genome.fa.s13.2.7.7.80.10.50.1000.339.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  339  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104701275--104701355	15	5.5	15	81	11	87	69	0	1	29	0.97
104701262--104701364	32	3.1	32	76	16	102	66	0	0	32	1.05
104701399--104701455	29	2.0	29	92	0	96	66	0	0	33	0.92
104702510--104702540	8	3.9	8	91	0	53	16	0	35	48	1.46
104702834--104703225	45	8.8	44	68	11	210	27	27	14	30	1.95
104702834--104703229	176	2.2	178	87	3	591	27	27	14	30	1.95
104702834--104703225	90	4.4	90	88	3	569	27	27	14	30	1.95
104710163--104710193	16	1.9	16	100	0	62	22	25	12	38	1.90
104714924--104715023	3	32.7	3	74	22	84	66	0	1	33	0.99
104714927--104715023	22	4.6	21	73	22	87	65	0	1	32	0.99
104715057--104715112	29	2.0	29	89	3	87	64	0	0	35	0.94
104723271--104723323	21	2.5	22	76	20	58	54	3	1	39	1.29
104723741--104723801	23	2.6	24	72	12	63	47	0	1	50	1.10
104723749--104723801	23	2.3	23	83	9	72	45	0	1	52	1.11
104724924--104724979	19	3.1	18	80	10	60	58	3	0	37	1.15
104731510--104731546	16	2.4	16	86	8	51	37	2	18	40	1.65
104733390--104733447	26	2.2	26	96	0	107	39	3	18	37	1.68
104734601--104734690	23	4.0	23	80	12	87	24	22	18	34	1.96
104734613--104734707	23	4.1	24	86	6	108	25	21	20	33	1.97
104734567--104734713	69	2.1	69	80	8	165	25	20	19	35	1.95
104737933--104738031	20	4.9	20	75	0	90	39	24	21	15	1.91
104741470--104741519	25	2.0	26	84	4	66	36	26	20	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104741523--104741640	20	5.9	20	89	2	157	40	26	19	13	1.89
104741680--104741750	36	2.0	36	91	0	115	18	30	23	26	1.97
104751125--104751409	138	2.1	138	100	0	570	26	16	14	42	1.87
104752681--104752763	30	2.8	30	84	0	112	20	26	28	24	1.99
104754681--104754714	17	2.0	17	94	0	59	5	26	17	50	1.69
104759425--104759482	25	2.4	25	91	2	100	34	13	27	24	1.93
104761541--104761646	52	2.0	52	96	0	194	41	2	16	39	1.62
104761552--104761638	26	3.4	25	65	13	68	44	2	14	37	1.58
104764661--104764708	25	1.9	25	86	0	69	33	25	16	25	1.96
104764752--104764810	20	3.0	20	92	0	100	37	11	20	30	1.89
104764861--104764979	47	2.5	48	89	8	172	27	21	24	26	1.99
104764861--104764979	24	5.0	24	84	9	154	27	21	24	26	1.99
104765171--104765271	38	3.1	31	79	19	123	39	14	21	23	1.91
104765187--104765294	38	2.8	38	94	1	189	39	14	22	23	1.91
104771881--104771928	25	1.9	25	86	0	69	33	25	16	25	1.96
104771972--104772030	20	3.0	20	92	0	100	37	11	20	30	1.89
104772081--104772199	47	2.5	48	89	8	172	27	21	24	26	1.99
104772081--104772199	24	5.0	24	84	9	154	27	21	24	26	1.99
104772391--104772492	31	3.1	31	78	17	123	39	15	21	23	1.92
104772408--104772515	38	2.8	38	94	1	189	39	14	22	23	1.91
104778878--104778951	29	2.5	29	88	4	103	50	16	14	18	1.79
104779275--104779342	24	2.9	23	75	12	59	44	1	2	51	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104779230--104779398	63	2.7	62	86	8	204	42	1	2	53	1.26
104779576--104779630	16	3.4	16	87	0	83	29	27	7	36	1.84
104785519--104785694	50	3.5	50	90	0	262	33	15	24	26	1.95
104785670--104785818	31	4.8	31	88	0	217	28	18	24	27	1.98
104791383--104791523	43	3.3	41	74	10	113	26	18	25	29	1.98
104799551--104799608	27	2.1	27	100	0	116	34	0	46	18	1.50
104815434--104815481	19	2.6	19	80	3	62	37	4	10	47	1.57
104822811--104822874	17	3.8	16	77	10	56	32	29	20	17	1.95
104824223--104824251	7	4.3	7	95	4	51	10	89	0	0	0.48
104829056--104829147	43	2.2	43	84	5	116	53	10	6	29	1.61
104829169--104829208	19	2.2	18	86	13	55	42	15	2	40	1.60
104833784--104833875	43	2.2	43	92	5	152	52	14	5	28	1.63
104833897--104833936	19	2.2	18	86	13	55	42	15	2	40	1.60
104834574--104834615	20	2.1	20	86	0	57	40	4	0	54	1.21
104836534--104836617	26	3.2	26	64	12	73	45	1	13	40	1.51
104836520--104836625	52	2.0	52	100	0	212	42	1	15	40	1.57
104836524--104836604	26	3.2	24	63	13	63	43	2	16	38	1.61
104846518--104846573	23	2.4	23	93	0	94	44	14	12	28	1.81
104846735--104846767	2	16.5	2	100	0	66	51	0	0	48	1.00
104847294--104847328	2	17.5	2	100	0	70	51	0	0	48	1.00
104851474--104851612	39	3.6	39	92	1	217	35	24	27	12	1.91
104860406--104860441	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104861857--104861907	26	2.0	26	100	0	102	37	11	3	47	1.59
104869554--104869937	133	3.0	132	86	10	607	42	14	13	29	1.84
104869666--104869912	118	2.1	121	95	2	446	42	14	14	29	1.84
104879422--104879525	48	2.2	48	91	0	163	34	5	26	32	1.80
104879661--104879732	37	1.9	37	94	0	126	22	20	34	22	1.97
104884639--104884680	19	2.2	19	95	0	75	64	2	9	23	1.35
104888677--104888835	27	5.9	27	82	10	191	32	22	26	18	1.97
104888677--104888838	54	3.0	54	91	2	247	32	22	26	18	1.97
104899086--104899193	26	4.2	26	93	0	189	36	24	7	32	1.83
104904450--104904608	27	5.9	27	82	10	191	33	22	25	18	1.96
104904450--104904611	54	3.0	54	92	2	256	33	22	25	18	1.96
104906205--104906271	26	2.6	26	95	0	116	37	20	8	32	1.84
104908007--104908192	79	2.4	78	81	9	209	24	20	30	24	1.98
104908007--104908197	39	4.8	40	82	7	203	23	19	30	26	1.98
104911365--104911414	22	2.3	22	92	0	82	46	18	18	18	1.85
104911484--104911649	43	3.9	43	81	5	176	28	14	24	32	1.94
104921462--104921518	29	1.9	30	85	3	80	28	36	21	14	1.92
104922607--104922648	16	2.6	17	85	10	54	16	0	4	78	0.91
104922605--104922648	11	4.1	11	82	11	56	18	0	4	77	0.94
104926429--104926481	21	2.5	21	81	0	61	28	1	7	62	1.33
104926433--104926479	24	2.0	24	86	0	67	29	2	8	59	1.39
104928117--104928196	6	13.3	6	88	6	110	15	2	2	80	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104939681--104939705	2	12.5	2	100	0	50	52	0	0	48	1.00
104946510--104946558	16	3.2	16	83	13	59	65	0	34	0	0.93
104946837--104947281	115	3.8	116	88	6	645	31	1	15	52	1.51
104947092--104947117	8	3.2	8	100	0	52	23	0	23	53	1.46
104946849--104947281	236	1.8	235	90	5	705	30	1	15	52	1.51
104947068--104947325	115	2.3	109	75	16	263	28	0	17	53	1.50
104947377--104947441	18	3.5	18	74	15	69	29	0	9	61	1.27
104947378--104947444	22	3.3	22	68	23	74	29	0	8	61	1.27
104947363--104947443	38	2.1	38	100	0	162	30	0	7	61	1.23
104949241--104949403	70	2.3	71	97	1	310	19	28	18	34	1.95
104949241--104949437	70	2.8	70	90	4	249	20	28	17	32	1.96
104956292--104956478	71	2.7	68	93	5	281	18	28	18	34	1.95
104956315--104956478	71	2.3	71	100	0	328	18	28	17	35	1.94
104956315--104956512	71	2.8	70	91	3	258	20	28	17	33	1.95
104958803--104958914	33	3.4	32	76	11	93	18	43	10	26	1.83
104961512--104961619	44	2.4	44	87	3	144	29	23	13	33	1.93
104968899--104969006	44	2.4	44	87	3	144	29	23	13	33	1.93
104972469--104972521	27	2.0	27	96	0	97	33	28	22	15	1.94
104972472--104972564	27	3.5	26	80	5	96	31	25	25	17	1.97
104973635--104973729	29	3.3	26	72	16	73	42	1	2	54	1.19
104973632--104973726	20	4.9	19	73	11	86	43	1	2	53	1.19
104974338--104974391	20	2.8	19	81	10	65	70	1	3	24	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104975248--104975313	13	5.5	13	72	20	63	50	10	0	39	1.37
104975249--104975316	23	3.0	23	93	4	111	50	8	0	41	1.34
104980620--104980652	8	4.1	8	100	0	66	75	0	0	24	0.80
104995855--104995901	24	2.0	24	91	4	78	48	36	4	10	1.57
104995884--104995984	28	3.5	28	77	20	102	45	29	5	18	1.73
104995908--104995988	27	2.9	27	82	12	92	44	28	4	22	1.73
104996214--104996284	28	2.4	30	76	11	83	47	32	4	15	1.65
104999341--104999411	24	3.0	24	95	0	124	35	1	38	25	1.65
104999341--104999434	48	1.9	48	81	10	111	35	4	37	23	1.75
105000829--105000938	27	4.1	27	81	8	125	15	22	23	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410