Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  16  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4083991--4084083
29
3.3
27
76
18
59
60
1
9
29
1.36
4083965--4084021
21
2.7
22
73
13
57
64
0
7
28
1.19
4083974--4084043
35
2.1
33
83
5
86
64
0
7
28
1.20
4083964--4084067
27
3.8
27
78
18
94
61
0
7
30
1.24
4086784--4086852
30
2.3
28
81
13
84
27
10
2
59
1.44
4087093--4087152
24
2.7
22
80
10
59
35
5
8
51
1.54
4087363--4087418
18
3.1
18
87
10
71
39
3
0
57
1.16
4100039--4100077
17
2.3
17
86
0
51
58
0
20
20
1.39
4100635--4100666
16
1.9
17
93
6
57
50
0
3
46
1.17
4109461--4109545
43
2.0
43
97
0
161
42
7
11
38
1.69
4114342--4114375
15
2.3
15
90
10
52
2
23
0
73
0.97
4124290--4124344
24
2.2
24
84
9
67
41
16
16
25
1.88
4128584--4128611
13
2.2
13
100
0
56
10
7
17
64
1.47
4130997--4131065
27
2.5
27
79
11
70
24
7
7
60
1.48
4140699--4140739
18
2.2
19
87
12
59
24
14
21
39
1.91
4142023--4142061
19
2.1
19
85
4
53
69
5
2
23
1.21
4142655--4142686
6
5.3
6
96
0
55
0
3
68
28
1.04
4143653--4143677
2
12.5
2
100
0
50
52
0
0
48
1.00
4144132--4144193
18
3.4
17
71
20
54
64
3
1
30
1.19
4144413--4144475
30
2.1
31
87
3
92
47
11
1
39
1.49
4147381--4147441
29
2.1
29
84
9
79
45
0
1
52
1.10
4153862--4153902
20
2.1
19
86
4
55
34
4
9
51
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4154422--4154452
13
2.5
13
94
5
55
67
3
6
22
1.28
4154451--4154510
3
19.7
3
82
3
66
60
1
8
30
1.36
4154699--4154822
61
2.0
60
86
6
169
49
9
15
25
1.75
4157933--4158075
72
2.0
72
94
0
250
39
22
9
29
1.85
4158436--4158484
25
2.0
25
84
4
64
63
8
0
28
1.23
4158448--4158512
25
2.9
23
82
15
75
66
9
0
24
1.21
4158474--4158512
19
2.0
20
95
5
71
71
10
0
17
1.12
4160359--4160401
16
2.6
16
85
7
50
55
18
0
25
1.42
4161375--4161400
13
2.0
13
100
0
52
23
23
7
46
1.78
4161707--4161736
14
2.1
15
93
6
53
56
0
0
43
0.99
4164674--4164729
21
2.6
21
83
11
60
50
0
1
48
1.11
4166547--4166607
30
2.0
30
100
0
122
16
16
19
47
1.83
4170453--4170495
2
21.5
2
95
0
77
46
0
0
53
1.00
4170847--4170894
19
2.6
19
80
9
55
35
2
14
47
1.56
4170908--4171000
43
2.2
43
90
3
143
29
6
12
51
1.65
4172904--4172951
16
3.1
15
90
6
69
64
2
2
31
1.16
4172900--4172955
24
2.3
24
81
6
69
66
1
1
30
1.12
4172900--4172951
8
6.5
8
82
8
61
65
1
1
30
1.14
4173069--4173128
23
2.9
20
70
15
59
56
5
6
31
1.47
4173107--4173171
25
2.8
24
83
6
80
52
6
7
33
1.55
4173191--4173319
23
5.6
23
72
14
88
57
3
4
34
1.35
4173812--4173946
30
4.5
30
84
1
148
23
2
46
26
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4175536--4175566
13
2.3
14
94
5
55
51
9
0
38
1.35
4175599--4175648
17
2.9
17
77
19
59
62
2
0
36
1.07
4177324--4177434
54
2.0
54
83
8
136
38
17
16
27
1.91
4177523--4178152
145
4.2
145
89
5
838
32
22
16
28
1.96
4190751--4190781
13
2.3
14
94
5
55
51
9
0
38
1.35
4190814--4190863
17
2.9
17
77
19
59
62
2
0
36
1.07
4191341--4191374
14
2.2
16
85
15
54
47
0
52
0
1.00
4191335--4191387
22
2.4
22
78
12
63
45
0
54
0
0.99
4192182--4192274
43
2.2
43
90
3
143
29
6
12
51
1.65
4192878--4192905
13
2.2
13
100
0
56
42
21
7
28
1.79
4193257--4193307
26
1.9
26
84
11
68
41
5
3
49
1.45
4193289--4193315
2
13.5
2
100
0
54
48
0
0
51
1.00
4193270--4193338
34
2.1
33
83
2
84
42
4
0
53
1.20
4193324--4193362
17
2.2
18
86
4
53
58
2
2
35
1.25
4194237--4194262
6
4.3
6
100
0
52
84
0
0
15
0.62
4194511--4194558
19
2.7
17
81
15
53
37
12
0
50
1.41
4194551--4194617
35
1.9
35
84
0
89
25
17
7
49
1.73
4195855--4195891
2
18.5
2
100
0
74
0
51
0
48
1.00
4196910--4196969
31
1.9
31
82
0
75
51
18
5
25
1.66
4197938--4197990
26
1.9
26
85
11
70
39
0
0
60
0.97
4197946--4197991
14
3.4
14
76
11
51
34
0
0
65
0.93
4197945--4198005
26
2.4
27
81
13
76
34
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4200835--4200926
46
2.0
45
95
2
166
19
27
3
50
1.63
4202316--4202680
179
2.0
180
96
0
669
43
7
7
41
1.62
4202659--4202717
29
2.0
30
83
3
75
50
11
3
33
1.56
4207371--4207424
28
1.9
28
88
0
81
48
7
5
38
1.55
4218088--4218112
6
4.2
6
100
0
50
64
0
36
0
0.94
4221134--4221189
28
2.0
28
100
0
112
35
0
7
57
1.26
4221656--4221686
2
15.5
2
100
0
62
48
0
0
51
1.00
4225537--4225694
83
1.9
82
80
11
180
43
5
5
46
1.47
4225958--4225989
2
16.0
2
100
0
64
50
0
0
50
1.00
4230808--4230859
15
3.6
14
71
7
50
32
1
5
59
1.32
4231060--4231102
18
2.4
18
88
7
61
46
0
0
53
1.00
4231907--4231960
24
2.2
25
90
3
83
40
0
1
57
1.09
4234468--4234514
17
2.8
17
80
0
58
38
4
6
51
1.47
4238949--4239019
3
24.0
3
83
8
83
33
2
2
60
1.26
4240398--4240462
23
2.8
23
95
2
112
9
7
40
43
1.65
4245402--4245453
19
2.7
19
90
0
77
15
36
26
21
1.93
4247730--4247902
46
3.7
46
77
13
192
21
20
27
30
1.98
4247727--4247897
93
1.8
93
92
0
288
21
21
28
29
1.98
4250298--4250329
16
2.0
16
100
0
64
31
25
6
37
1.81
4254780--4254869
28
3.1
28
69
20
76
48
4
0
46
1.22
4254738--4255552
59
14.2
59
84
5
1077
45
5
3
46
1.41
4254865--4254902
19
2.0
20
89
5
60
42
2
5
50
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4255052--4255471
216
1.9
217
89
3
648
45
4
3
46
1.38
4255431--4255480
19
2.3
21
74
22
50
48
0
8
44
1.32
4255560--4255609
25
2.0
25
100
0
100
52
16
0
32
1.44
4261966--4261991
3
8.7
3
100
0
52
69
0
0
30
0.89
4268546--4268614
28
2.4
29
82
2
86
53
30
0
15
1.43
4268992--4269047
29
1.9
29
100
0
112
50
3
0
46
1.19
4274478--4274514
18
2.1
18
90
10
58
45
37
0
16
1.47
4277656--4277709
17
3.5
15
73
11
56
74
3
18
3
1.12
4278211--4278411
100
2.0
100
99
0
393
37
13
16
32
1.88
4278706--4278845
40
3.5
40
75
10
135
27
18
24
29
1.98
4279704--4279977
46
5.9
47
89
2
360
20
25
15
38
1.92
4282104--4282155
11
4.7
11
76
9
52
63
3
0
32
1.12
4287430--4287485
27
2.1
27
100
0
112
46
7
12
33
1.69
4288040--4288065
4
6.5
4
100
0
52
76
0
23
0
0.78
4295850--4295908
10
6.2
10
75
11
52
40
0
10
49
1.37
4295877--4295904
2
14.0
2
100
0
56
50
0
0
50
1.00
4298149--4298273
2
64.5
2
82
9
125
52
1
1
44
1.20
4299544--4299578
17
1.9
17
88
11
52
34
0
0
65
0.93
4305368--4305396
13
2.1
14
93
6
51
65
0
3
31
1.09
4306127--4306203
33
2.3
33
84
0
100
24
27
22
25
2.00
4311285--4311318
13
2.5
14
85
4
52
55
0
2
41
1.15
4314911--4314960
26
2.0
25
84
4
64
64
0
32
4
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4322522--4322960
162
2.6
168
83
6
516
39
17
12
30
1.87
4333552--4333714
45
3.6
45
78
6
211
33
20
25
20
1.97
4333597--4333753
47
3.4
46
74
10
167
34
22
22
21
1.97
4333551--4333796
92
2.6
92
92
3
386
34
21
23
21
1.97
4333768--4333890
47
2.6
47
84
0
174
38
14
21
26
1.92
4333876--4334064
55
3.5
54
80
6
188
37
17
22
22
1.94
4333933--4334080
53
2.8
53
80
5
156
37
17
23
20
1.94
4337435--4337492
27
2.1
27
83
0
71
18
24
41
15
1.89
4337622--4337789
31
5.5
30
69
13
110
40
4
4
51
1.40
4337619--4337792
61
2.8
60
81
4
213
41
4
4
50
1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410