Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  340  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105000829--105000938
54
2.0
54
85
3
150
15
22
23
38
1.92
105001924--105001995
31
2.4
30
73
22
71
61
2
0
36
1.11
105002550--105002619
23
3.0
23
82
18
90
2
25
4
67
1.23
105002548--105002619
22
3.0
23
84
15
94
4
25
4
66
1.27
105006453--105006621
46
3.6
46
79
10
184
28
17
28
25
1.98
105006548--105006658
46
2.5
44
83
7
125
28
16
27
27
1.97
105008774--105008802
14
2.0
15
93
6
51
27
0
44
27
1.54
105018722--105018749
8
3.5
8
100
0
56
64
21
0
14
1.29
105025927--105025956
12
2.5
12
88
0
51
10
16
0
73
1.09
105026689--105026725
13
2.8
13
91
0
65
40
24
8
27
1.83
105027312--105027352
21
1.9
22
85
5
57
46
21
12
19
1.82
105027449--105027527
22
3.7
22
73
11
67
53
24
1
21
1.54
105027601--105027671
28
2.5
28
84
4
90
50
29
1
18
1.55
105027737--105027796
13
4.5
13
74
12
50
46
33
1
18
1.59
105027720--105027810
20
4.5
20
70
16
55
46
29
2
21
1.64
105030906--105031024
32
3.7
31
66
13
71
33
1
2
62
1.19
105030954--105031115
15
10.4
16
68
15
83
30
6
1
61
1.28
105030967--105031020
19
2.7
20
80
11
56
31
3
1
62
1.23
105030964--105031052
29
3.1
29
80
18
96
31
3
1
64
1.17
105031073--105031108
7
5.0
7
86
6
54
30
2
0
66
1.06
105034467--105034751
136
2.1
136
98
0
552
31
25
18
24
1.98
105034758--105034805
21
2.3
21
85
7
62
33
52
2
12
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105036517--105036626
26
4.2
26
92
0
175
37
23
5
33
1.78
105045789--105045821
3
11.0
3
93
0
57
33
3
33
30
1.73
105053433--105053498
3
22.0
3
100
0
132
33
0
0
66
0.92
105061111--105061159
3
16.3
3
100
0
98
32
0
0
67
0.91
105061175--105061228
28
2.0
26
82
13
65
40
11
14
33
1.82
105063328--105063365
20
1.9
20
100
0
76
21
36
31
10
1.87
105065910--105066015
28
3.7
27
70
23
74
26
27
18
27
1.98
105067844--105067961
31
3.5
35
87
9
126
22
22
16
37
1.94
105067867--105067961
31
3.1
31
96
0
172
24
21
15
38
1.92
105068153--105068319
24
7.0
24
93
3
257
26
22
22
28
1.99
105068152--105068319
71
2.3
71
90
4
257
26
22
22
29
1.99
105068370--105068429
20
3.0
20
90
0
102
33
20
11
35
1.88
105068472--105068519
25
1.9
25
86
0
69
25
16
25
33
1.96
105069677--105069741
27
2.4
27
84
5
87
20
24
20
35
1.96
105069795--105069850
27
2.1
26
83
9
69
39
12
10
37
1.78
105069803--105069943
27
5.1
27
72
13
99
31
8
19
40
1.82
105069920--105070294
27
13.9
27
85
4
461
40
8
23
27
1.84
105069875--105070292
81
5.1
81
84
3
455
38
8
23
29
1.84
105070218--105070432
27
8.0
26
82
6
137
33
9
21
35
1.87
105072560--105072588
15
1.9
15
100
0
58
58
0
0
41
0.98
105077533--105077565
18
1.9
17
88
11
50
30
15
12
42
1.83
105078252--105078284
18
1.9
17
88
11
50
30
15
12
42
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105077410--105078847
720
2.0
719
95
0
2563
34
18
16
30
1.93
105086435--105086671
21
11.4
21
77
2
183
18
20
15
45
1.86
105086436--105086671
42
5.7
42
82
3
280
19
19
15
45
1.86
105089311--105089391
39
2.1
38
90
4
128
32
14
12
40
1.83
105097540--105097809
94
2.9
94
82
5
276
30
21
27
21
1.98
105097540--105097759
47
4.7
45
74
14
146
28
20
28
21
1.98
105097674--105097808
47
2.9
46
79
15
150
30
22
26
20
1.98
105106110--105106172
30
2.1
30
90
0
99
34
12
25
26
1.92
105106512--105106767
47
5.4
46
72
15
191
28
20
28
22
1.99
105106512--105106767
94
2.7
94
83
4
302
28
20
28
22
1.99
105113504--105113561
30
1.9
30
89
0
89
31
12
27
29
1.92
105113901--105114259
47
7.7
45
75
10
287
27
20
30
22
1.98
105113904--105114263
93
3.9
92
80
9
385
27
20
30
21
1.98
105113901--105114263
187
1.9
186
83
6
466
27
20
30
21
1.98
105117063--105117106
1
44.0
1
81
0
52
2
6
0
90
0.51
105117063--105117106
20
2.2
20
92
8
72
2
6
0
90
0.51
105117065--105117106
17
2.4
17
92
4
66
2
7
0
90
0.53
105118244--105118348
42
2.5
42
88
0
147
24
11
34
29
1.91
105118455--105118533
5
14.8
5
79
10
61
77
0
3
18
0.92
105118469--105118533
30
2.2
29
75
10
69
76
0
4
18
0.95
105118456--105118534
35
2.3
35
82
8
90
77
0
5
17
0.95
105123825--105123879
21
2.6
21
85
0
65
29
23
30
16
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105126775--105126802
14
2.0
14
100
0
56
21
21
7
50
1.72
105133936--105133966
11
2.8
11
95
0
53
29
0
0
70
0.87
105134085--105134149
32
2.1
30
86
11
87
58
10
4
26
1.51
105134126--105134158
17
1.9
17
88
11
50
69
3
6
21
1.24
105134156--105134223
32
2.1
32
100
0
136
54
14
2
27
1.55
105141704--105141814
21
5.1
21
69
12
64
52
2
2
42
1.30
105156742--105156859
24
4.9
24
85
8
152
28
22
22
27
1.99
105156742--105156860
48
2.5
48
89
5
170
28
21
21
27
1.99
105156907--105156977
20
3.5
20
92
0
115
32
19
11
36
1.87
105159309--105159349
21
2.0
20
90
4
64
48
21
0
29
1.50
105161113--105161163
19
2.6
19
79
17
59
37
9
11
41
1.75
105161310--105161357
20
2.4
21
86
10
73
22
14
14
47
1.81
105167860--105167905
25
1.9
23
86
8
65
32
0
4
63
1.14
105168690--105168717
13
2.2
13
100
0
56
46
0
0
53
1.00
105169132--105169156
12
2.1
12
100
0
50
68
8
0
24
1.16
105169527--105169599
3
24.3
3
90
0
101
4
30
1
64
1.20
105171390--105171473
26
3.2
26
96
0
150
33
4
25
36
1.77
105172653--105172679
8
3.4
8
100
0
54
55
22
22
0
1.44
105175107--105175308
103
2.0
103
88
2
298
33
10
10
45
1.72
105175334--105175381
10
4.5
11
82
10
55
35
2
2
60
1.20
105181739--105181778
12
3.3
12
85
0
53
25
27
25
22
2.00
105189898--105189958
30
2.0
30
87
0
86
24
37
26
11
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105191043--105191087
23
2.0
23
83
8
58
20
2
2
75
1.01
105194171--105194227
30
1.9
30
89
7
89
19
31
36
12
1.89
105193984--105194340
198
1.8
198
85
1
500
27
26
29
17
1.97
105194437--105194505
7
9.9
7
81
12
54
27
0
0
72
0.85
105194433--105194465
17
1.9
17
93
0
57
27
0
0
72
0.85
105194439--105194492
23
2.5
21
84
6
72
25
0
0
74
0.83
105194448--105194504
6
8.7
6
79
12
51
28
0
0
71
0.86
105194593--105194656
3
21.3
3
100
0
128
32
0
0
67
0.91
105195644--105195683
10
3.9
10
93
6
71
80
0
10
10
0.92
105195644--105195682
11
3.6
11
93
3
62
82
0
10
7
0.86
105195644--105195683
21
1.9
21
94
0
71
80
0
10
10
0.92
105197601--105197645
23
2.0
23
83
8
58
20
2
2
75
1.01
105208801--105208882
41
2.0
41
100
0
164
53
4
19
21
1.63
105210475--105210536
20
3.1
21
82
11
60
50
0
1
48
1.10
105216312--105216363
26
2.0
26
100
0
104
19
11
7
61
1.53
105220862--105220899
19
2.0
20
85
15
53
39
2
0
57
1.12
105221274--105221340
32
2.1
32
100
0
134
38
2
0
58
1.14
105231078--105231349
43
6.3
43
84
1
314
28
29
17
24
1.97
105231359--105231396
20
2.0
20
89
5
60
42
0
0
57
0.98
105233356--105233391
18
2.0
18
94
0
63
47
8
5
38
1.57
105234017--105234093
38
2.0
38
94
0
136
20
35
15
28
1.94
105234511--105234569
6
9.3
6
76
9
55
16
1
3
77
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105234509--105234546
13
2.9
13
84
11
51
18
0
2
78
0.86
105234511--105234569
19
3.1
19
80
14
68
16
1
3
77
0.98
105234843--105234893
13
3.8
13
73
14
50
47
31
0
21
1.51
105235656--105235788
41
3.3
41
83
1
160
18
20
26
35
1.95
105237578--105237729
68
2.2
68
85
2
198
21
22
17
38
1.93
105241642--105241776
45
3.0
45
98
1
261
56
12
8
22
1.64
105249104--105249143
20
2.0
20
100
0
80
25
25
5
45
1.73
105249575--105249676
29
3.5
29
71
14
77
26
28
17
27
1.98
105249655--105249788
60
2.2
60
85
1
178
27
25
14
32
1.95
105251049--105251090
2
21.5
2
95
4
77
50
0
0
50
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410