Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  349  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107670276--107670408
26
5.2
26
85
10
195
35
23
6
35
1.79
107670276--107670408
51
2.6
51
94
3
225
35
23
6
35
1.79
107676047--107676237
26
7.2
26
78
14
201
35
22
5
36
1.78
107676047--107676239
109
1.8
104
85
7
257
35
22
5
36
1.78
107689461--107689496
13
2.8
13
82
0
54
5
11
0
83
0.80
107696064--107696116
18
2.8
19
86
10
74
69
1
1
26
1.09
107696073--107696118
20
2.3
20
85
7
58
71
2
2
23
1.08
107696851--107696907
24
2.4
24
85
5
71
33
31
3
31
1.75
107698348--107698377
15
2.0
15
93
0
51
66
3
0
30
1.07
107701507--107701557
20
2.5
20
96
0
93
33
15
0
50
1.44
107703811--107703978
51
3.3
51
95
0
300
33
17
23
25
1.96
107703906--107703930
7
3.6
7
100
0
50
40
12
32
16
1.84
107706229--107706404
46
3.8
46
79
12
216
20
21
29
28
1.98
107706226--107706397
93
1.8
93
96
0
317
20
21
29
27
1.98
107713812--107713987
46
3.8
46
79
12
216
20
21
29
28
1.98
107713809--107713980
93
1.8
93
96
0
317
20
21
29
27
1.98
107731264--107731311
20
2.4
20
85
0
69
27
22
20
29
1.99
107733103--107733398
95
3.1
95
76
2
299
35
21
17
25
1.95
107735417--107735529
36
3.0
36
75
9
109
32
22
21
23
1.98
107735360--107735578
71
3.0
70
72
12
174
33
20
21
24
1.97
107741262--107741295
2
17.0
2
100
0
68
50
0
0
50
1.00
107745889--107745952
21
3.0
22
77
11
71
40
25
20
14
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107754591--107754629
21
1.9
20
84
5
51
7
10
17
64
1.48
107754656--107754701
24
2.0
24
86
4
67
4
4
17
73
1.15
107755528--107755577
13
3.6
13
76
12
55
38
0
0
62
0.96
107756627--107756653
13
2.1
13
100
0
54
40
7
7
44
1.60
107757533--107757571
19
2.1
19
90
9
62
46
25
10
17
1.80
107762410--107762439
14
2.1
14
100
0
60
40
0
0
60
0.97
107762615--107762671
27
2.1
27
96
0
105
35
8
26
29
1.87
107772372--107772423
15
3.2
15
73
19
50
44
0
1
53
1.11
107772495--107772537
16
2.6
16
92
3
68
48
0
2
48
1.14
107779265--107779297
11
3.0
11
95
0
57
45
3
18
33
1.65
107782350--107782392
22
2.0
22
100
0
86
46
9
4
39
1.57
107783231--107783352
43
2.8
43
79
9
124
26
16
26
31
1.96
107793111--107793143
13
2.5
13
90
9
50
15
18
0
66
1.25
107793115--107793231
57
2.1
56
83
4
146
27
17
5
48
1.70
107793115--107793245
57
2.3
57
81
6
140
26
16
5
51
1.66
107794754--107794809
28
2.0
28
86
6
78
7
21
0
71
1.09
107794777--107794809
12
2.8
12
90
9
50
3
21
0
75
0.93
107799972--107800063
43
2.2
42
86
2
121
30
18
17
33
1.94
107806835--107807122
43
6.9
43
82
6
254
23
29
19
26
1.98
107806916--107807122
84
2.4
84
88
4
290
23
30
20
25
1.98
107806916--107807163
127
1.9
126
85
5
338
23
30
20
25
1.99
107808667--107808693
12
2.2
12
100
0
54
25
7
7
59
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107821103--107821259
43
3.7
41
78
7
118
24
16
26
31
1.96
107824763--107824827
34
1.9
34
84
9
89
27
29
21
21
1.99
107826080--107826134
27
2.0
27
100
0
110
52
18
10
18
1.73
107836140--107836180
21
2.0
21
81
18
50
39
17
14
29
1.89
107838393--107838442
22
2.3
22
80
16
59
18
6
2
74
1.12
107845769--107845793
10
2.5
10
100
0
50
48
8
12
32
1.69
107845789--107845843
26
2.2
25
96
3
101
30
7
25
36
1.83
107851906--107852012
26
4.2
26
96
1
198
30
5
27
36
1.80
107856210--107856380
93
1.8
93
94
0
306
28
29
21
21
1.98
107856205--107856377
46
3.7
46
78
13
210
29
28
20
21
1.98
107860550--107860659
55
2.0
55
100
0
220
32
20
9
38
1.84
107866162--107866193
7
4.6
7
96
0
55
18
31
9
40
1.83
107866162--107866198
14
2.6
14
86
0
56
24
29
8
37
1.84
107866117--107866244
58
2.2
58
95
0
229
28
24
13
33
1.93
107866169--107866288
51
2.4
51
90
2
179
29
25
14
31
1.94
107873592--107873634
22
2.0
22
90
0
68
32
30
11
25
1.91
107886974--107887003
12
2.5
12
94
0
51
43
0
0
56
0.99
107892229--107892408
25
7.2
25
78
6
98
36
16
23
24
1.94
107892320--107892415
49
1.9
50
89
2
149
40
16
21
20
1.91
107892320--107892415
25
3.9
25
88
1
140
40
16
21
20
1.91
107897847--107897884
20
2.0
20
89
5
60
60
5
0
34
1.19
107897877--107897933
30
1.9
30
85
7
80
63
1
3
31
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107907764--107907812
6
7.8
6
84
8
53
22
2
0
75
0.90
107914678--107914783
52
2.0
52
96
0
194
35
17
8
37
1.81
107920576--107920638
26
2.3
26
83
5
72
7
19
47
25
1.76
107920597--107920646
26
1.9
26
95
0
91
8
22
46
24
1.78
107923571--107923685
42
2.7
42
84
6
144
26
25
15
32
1.96
107923656--107923779
47
2.7
46
84
2
158
29
26
16
28
1.97
107923804--107923952
31
4.8
31
90
3
228
24
27
20
27
1.99
107925423--107925562
11
12.9
10
72
15
100
57
28
9
4
1.49
107925423--107925562
33
4.3
33
79
8
128
57
28
9
4
1.49
107925420--107925557
55
2.5
54
86
5
188
58
27
8
5
1.49
107925545--107925649
56
1.9
55
86
2
147
59
26
8
5
1.50
107936189--107936303
44
2.6
44
84
2
140
36
13
21
27
1.92
107936189--107936322
46
3.0
45
80
4
135
36
14
22
26
1.92
107942563--107942625
30
2.1
30
90
0
99
26
3
12
57
1.51
107944284--107944312
15
2.0
15
93
6
51
68
0
0
31
0.89
107945361--107945443
40
2.0
41
81
4
96
21
16
31
30
1.96
107948008--107948055
2
24.0
2
100
0
96
50
0
0
50
1.00
107951307--107951363
30
2.0
28
90
10
89
14
22
14
49
1.79
107952910--107952950
12
3.8
11
84
15
50
51
12
26
9
1.70
107960345--107960623
90
3.1
90
85
2
373
46
14
8
31
1.74
107961752--107961782
6
5.0
6
92
7
53
16
0
3
80
0.83
107962342--107962560
109
2.0
109
100
0
438
33
14
19
32
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107964520--107964683
87
1.9
86
84
3
222
25
15
22
35
1.94
107966551--107966609
27
2.2
27
87
0
82
16
16
20
45
1.85
107967918--107967955
18
2.1
18
85
9
51
36
5
0
57
1.21
107974541--107974648
56
1.9
55
94
1
189
37
8
12
41
1.72
107990703--107990728
2
13.0
2
100
0
52
50
0
0
50
1.00
107992275--107992310
18
2.0
18
100
0
72
38
16
5
38
1.72
107997620--107997662
10
4.5
10
82
5
54
32
0
0
67
0.91
107997625--107997665
20
2.1
19
90
4
64
39
0
0
60
0.96
108000769--108000950
46
4.0
46
93
1
294
39
15
23
21
1.92
108003592--108003646
28
2.0
28
92
3
94
40
18
0
41
1.50
108004923--108004959
2
18.5
2
100
0
74
48
0
0
51
1.00
108006056--108006181
54
2.3
54
97
2
236
25
21
35
17
1.95
108010675--108010721
17
2.9
16
79
17
60
63
0
0
36
0.94
108010688--108010714
11
2.5
11
100
0
54
62
0
0
37
0.95
108010664--108010731
33
2.0
34
85
2
93
60
1
0
38
1.06
108025014--108025047
17
2.0
17
88
0
50
61
5
5
26
1.42
108028995--108029053
30
2.0
30
93
0
100
28
18
27
25
1.98
108029494--108029654
44
3.5
45
76
10
155
29
19
29
21
1.98
108030272--108030303
12
2.7
12
100
0
64
43
9
31
15
1.78
108037819--108038046
39
5.7
40
85
6
259
24
21
28
25
1.99
108037823--108038065
81
3.1
78
77
13
255
24
21
29
25
1.99
108043713--108043754
22
1.9
22
85
9
59
30
7
7
54
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108043899--108043942
15
2.8
16
82
10
63
31
0
11
56
1.35
108044030--108044084
23
2.5
22
78
3
56
38
7
1
52
1.40
108044067--108044119
27
1.9
28
84
3
72
33
9
1
54
1.43
108045185--108045241
28
2.0
28
100
0
114
43
24
21
10
1.83
108047281--108047347
34
1.9
35
87
3
100
25
23
23
26
2.00
108048245--108048286
21
2.0
21
85
0
57
38
0
23
38
1.55
108049286--108049413
40
3.2
40
87
6
177
33
20
20
25
1.97
108049286--108049417
42
3.2
42
86
8
189
34
19
19
26
1.96
108056871--108057022
40
3.7
39
89
6
198
30
23
22
23
1.99
108056895--108057026
42
3.2
42
93
4
232
31
22
20
25
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410