28	25	1.99
32163788--32163967	79	2.3	78	82	7	213	26	20	27	25	1.99
32171746--32171929	40	4.6	41	82	10	222	23	22	28	25	1.99
32177983--32178141	40	4.0	40	86	0	210	37	24	14	23	1.93
32185430--32185567	40	3.5	40	88	0	195	34	23	15	25	1.95
32192353--32192395	20	2.2	20	83	8	52	55	2	20	20	1.54
32194967--32195012	3	15.3	3	100	0	92	32	0	0	67	0.91
32206958--32207244	61	4.7	61	77	1	200	28	25	12	33	1.92
32207002--32207244	122	2.0	122	81	3	283	27	24	13	34	1.92
32207002--32207248	61	4.0	61	79	2	228	27	23	12	35	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410