genome.fa.s13.2.7.7.80.10.50.1000.302.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  302  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93546129--93546174	12	3.8	12	91	5	74	32	0	0	67	0.91
93546133--93546191	10	5.4	12	75	22	67	33	0	0	66	0.92
93546209--93546244	7	5.0	7	86	6	54	30	2	0	66	1.06
93546137--93546242	29	3.6	28	74	17	90	31	5	0	63	1.18
93546254--93546312	22	2.7	22	75	12	59	50	3	0	45	1.18
93546373--93546427	19	2.9	18	74	10	56	40	3	3	52	1.36
93546592--93546626	18	1.9	18	88	0	52	17	0	8	74	1.06
93546665--93546864	106	1.9	106	82	6	253	32	5	12	50	1.62
93548801--93549010	40	5.2	40	87	2	305	25	24	28	21	1.99
93556256--93556475	123	1.8	121	83	5	291	32	10	23	33	1.89
93556433--93556614	40	4.6	40	81	4	172	28	21	26	23	1.99
93556433--93556658	79	2.9	78	78	6	188	26	22	28	23	1.99
93560955--93561084	40	3.3	39	83	4	163	23	25	28	23	1.99
93580206--93580231	13	2.0	13	100	0	52	15	30	38	15	1.88
93582349--93582757	27	15.2	27	84	0	460	27	21	9	41	1.84
93582351--93582754	81	5.0	80	87	2	524	27	21	9	41	1.84
93582762--93583012	54	4.6	54	86	2	308	36	18	19	25	1.94
93582762--93583011	27	9.3	27	84	1	277	36	18	19	26	1.95
93583210--93583292	27	3.1	26	87	5	112	19	21	21	37	1.94
93583380--93583438	22	2.7	22	81	0	64	20	25	22	32	1.98
93583611--93583676	27	2.5	26	80	7	78	15	22	24	37	1.92
93583819--93583872	6	9.0	6	92	8	92	16	16	16	50	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93583795--93583923	61	2.1	61	86	2	179	17	17	13	50	1.78
93591897--93592050	40	3.9	40	80	0	139	24	29	22	22	1.99
93599540--93599677	39	3.5	39	94	0	240	23	31	20	23	1.98
93602482--93602536	18	2.8	19	84	13	60	38	20	20	21	1.94
93602464--93602742	24	12.1	24	92	6	402	35	24	18	20	1.95
93602516--93602742	94	2.4	96	96	1	431	34	25	18	21	1.96
93606332--93606636	24	13.1	24	90	6	459	35	24	18	20	1.95
93606516--93606547	16	2.0	16	100	0	64	31	18	25	25	1.98
93606444--93606619	88	2.0	88	98	0	343	34	23	19	21	1.96
93606420--93606636	112	1.9	112	97	0	407	34	24	19	21	1.96
93614403--93614668	24	11.1	24	95	0	453	35	25	18	20	1.95
93617797--93617995	39	5.1	39	93	0	326	22	29	25	23	1.99
93622867--93622990	41	3.0	42	84	3	144	33	24	20	21	1.97
93627563--93627714	27	5.7	27	88	0	189	42	20	7	30	1.79
93627557--93627714	54	2.9	54	87	2	212	41	20	7	31	1.80
93627563--93627786	81	2.8	80	77	7	204	40	20	8	30	1.83
93627563--93627786	54	4.2	54	78	4	211	40	20	8	30	1.83
93627698--93627772	27	2.8	27	87	4	107	38	24	10	26	1.88
93627764--93628217	27	16.9	27	86	4	560	27	22	9	40	1.84
93629454--93629501	25	1.9	25	86	0	69	33	25	16	25	1.96
93629544--93629602	20	3.0	20	92	0	100	35	11	20	32	1.89
93629653--93629794	24	6.0	24	90	5	200	28	21	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93629653--93629794	46	3.0	47	88	7	198	28	21	22	26	1.99
93629986--93630049	31	2.1	31	96	0	119	39	15	21	23	1.92
93633684--93633751	15	4.5	15	79	0	73	13	17	11	57	1.65
93633675--93633751	30	2.6	30	77	8	84	12	16	14	55	1.69
93636106--93636334	46	4.8	45	73	16	169	21	20	29	29	1.98
93636161--93636280	53	2.3	53	92	1	197	21	19	30	28	1.97
93639015--93639100	43	2.0	43	84	8	113	25	18	26	29	1.98
93640425--93640472	25	1.9	25	83	8	62	41	2	6	50	1.39
93660118--93660421	24	13.1	24	91	6	450	21	18	24	35	1.95
93660207--93660238	16	2.0	16	100	0	64	25	25	18	31	1.98
93665776--93665935	39	4.1	39	95	0	284	22	24	30	22	1.99
93673666--93673803	32	4.3	32	90	1	215	36	21	7	34	1.81
93673666--93673803	63	2.2	64	96	1	251	36	21	7	34	1.81
93673799--93673906	26	4.2	26	92	0	180	37	24	6	32	1.81
93674794--93674872	28	2.8	28	86	0	104	34	11	25	29	1.91
93680519--93680563	22	2.0	23	83	8	58	42	6	0	51	1.28
93681909--93681938	15	1.9	16	93	6	53	16	3	6	73	1.18
93682903--93682982	40	2.0	40	100	0	160	35	17	25	22	1.95
93683138--93683167	12	2.5	12	94	0	51	6	26	36	30	1.82
93684079--93684195	41	2.9	41	84	0	144	34	14	29	22	1.93
93690718--93690858	43	3.3	43	83	2	185	26	16	25	31	1.96
93690843--93691161	56	5.7	56	85	4	430	27	12	24	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93690837--93691147	166	1.9	167	89	3	484	27	12	24	35	1.92
93695700--93695730	14	2.3	13	94	5	53	87	0	0	12	0.55
93706703--93706798	41	2.3	43	80	7	108	23	27	18	30	1.98
93706745--93706850	43	2.5	43	82	3	133	25	31	18	24	1.98
93709746--93709830	26	3.3	26	90	6	122	30	18	21	29	1.97
93709746--93709843	26	3.9	24	84	9	99	29	20	21	28	1.98
93709746--93709842	50	1.9	52	81	12	121	28	20	21	28	1.98
93710436--93710470	18	1.9	18	88	0	52	34	25	8	31	1.86
93717775--93717896	26	4.8	25	89	6	158	27	19	22	30	1.98
93717775--93717896	51	2.4	48	86	8	154	27	19	22	30	1.98
93718488--93718522	18	1.9	18	88	0	52	37	20	8	34	1.83
93732056--93732248	54	3.6	53	83	4	235	34	17	24	23	1.95
93732056--93732275	54	4.1	54	79	7	232	35	15	26	23	1.94
93736322--93736428	45	2.4	44	78	9	117	43	18	18	18	1.88
93736418--93736618	45	4.5	45	73	7	138	36	16	20	26	1.94
93736577--93736711	46	3.0	44	77	12	130	48	15	17	18	1.82
93741479--93741700	124	1.8	122	83	3	293	31	11	23	32	1.91
93741659--93741809	40	3.8	40	77	11	141	26	24	27	21	2.00
93741696--93741825	40	3.2	40	79	2	154	23	23	28	23	2.00
93741658--93741825	80	2.1	80	82	6	207	26	23	27	22	2.00
93750981--93751044	31	2.1	31	90	0	101	25	23	15	35	1.94
93751236--93751422	23	8.0	24	91	7	305	27	21	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93751479--93751535	9	5.9	9	73	15	51	35	21	8	35	1.84
93751467--93751537	20	3.5	20	94	0	124	32	21	11	35	1.89
93751472--93751526	11	5.4	11	70	16	55	30	20	12	36	1.90
93751574--93751621	25	1.9	25	86	0	69	25	16	25	33	1.96
93759348--93759510	23	7.0	24	90	7	248	28	21	20	30	1.98
93759369--93759509	47	3.1	47	92	6	236	29	20	19	30	1.97
93759567--93759623	9	5.9	9	73	15	51	35	21	8	35	1.84
93759566--93759625	20	3.0	20	95	0	111	33	20	11	35	1.88
93759662--93759709	25	1.9	25	86	0	69	25	16	25	33	1.96
93761507--93761546	17	2.4	17	87	8	55	12	22	40	25	1.89
93762937--93763124	49	3.8	48	81	6	223	28	26	18	26	1.98
93762944--93763129	100	1.9	100	93	0	318	29	26	18	25	1.98
93766262--93766353	47	2.0	47	91	0	148	44	14	11	29	1.80
93771998--93772167	93	1.8	92	96	1	313	28	28	21	21	1.99
93771992--93772176	45	4.0	46	74	17	159	28	29	20	22	1.98
93772576--93772635	30	2.0	30	90	0	93	30	25	8	36	1.85
93779538--93779707	46	3.8	44	79	11	200	28	27	21	21	1.99
93779543--93779711	91	1.8	92	94	1	304	28	28	21	21	1.99
93780124--93780183	30	2.0	30	90	0	93	30	25	8	36	1.85
93789465--93789689	40	5.5	40	90	2	317	25	28	22	24	2.00
93789486--93789696	43	5.0	43	92	1	326	26	27	20	25	1.99
93797398--93797575	40	4.5	40	97	0	331	26	26	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93802621--93802811	40	4.8	39	78	7	172	23	28	24	24	1.99
93802661--93802811	78	1.9	80	85	5	209	23	28	23	25	1.99
93810661--93810851	40	4.8	39	78	7	172	23	28	24	24	1.99
93810701--93810851	78	1.9	80	85	5	209	23	28	23	25	1.99
93818234--93818415	40	4.6	40	90	2	287	27	25	23	23	2.00
93841162--93841240	31	2.5	31	93	0	131	26	25	18	29	1.98
93841458--93841582	26	4.8	26	88	0	187	27	21	22	28	1.99
93841452--93841582	52	2.5	52	95	1	228	27	20	21	30	1.98
93842386--93842472	27	3.2	27	90	3	122	19	26	19	34	1.96
93842503--93842846	27	12.8	27	77	5	257	30	9	19	40	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410