genome.fa.s13.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  172  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52765360--52765397	20	1.9	20	88	0	58	34	2	10	52	1.50
52767023--52767091	28	2.5	28	95	2	122	43	27	10	18	1.82
52773366--52773403	20	1.9	20	88	0	58	34	2	10	52	1.50
52775030--52775096	27	2.5	27	92	4	109	44	25	10	19	1.82
52776861--52776961	28	3.5	28	86	6	114	29	13	26	29	1.94
52778338--52778440	29	3.5	29	91	2	152	33	13	26	26	1.93
52784651--52784686	18	1.9	19	88	5	56	63	0	25	11	1.27
52785954--52786086	29	4.5	30	92	3	207	34	13	25	26	1.93
52785954--52786086	59	2.2	60	93	1	223	34	13	25	26	1.93
52791046--52791083	20	1.9	20	88	0	58	52	10	2	34	1.50
52792749--52792920	93	1.8	93	96	0	317	27	29	21	20	1.98
52792742--52792917	46	3.8	46	79	12	216	28	29	21	20	1.98
52799655--52799826	93	1.8	93	96	0	317	27	29	21	20	1.98
52799648--52799823	46	3.8	46	79	12	216	28	29	21	20	1.98
52811890--52812098	101	2.1	101	85	3	278	30	17	23	28	1.97
52816824--52816968	42	3.4	42	75	11	152	24	18	26	29	1.98
52817609--52817661	22	2.4	21	81	6	61	28	1	26	43	1.65
52818882--52819037	43	3.7	43	75	14	162	24	18	26	30	1.98
52818874--52819029	85	1.8	85	85	8	219	25	18	25	31	1.98
52834149--52834250	28	3.5	29	81	6	109	28	27	14	29	1.95
52842039--52842140	28	3.5	29	81	6	109	28	27	14	29	1.95
52847503--52847637	28	4.8	28	88	0	189	29	24	10	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52847503--52847661	84	1.9	84	81	2	194	28	23	11	35	1.91
52850711--52850867	44	3.7	42	75	10	158	24	19	25	30	1.98
52850711--52850867	43	3.7	43	75	7	151	24	19	25	30	1.98
52853567--52853659	31	3.0	31	90	3	143	30	24	16	29	1.96
52853858--52853939	25	3.3	25	80	8	78	24	20	19	35	1.96
52853843--52853914	25	2.9	23	82	12	72	27	19	18	34	1.95
52854851--52855100	27	9.2	27	76	6	164	31	10	18	39	1.84
52854918--52855067	81	1.9	81	86	8	216	29	8	20	42	1.81
52854914--52855100	81	2.3	81	81	9	213	29	10	19	40	1.85
52855099--52855309	81	2.6	81	90	1	325	40	7	23	28	1.81
52855099--52855311	27	7.9	27	88	2	293	39	7	23	29	1.82
52855099--52855378	81	3.5	81	82	5	264	38	8	22	31	1.83
52855323--52855417	27	3.6	27	84	8	131	29	8	20	42	1.81
52858375--52858464	29	3.1	29	86	10	123	26	12	31	30	1.92
52861069--52861177	48	2.3	48	96	0	200	34	5	28	31	1.80
52861318--52861420	37	2.8	37	90	0	161	23	20	31	25	1.98
52865990--52866077	28	3.1	29	82	4	101	29	11	27	31	1.91
52873791--52873868	26	3.0	26	86	1	93	35	25	23	15	1.94
52873821--52873889	27	2.6	27	92	0	111	36	21	23	18	1.95
52878391--52878496	38	2.7	39	86	5	151	26	19	29	24	1.99
52878397--52878534	40	3.5	40	87	3	174	23	21	30	24	1.99
52886363--52886469	39	2.7	39	86	2	151	26	20	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52886369--52886498	40	3.3	40	89	3	183	23	22	29	24	1.99
52889066--52889104	19	2.1	19	85	9	53	28	23	2	46	1.65
52893331--52893357	2	13.5	2	100	0	54	51	48	0	0	1.00
52893357--52893385	2	14.5	2	100	0	58	51	0	48	0	1.00
52899400--52899428	13	2.2	13	100	0	58	62	10	0	27	1.28
52899659--52899701	10	4.2	10	80	13	52	44	23	18	13	1.86
52899659--52899701	21	2.1	21	91	4	70	44	23	18	13	1.86
52900790--52900841	21	2.5	21	80	0	59	5	25	1	67	1.23
52903350--52903516	40	4.2	40	82	2	185	25	27	21	25	1.99
52903350--52903516	80	2.1	79	83	7	205	25	27	21	25	1.99
52904343--52904388	17	2.5	19	74	22	53	34	23	17	23	1.96
52907318--52907346	13	2.2	13	100	0	58	62	10	0	27	1.28
52908351--52908483	47	2.9	43	79	12	142	26	30	17	26	1.97
52912659--52912714	24	2.3	25	84	3	69	39	12	10	37	1.78
52913447--52913510	18	3.6	18	97	0	119	64	6	1	28	1.27
52926193--52926312	39	3.1	39	91	0	186	24	27	20	28	1.99
52926864--52926904	2	21.0	2	85	5	57	48	2	2	46	1.28
52927610--52927650	21	2.0	21	85	9	57	36	24	2	36	1.69
52929534--52929587	21	2.6	21	96	0	99	24	31	29	14	1.95
52930608--52930782	45	4.0	45	91	5	252	26	28	20	24	1.99
52933878--52934068	40	4.8	40	89	1	276	23	19	29	28	1.98
52933861--52934072	80	2.7	80	88	3	304	23	20	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52937819--52937849	2	15.5	2	93	0	53	48	3	0	48	1.17
52940450--52940582	65	2.0	65	95	0	239	30	9	21	39	1.85
52945791--52945972	39	4.6	40	86	0	208	21	30	23	25	1.99
52952390--52952443	21	2.6	21	85	5	65	25	31	25	16	1.97
52964498--52964524	14	1.9	14	100	0	54	48	14	7	29	1.71
52971080--52971161	34	2.4	34	86	8	105	25	25	24	24	2.00
52975485--52975585	28	3.5	28	86	6	114	29	13	26	29	1.94
52982139--52982194	22	2.7	21	81	10	71	78	3	12	5	1.05
52982921--52982985	29	2.2	29	91	2	103	32	16	27	23	1.96
52990508--52990675	45	3.7	45	77	12	173	22	18	28	30	1.97
52990503--52990670	91	1.8	92	89	3	268	22	19	29	29	1.98
52990900--52990937	19	2.0	20	85	15	53	36	0	23	39	1.55
52996075--52996133	19	3.3	19	65	26	56	45	3	10	40	1.54
52996065--52996134	34	2.1	34	100	0	140	45	2	11	40	1.55
52996522--52996729	67	3.2	64	76	12	199	31	17	29	22	1.96
53013637--53013706	27	2.6	27	97	2	131	31	27	12	28	1.93
53021560--53021629	27	2.6	27	97	2	131	31	27	12	28	1.93
53030238--53030310	29	2.5	29	88	4	103	26	16	31	26	1.96
53033161--53033343	39	4.6	39	87	0	240	24	22	30	22	1.99
53039763--53039911	40	3.8	40	83	4	185	23	27	22	26	2.00
53039731--53039951	80	2.8	80	80	3	214	23	27	22	26	2.00
53051998--53052179	39	4.6	39	86	0	238	24	21	30	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53056753--53056903	77	1.9	79	93	2	261	23	21	31	23	1.98
53056752--53056903	39	3.9	39	91	2	243	23	21	31	23	1.98
53056753--53056933	39	4.6	39	88	2	238	23	22	30	23	1.99
53064763--53064915	39	3.9	39	92	0	252	23	20	32	23	1.98
53064764--53064946	39	4.6	39	89	0	249	23	22	31	22	1.99
53064770--53064984	78	2.7	78	84	5	218	24	22	30	22	1.99
53073491--53073535	20	2.2	20	92	7	74	35	11	20	33	1.88
53073585--53073717	25	5.4	25	89	5	182	27	22	21	28	1.99
53073926--53073989	31	2.1	31	90	0	101	39	15	21	23	1.92
53081291--53081336	20	2.3	20	88	0	65	36	13	23	26	1.91
53081846--53081889	15	2.9	15	72	0	52	13	13	13	59	1.62
53088774--53088900	44	2.9	44	80	10	145	25	19	28	26	1.99
53088787--53088925	42	3.2	43	78	9	131	27	20	25	26	1.99
53095494--53095599	42	2.5	42	75	1	113	26	17	22	33	1.96
53099459--53099491	14	2.4	14	90	10	50	60	0	0	39	0.97
53104880--53105095	46	4.7	46	79	12	230	29	16	30	23	1.96
53104875--53105095	92	2.4	93	83	8	283	29	16	29	24	1.96
53104875--53105149	46	5.9	47	77	10	224	29	16	29	24	1.97
53107781--53107849	28	2.5	28	95	2	122	18	10	27	43	1.82
53109550--53109593	19	2.4	18	85	7	54	40	9	0	50	1.34
53111976--53112044	28	2.5	28	95	2	122	18	10	27	43	1.82
53113836--53113879	19	2.4	18	85	7	54	40	9	0	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53120871--53120947	24	3.2	24	79	5	84	38	2	41	16	1.63
53122559--53122592	17	2.0	17	88	11	52	47	8	14	29	1.75
53124425--53124605	67	2.8	64	75	12	172	28	16	30	23	1.96
53125671--53125701	2	15.5	2	100	0	62	48	0	0	51	1.00
53127634--53127667	16	2.2	15	89	5	50	44	0	0	55	0.99
53128427--53128480	25	2.1	26	86	10	76	31	3	1	62	1.23
53130393--53130423	16	1.9	16	93	0	53	35	22	0	41	1.54
53130390--53130429	20	2.0	20	85	0	53	37	22	0	40	1.54
53130612--53130865	55	4.8	54	78	10	242	20	25	18	35	1.95
53137960--53137990	16	1.9	16	93	0	53	35	22	0	41	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410