genome.fa.s13.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  136  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41146033--41146102	27	2.6	27	93	2	113	30	28	14	27	1.95
41153084--41153249	42	3.9	42	76	6	147	30	25	15	29	1.95
41160544--41160655	43	2.6	42	85	2	161	28	16	25	29	1.96
41162639--41162806	43	3.9	43	80	7	189	31	26	16	25	1.96
41164141--41164185	22	2.0	22	95	0	81	44	0	20	35	1.51
41174232--41174301	27	2.5	28	95	2	124	28	14	27	30	1.95
41174232--41174313	27	3.0	27	85	8	78	29	15	24	30	1.96
41179646--41179715	27	2.6	27	93	2	113	30	28	14	27	1.95
41187584--41187653	27	2.6	27	93	2	113	30	28	14	27	1.95
41194400--41194582	79	2.3	79	82	9	214	24	27	24	24	2.00
41194393--41194582	40	4.8	40	78	8	185	23	27	23	24	2.00
41202324--41202508	79	2.3	82	83	7	229	23	27	24	24	2.00
41202317--41202508	40	4.8	39	76	8	163	23	28	23	24	2.00
41204744--41204861	29	4.1	29	85	4	143	28	13	30	27	1.94
41209477--41209597	43	2.9	42	78	2	143	28	16	25	29	1.97
41220869--41220977	37	2.9	37	97	0	200	27	31	19	22	1.97
41221124--41221258	48	2.8	48	90	0	216	30	28	7	34	1.84
41221228--41221421	47	4.1	47	93	0	316	26	28	11	33	1.92
41221296--41221373	23	3.2	25	64	29	69	29	32	10	28	1.90
41221321--41221396	22	3.3	22	65	28	59	25	31	13	30	1.93
41226699--41226821	51	2.4	50	82	5	149	23	13	22	39	1.90
41226679--41226838	25	6.4	23	71	13	97	24	12	24	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41230249--41230360	47	2.4	48	85	7	156	36	19	15	28	1.92
41235895--41235922	14	2.0	14	100	0	56	21	7	35	35	1.81
41238493--41238927	153	2.8	153	79	5	430	29	19	19	31	1.97
41238875--41238968	40	2.3	38	84	8	116	25	21	18	35	1.95
41239268--41239302	15	2.4	14	90	4	52	20	0	34	45	1.51
41239217--41239298	22	3.8	22	70	19	55	24	2	30	42	1.67
41239367--41239424	15	4.1	14	77	12	57	24	0	25	50	1.50
41239323--41239421	21	4.6	22	70	12	73	22	1	31	45	1.59
41239515--41239559	14	3.2	14	83	0	63	17	0	31	51	1.46
41239626--41239669	7	6.3	7	81	0	52	18	0	27	54	1.44
41239657--41239710	21	2.5	23	79	14	69	22	0	38	38	1.54
41240495--41240600	41	2.6	40	85	7	142	33	10	24	31	1.89
41240524--41240610	41	2.1	41	84	0	111	39	12	20	27	1.89
41247271--41247306	7	5.0	7	86	6	54	66	0	2	30	1.06
41247265--41247472	15	13.5	15	69	17	108	60	1	4	33	1.26
41247324--41247412	10	8.9	10	72	17	60	62	1	3	32	1.19
41247328--41247396	17	4.2	16	78	9	68	62	0	4	33	1.15
41247324--41247421	40	2.3	42	81	10	112	64	1	3	31	1.16
41247324--41247412	19	4.4	20	72	19	69	62	1	3	32	1.19
41248935--41249518	44	13.3	44	82	1	681	28	27	15	28	1.96
41250387--41250420	15	2.4	14	90	5	50	2	5	0	91	0.51
41261519--41261554	7	5.0	7	86	6	54	66	0	2	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41261519--41261554	15	2.5	14	86	8	54	66	0	2	30	1.06
41261572--41261671	5	20.2	5	70	17	57	65	1	3	31	1.15
41261572--41261660	10	8.9	10	73	17	69	64	1	3	31	1.17
41261578--41261644	17	4.1	16	77	9	64	62	0	4	32	1.15
41261572--41261669	40	2.3	45	83	10	127	65	1	3	30	1.15
41261577--41261671	30	3.2	29	77	16	106	64	1	3	31	1.16
41261578--41261673	15	6.3	15	73	24	78	63	1	3	32	1.17
41264110--41264280	93	1.8	93	94	0	306	27	29	21	21	1.98
41264102--41264277	46	3.8	46	81	10	214	28	29	21	21	1.98
41266654--41266703	15	3.4	15	86	2	66	62	12	18	8	1.53
41269596--41269767	93	1.8	93	94	0	308	27	30	21	20	1.98
41269588--41269763	46	3.8	46	81	10	214	28	29	21	21	1.98
41273862--41273993	29	4.6	29	84	1	149	25	16	32	25	1.96
41281207--41281338	29	4.6	29	84	1	149	25	16	32	25	1.96
41292586--41292712	43	3.0	44	75	13	131	37	23	14	25	1.92
41303511--41303708	40	4.9	40	91	4	287	28	21	25	24	1.99
41303511--41303736	40	5.7	40	89	4	273	27	21	26	24	1.99
41305780--41305832	25	2.1	25	100	0	106	41	24	3	30	1.72
41306354--41306380	14	1.9	14	100	0	54	88	0	3	7	0.61
41315987--41316011	12	2.1	12	100	0	50	24	16	16	44	1.86
41319415--41319571	85	1.8	85	83	2	208	25	26	21	26	2.00
41320144--41320168	11	2.3	11	100	0	50	28	0	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41322221--41322245	11	2.3	11	100	0	50	72	0	0	28	0.86
41322274--41322321	4	12.5	4	91	8	73	52	2	0	45	1.12
41329847--41329948	42	2.4	43	78	6	109	27	23	19	29	1.98
41331834--41331862	12	2.4	12	100	0	58	37	10	6	44	1.65
41337023--41337061	18	2.2	18	95	0	69	23	25	10	41	1.86
41340969--41341017	14	3.6	13	89	8	71	42	0	14	42	1.45
41340967--41341035	27	2.6	26	77	11	77	39	0	14	46	1.45
41341041--41341083	10	4.3	10	82	11	61	20	6	2	69	1.23
41341126--41341221	48	2.0	48	100	0	192	29	14	22	33	1.94
41341855--41341888	18	1.9	18	94	5	61	26	5	2	64	1.30
41345405--41345521	34	3.7	33	83	7	136	41	16	0	42	1.48
41345563--41345641	34	2.3	35	84	6	99	49	22	2	25	1.62
41348319--41348503	40	4.7	40	81	6	207	28	25	21	24	1.99
41348347--41348449	39	2.6	40	92	1	163	28	27	19	25	1.99
41348319--41348503	79	2.3	80	80	7	198	28	25	21	24	1.99
41353460--41353513	27	2.0	27	85	0	72	38	7	14	38	1.75
41356190--41356243	27	2.0	27	85	0	72	38	7	14	38	1.75
41356490--41356584	49	1.9	49	86	0	136	28	18	25	27	1.98
41359954--41360015	30	2.1	30	100	0	124	40	16	9	33	1.81
41362321--41362380	25	2.4	23	81	10	57	51	10	1	36	1.45
41362742--41362766	4	6.2	4	100	0	50	0	24	0	76	0.80
41365074--41365116	18	2.2	18	88	12	59	69	0	2	27	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41366451--41366515	28	2.3	28	94	0	112	18	44	21	15	1.86
41367488--41367668	96	1.9	96	88	8	276	25	31	18	24	1.97
41381953--41382177	124	1.8	124	85	1	317	30	11	23	35	1.89
41382172--41382299	40	3.2	40	82	4	161	23	25	27	24	2.00
41393287--41393313	13	2.1	13	100	0	54	14	33	37	14	1.88
41394773--41394801	2	14.5	2	100	0	58	51	0	0	48	1.00
41398482--41398666	79	2.3	80	92	0	300	25	28	23	22	1.99
41398482--41398666	40	4.7	40	94	1	300	25	28	23	22	1.99
41398482--41398704	40	5.6	39	86	8	244	25	28	23	22	1.99
41398482--41398704	119	1.9	119	84	3	306	25	28	23	22	1.99
41406580--41406804	40	5.7	39	88	3	290	24	28	23	23	2.00
41410947--41410983	17	2.2	17	86	13	51	32	2	18	45	1.64
41428987--41429065	29	2.7	29	86	5	106	27	32	15	24	1.95
41438821--41438879	23	2.5	23	86	2	82	40	27	18	13	1.88
41440949--41440989	22	1.9	22	95	5	75	17	29	43	9	1.80
41449124--41449197	26	2.9	25	84	6	103	41	6	16	35	1.74
41450903--41450932	2	15.0	2	100	0	60	50	0	0	50	1.00
41451644--41451823	39	4.6	38	81	8	184	25	21	26	27	1.99
41451642--41451842	40	5.1	40	81	9	225	25	21	26	26	2.00
41451642--41451855	79	2.7	78	81	9	213	26	21	26	26	1.99
41456738--41458346	802	2.0	802	98	0	3112	28	16	25	29	1.97
41460641--41460825	79	2.3	81	84	7	236	24	22	26	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41460642--41460825	40	4.6	39	82	9	212	24	22	26	26	2.00
41460642--41460857	79	2.7	79	78	13	230	25	21	26	26	1.99
41465302--41465490	75	2.5	73	79	12	190	42	7	11	38	1.68
41473124--41473171	21	2.3	20	79	13	53	37	2	8	52	1.44
41479221--41479260	21	1.9	21	94	0	71	12	30	20	37	1.89
41479622--41479650	13	2.1	14	93	6	51	55	10	0	34	1.34
41484794--41484968	36	4.9	36	92	2	298	36	2	18	42	1.63
41484924--41485032	43	2.5	43	86	1	146	35	0	15	48	1.45
41485852--41485898	24	2.0	24	86	0	67	44	6	19	29	1.75
41487753--41487963	115	1.8	114	82	7	266	35	22	14	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410