genome.fa.s13.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  121  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36442138--36442289	68	2.3	67	80	10	163	25	30	15	29	1.95
36446445--36446682	27	8.8	26	87	2	278	31	23	6	38	1.81
36446293--36446719	27	15.9	27	79	4	164	35	21	7	35	1.83
36446445--36446684	54	4.4	54	87	0	336	32	22	6	38	1.80
36446432--36446692	81	3.2	81	83	1	326	34	22	6	36	1.80
36446704--36446933	27	8.5	26	88	3	307	33	22	20	23	1.97
36446704--36446933	54	4.3	54	88	2	338	33	22	20	23	1.97
36446700--36446951	81	3.1	80	86	5	348	34	21	20	24	1.97
36447196--36447247	27	2.0	26	84	3	68	17	23	21	38	1.93
36447366--36447509	6	22.8	6	73	17	105	17	18	14	49	1.80
36447369--36447411	22	2.0	22	95	0	77	16	23	13	46	1.83
36447394--36447460	19	3.6	19	80	11	93	20	19	10	49	1.77
36447391--36447509	37	3.2	37	91	0	184	17	18	14	49	1.79
36448071--36448257	93	2.0	93	88	4	279	28	17	24	28	1.97
36449252--36449346	47	2.0	47	91	2	156	29	13	13	43	1.83
36450129--36450300	45	3.9	45	84	6	210	23	18	30	27	1.98
36454857--36454971	29	4.0	29	82	6	128	29	28	14	26	1.95
36454848--36454958	58	1.9	57	83	1	141	29	28	14	27	1.95
36455164--36455198	16	2.2	16	100	0	70	11	17	17	54	1.71
36463301--36463370	27	2.5	28	88	2	106	31	25	14	28	1.95
36470133--36470250	40	2.9	39	90	5	182	27	27	20	24	1.99
36470796--36470885	38	2.4	38	96	0	162	32	30	13	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36478151--36478336	40	4.7	40	89	5	261	26	27	21	24	1.99
36485314--36485362	6	7.8	6	82	8	62	0	18	2	79	0.83
36485309--36485362	16	3.4	16	78	17	67	0	18	1	79	0.82
36487427--36487463	11	3.6	11	82	17	53	10	5	5	78	1.08
36492639--36492797	39	4.1	39	86	3	212	28	18	22	30	1.98
36493168--36493205	2	19.0	2	100	0	76	50	0	0	50	1.00
36501751--36501994	121	2.0	121	93	1	418	31	16	12	38	1.87
36514934--36514991	26	2.2	26	90	0	89	31	18	24	25	1.98
36517960--36518039	38	2.1	38	83	0	97	16	20	26	37	1.93
36520549--36520630	27	3.1	27	89	3	130	24	20	18	36	1.95
36522035--36522082	24	2.0	24	100	0	96	37	4	8	50	1.52
36524449--36524486	20	1.9	20	88	0	58	34	2	10	52	1.50
36526105--36526173	28	2.5	28	95	2	122	43	27	10	18	1.82
36529852--36529913	15	4.2	15	80	10	65	11	19	12	56	1.66
36535354--36535415	15	4.2	15	80	10	65	11	19	12	56	1.66
36540230--36540259	15	1.9	16	93	6	53	33	16	3	46	1.64
36540326--36540518	42	4.5	43	78	6	160	27	25	19	26	1.99
36547562--36547591	15	1.9	16	93	6	53	36	16	0	46	1.47
36547657--36547850	42	4.5	42	79	7	178	28	26	20	24	1.99
36549459--36549559	36	2.8	36	84	0	139	44	15	13	25	1.84
36552997--36553102	55	1.9	54	83	5	133	37	19	23	18	1.94
36552997--36553105	27	4.0	27	81	7	105	37	20	23	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36560263--36560296	2	17.0	2	100	0	68	50	0	0	50	1.00
36561010--36561267	40	6.5	40	87	4	335	23	22	27	25	2.00
36564745--36564934	29	6.6	29	82	2	168	26	15	32	24	1.96
36572488--36572677	29	6.6	29	81	2	159	26	15	32	25	1.95
36579268--36579301	2	17.0	2	100	0	68	50	0	0	50	1.00
36580016--36580195	40	4.5	40	95	2	317	21	23	28	26	1.99
36583306--36583439	28	4.9	27	85	8	155	38	23	21	16	1.92
36583320--36583439	28	4.3	28	87	8	165	36	25	22	15	1.94
36583320--36583439	55	2.2	56	86	7	165	36	25	22	15	1.94
36596833--36597014	40	4.6	40	79	8	176	24	24	28	23	2.00
36596833--36597014	78	2.3	80	82	6	210	24	24	28	23	2.00
36601270--36601330	29	2.1	29	90	3	97	29	14	27	27	1.95
36601282--36601416	28	4.7	29	80	7	125	27	14	32	25	1.94
36601294--36601421	57	2.2	57	83	5	152	27	13	32	26	1.93
36603319--36603409	42	2.2	42	94	2	157	15	20	23	40	1.90
36613776--36613878	29	3.6	29	81	2	118	21	16	33	29	1.95
36621787--36621889	29	3.6	29	81	2	118	21	16	33	29	1.95
36626364--36626403	18	2.2	18	86	0	53	45	25	22	7	1.78
36627875--36627950	21	3.4	21	71	10	53	71	0	19	9	1.13
36627927--36627968	13	3.0	14	86	10	59	71	0	21	7	1.09
36627929--36627968	15	2.8	15	88	7	57	75	0	20	5	0.99
36630241--36630318	38	2.1	38	95	0	138	28	20	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36634013--36634044	14	2.4	14	90	10	50	21	6	28	43	1.77
36634000--36634311	50	6.2	50	75	4	230	26	15	25	32	1.96
36634061--36634293	50	4.6	51	77	1	236	25	18	25	30	1.98
36634061--36634313	101	2.5	101	89	2	384	25	17	25	30	1.97
36641521--36641551	9	3.4	9	100	0	62	38	0	25	35	1.56
36642380--36642464	15	5.9	14	76	14	57	22	1	35	41	1.62
36642411--36642461	21	2.4	21	84	12	61	23	1	37	37	1.66
36642522--36642557	4	9.0	4	100	0	72	50	0	0	50	1.00
36642678--36642732	22	2.5	23	82	8	62	16	0	30	52	1.44
36643177--36643244	7	9.3	7	79	6	64	58	0	0	41	0.98
36643176--36643244	22	3.1	22	74	2	75	59	0	0	40	0.97
36643174--36643233	30	2.0	30	87	6	86	63	0	0	36	0.95
36643177--36643235	8	7.9	8	83	7	54	59	0	0	40	0.97
36646884--36647262	23	16.5	22	76	9	280	32	6	23	36	1.80
36646917--36647265	69	5.1	68	77	7	321	33	6	23	36	1.81
36648094--36648199	42	2.5	43	84	6	144	22	29	20	27	1.99
36650800--36651024	40	5.6	40	85	4	274	24	28	23	24	2.00
36650768--36651024	80	3.2	80	83	3	304	24	26	23	24	2.00
36652832--36652862	9	3.4	9	100	0	62	38	0	25	35	1.56
36653716--36653765	20	2.5	20	87	9	66	24	2	36	38	1.67
36653825--36653860	4	9.0	4	100	0	72	50	0	0	50	1.00
36653981--36654034	22	2.5	22	82	11	60	16	0	31	51	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36654477--36654544	7	9.3	7	79	6	64	58	0	0	41	0.98
36654476--36654544	22	3.1	22	74	2	75	59	0	0	40	0.97
36654474--36654533	30	2.0	30	87	6	86	63	0	0	36	0.95
36654477--36654535	8	7.9	8	83	7	54	59	0	0	40	0.97
36656656--36656879	40	5.6	40	86	3	308	23	28	24	24	2.00
36656620--36656879	80	3.3	80	85	4	330	23	27	23	25	2.00
36669877--36670100	40	5.6	40	86	3	308	23	28	24	24	2.00
36669842--36670100	80	3.3	80	84	4	321	23	27	23	25	2.00
36677973--36678233	40	6.6	40	83	5	289	24	27	23	24	2.00
36677973--36678233	80	3.3	80	84	3	321	24	27	23	24	2.00
36680177--36680396	40	5.5	40	88	1	309	26	25	23	24	2.00
36686799--36686970	46	3.7	46	74	13	163	22	19	27	30	1.98
36690935--36690997	30	2.1	30	85	5	83	28	1	11	58	1.41
36694953--36694998	21	2.0	21	84	12	56	50	6	6	36	1.54
36698731--36698836	37	2.9	37	94	0	176	26	33	17	22	1.96
36698884--36699412	48	11.0	48	90	1	783	31	26	6	35	1.82
36707813--36708035	47	4.7	47	87	3	293	27	30	8	33	1.87
36712269--36712348	27	2.9	27	85	5	99	40	16	10	33	1.82
36712278--36712367	27	3.3	27	84	3	110	40	16	10	33	1.82
36712373--36712583	27	7.8	27	88	2	262	28	24	8	39	1.83
36712380--36712583	54	3.8	54	88	0	291	28	22	8	40	1.83
36712454--36712786	27	12.3	27	81	5	154	36	20	8	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36712576--36712814	54	4.4	53	76	9	205	39	19	9	31	1.83
36712577--36712731	81	1.9	81	85	7	217	40	20	9	30	1.83
36712832--36712909	27	2.9	27	77	11	88	35	21	20	21	1.96
36714061--36714108	25	2.0	24	83	4	60	31	25	18	25	1.98
36714145--36714207	20	3.2	20	93	0	108	38	12	17	31	1.87
36714262--36714428	24	7.0	23	87	6	228	29	22	21	26	1.99
36714262--36714428	47	3.5	47	88	4	230	29	22	21	26	1.99
36714262--36714427	71	2.3	71	91	3	262	28	22	21	26	1.99
36714621--36714684	31	2.1	31	90	0	101	35	15	23	25	1.94
36716054--36716102	17	2.8	18	74	22	50	24	18	22	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410