genome.fa.s13.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  147  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44596621--44596788	40	4.2	40	80	3	169	24	26	22	26	2.00
44599948--44600106	38	4.1	38	88	3	228	22	23	25	28	1.99
44600104--44600215	43	2.6	43	88	0	170	15	24	30	30	1.95
44602071--44602115	23	2.1	20	88	12	63	28	24	6	40	1.80
44602382--44602511	67	2.0	67	92	1	217	31	30	11	26	1.91
44604255--44604327	37	2.0	37	100	0	146	20	27	13	38	1.90
44612894--44613109	108	2.0	108	88	3	319	25	22	14	37	1.92
44621159--44621204	19	2.3	20	92	3	76	26	6	15	52	1.67
44621290--44621371	26	3.1	25	85	5	92	41	1	1	56	1.15
44622621--44622661	21	2.0	21	85	9	57	48	21	0	29	1.50
44622631--44622696	25	3.0	21	73	16	69	53	16	1	28	1.52
44622655--44622736	32	2.6	32	76	1	94	56	15	2	25	1.52
44622901--44622948	12	4.1	12	76	15	55	2	33	4	60	1.27
44622898--44622944	23	2.0	23	100	0	94	4	36	4	55	1.39
44624807--44624873	32	2.1	32	97	0	125	11	13	11	62	1.54
44625274--44626666	464	3.0	464	90	5	2248	40	17	12	29	1.86
44626142--44626181	18	2.2	18	100	0	80	47	12	5	35	1.63
44628798--44628983	3	63.0	3	74	10	134	61	2	5	30	1.32
44628811--44628949	44	3.0	46	86	8	167	64	3	4	27	1.29
44630573--44630616	20	2.2	20	91	0	70	40	0	2	56	1.11
44630678--44630734	15	3.5	15	73	17	60	50	1	0	47	1.11
44631563--44631600	19	2.1	19	85	5	51	50	13	0	36	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44634962--44634992	16	1.9	16	100	0	62	51	0	0	48	1.00
44635555--44635636	26	3.2	26	82	6	96	36	4	20	37	1.74
44645208--44645384	60	2.9	60	75	14	150	27	24	19	27	1.99
44645372--44645411	20	2.0	20	85	9	55	27	20	20	32	1.97
44649400--44649445	20	2.3	20	82	14	60	26	26	17	30	1.97
44649412--44649454	19	2.2	20	83	4	52	34	25	18	20	1.96
44656032--44656105	39	1.9	38	94	2	130	21	18	20	39	1.93
44659959--44660221	46	5.6	48	80	7	233	23	30	17	28	1.97
44659960--44660221	94	2.8	95	79	8	263	23	30	17	28	1.97
44663185--44663363	49	3.7	48	80	8	168	24	29	20	26	1.99
44663187--44663414	49	4.7	47	76	12	167	25	29	19	25	1.98
44663236--44663416	48	3.7	50	78	7	151	25	29	18	25	1.98
44663888--44663961	30	2.5	30	100	0	148	32	27	9	31	1.88
44666337--44666361	11	2.3	11	100	0	50	8	28	0	64	1.22
44667613--44667664	25	2.1	25	85	0	68	36	9	15	38	1.80
44670308--44670335	2	14.0	2	100	0	56	50	0	0	50	1.00
44671052--44671095	22	2.0	23	86	4	63	31	0	2	65	1.05
44671824--44671859	18	2.1	18	89	5	56	38	5	0	55	1.23
44680377--44680410	12	2.7	13	86	9	52	0	20	5	73	1.04
44681019--44681071	21	2.5	21	84	0	70	13	32	35	18	1.90
44683956--44683994	12	3.2	12	82	13	53	2	12	7	76	1.09
44684590--44684676	21	4.2	21	73	1	68	18	34	31	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44690981--44691010	3	10.3	3	92	7	53	70	0	0	30	0.88
44703271--44703628	47	7.7	45	78	9	312	24	29	18	26	1.98
44703218--44703627	141	2.9	141	85	5	499	23	29	19	27	1.98
44703221--44703629	94	4.4	93	77	9	332	24	29	19	27	1.98
44704451--44704533	41	2.0	41	97	0	157	44	4	31	19	1.71
44710477--44710604	63	2.0	63	100	0	256	43	10	15	29	1.81
44716302--44716327	11	2.4	11	100	0	52	0	7	0	92	0.39
44719390--44719482	29	3.2	29	87	0	123	33	16	27	22	1.95
44719390--44719495	29	3.7	29	82	5	115	30	16	31	22	1.95
44727184--44727276	29	3.2	29	87	0	123	33	16	27	22	1.95
44727184--44727289	29	3.7	29	82	5	115	30	16	31	22	1.95
44730308--44730369	27	2.3	27	88	0	88	20	24	12	41	1.87
44730793--44730821	13	2.1	14	93	6	51	20	13	10	55	1.68
44732820--44732869	23	2.2	23	82	7	57	54	12	10	24	1.67
44733297--44733351	27	2.2	24	83	9	65	36	7	9	47	1.63
44741114--44741246	46	2.7	50	78	11	141	30	30	15	24	1.95
44741160--44741319	52	3.1	51	80	9	162	31	26	16	26	1.96
44743988--44744048	30	2.0	30	83	0	77	39	4	22	32	1.76
44744712--44744861	67	2.3	64	80	8	160	29	16	28	26	1.96
44744851--44745048	50	4.0	50	87	1	272	26	18	26	29	1.98
44746135--44746161	2	13.5	2	100	0	54	48	0	0	51	1.00
44747501--44747672	46	3.8	45	80	11	215	21	21	27	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44747498--44747667	92	1.8	92	96	0	313	21	21	28	28	1.99
44755071--44755242	46	3.8	45	80	11	215	21	21	27	29	1.99
44755068--44755237	92	1.8	92	96	0	313	21	21	28	28	1.99
44757648--44757702	21	2.5	22	82	11	69	45	0	7	47	1.30
44757659--44757706	21	2.4	20	86	10	71	50	0	4	45	1.21
44757765--44757812	19	2.6	19	75	15	55	60	8	4	27	1.44
44757838--44757881	2	22.0	2	95	0	79	47	0	2	50	1.13
44757955--44757995	20	2.0	21	90	4	66	73	0	26	0	0.84
44759852--44760113	46	5.7	46	88	3	350	40	11	25	22	1.87
44759873--44760113	91	2.6	91	88	3	333	41	12	25	21	1.87
44759852--44760113	137	1.9	138	85	3	359	40	11	25	22	1.87
44759866--44760144	137	2.0	137	82	5	341	41	12	23	21	1.88
44760403--44760435	17	2.0	17	94	5	59	48	0	15	36	1.45
44762755--44762809	20	2.6	21	78	18	60	47	0	7	45	1.30
44762782--44762848	29	2.2	33	81	13	88	50	0	4	44	1.22
44762869--44763045	85	2.1	87	96	2	331	49	6	6	37	1.56
44763035--44763068	2	17.5	2	93	6	61	47	0	0	52	1.00
44763034--44763071	17	2.2	17	100	0	76	44	0	0	55	0.99
44763037--44763066	15	2.0	15	100	0	60	46	0	0	53	1.00
44764980--44765117	54	2.6	54	96	0	258	28	19	22	29	1.98
44765151--44765516	46	7.9	46	89	3	459	41	13	23	21	1.89
44765263--44765343	24	3.5	24	65	19	62	40	12	24	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44765401--44765475	24	3.2	24	63	30	61	41	14	25	18	1.89
44765799--44765831	17	2.0	17	88	5	50	48	0	12	39	1.40
44768310--44768441	64	2.0	66	97	2	250	33	9	19	37	1.84
44770287--44770313	13	2.1	13	100	0	54	37	14	25	22	1.93
44773101--44773298	39	5.1	39	92	1	335	24	31	22	21	1.98
44777671--44777771	21	5.0	20	72	9	64	52	3	2	40	1.35
44791637--44791733	36	2.6	36	77	8	88	32	13	16	37	1.88
44792919--44792964	24	1.9	24	91	8	76	41	15	10	32	1.82
44795253--44795308	27	2.0	27	83	10	69	64	3	1	30	1.21
44795477--44795591	56	2.1	56	100	0	230	36	5	3	54	1.40
44795569--44795603	2	17.5	2	100	0	70	51	0	0	48	1.00
44797023--44797152	67	1.9	67	96	0	242	38	5	14	41	1.69
44800538--44800567	2	15.0	2	100	0	60	50	0	0	50	1.00
44800567--44800596	2	15.0	2	92	0	51	3	0	46	50	1.18
44808209--44808235	14	1.9	14	100	0	54	51	14	0	33	1.43
44808936--44809013	25	3.2	25	67	29	76	51	10	5	33	1.58
44808916--44809014	49	2.0	49	100	0	198	52	10	6	31	1.59
44814502--44814531	12	2.5	12	94	0	51	10	20	40	30	1.85
44819713--44819944	79	2.9	79	94	1	403	25	27	22	25	2.00
44819711--44819967	40	6.5	40	85	3	333	26	27	21	24	1.99
44819711--44819974	119	2.2	121	85	4	349	25	27	22	24	2.00
44819711--44819974	79	3.3	79	90	3	388	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44822760--44822943	40	4.6	39	75	6	138	26	23	27	22	2.00
44822800--44822988	80	2.4	81	77	4	186	23	24	29	22	1.99
44829747--44829929	40	4.6	39	75	7	138	26	23	27	22	1.99
44829790--44829938	80	1.9	80	81	2	183	22	24	30	22	1.99
44829786--44829967	80	2.3	81	77	4	181	23	24	29	22	1.99
44837830--44837977	40	3.8	38	74	8	111	28	22	27	22	1.99
44840029--44840127	28	3.5	28	87	4	119	27	15	27	30	1.96
44852268--44852315	25	1.9	25	91	8	80	37	12	8	41	1.73
44855739--44855768	12	2.6	11	90	10	51	26	3	0	70	1.03
44864223--44864807	27	21.7	27	90	0	900	34	13	14	37	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410