genome.fa.s13.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  158  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48055175--48055202	6	4.7	6	100	0	56	85	0	0	14	0.59
48055152--48055197	20	2.2	20	88	3	65	80	0	4	15	0.86
48065105--48065356	45	5.6	45	93	1	375	23	22	26	27	1.99
48069579--48069652	31	2.4	31	88	2	105	28	24	17	29	1.97
48069871--48069942	25	2.9	25	85	0	99	25	22	25	27	2.00
48069988--48070038	21	2.4	21	86	0	66	31	21	11	35	1.90
48070008--48070044	10	3.7	10	92	7	58	32	18	10	37	1.86
48077498--48077575	31	2.5	31	93	2	131	25	23	20	30	1.98
48077787--48077838	25	2.1	25	85	3	70	30	17	19	32	1.95
48077793--48077865	25	2.9	25	83	0	83	26	17	26	30	1.98
48077988--48078036	25	2.0	25	87	0	71	26	14	20	38	1.91
48081675--48081839	43	3.9	43	79	2	154	33	25	12	28	1.92
48081808--48081869	30	2.1	30	93	0	106	29	25	14	30	1.95
48086462--48086535	28	2.6	28	86	2	103	25	14	31	28	1.95
48086450--48086530	29	2.8	28	81	9	101	24	16	33	25	1.96
48086829--48086891	27	2.3	27	86	10	85	46	17	4	31	1.69
48086893--48086976	27	3.1	27	77	0	105	41	19	7	32	1.78
48086856--48086984	54	2.4	54	85	1	161	41	20	6	31	1.78
48091845--48091869	11	2.3	11	100	0	50	36	12	16	36	1.85
48097393--48097460	22	3.1	22	89	4	102	33	29	25	11	1.91
48105736--48105902	40	4.2	40	81	3	176	24	26	22	26	2.00
48113754--48113920	40	4.2	40	82	2	185	24	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48117167--48117334	40	4.2	40	82	1	185	24	26	22	26	2.00
48120601--48120721	43	2.9	42	80	7	154	33	17	23	25	1.96
48124705--48124729	2	12.5	2	100	0	50	52	0	0	48	1.00
48125815--48125935	43	2.9	42	76	7	127	32	15	23	28	1.95
48142598--48142640	15	2.9	15	89	0	59	18	13	11	55	1.68
48146424--48146590	40	4.2	41	80	5	164	24	26	22	26	2.00
48147415--48147460	17	2.5	19	74	22	53	34	23	17	23	1.96
48158818--48158959	40	3.5	40	83	1	124	27	23	26	22	1.99
48158857--48158985	40	3.2	39	84	6	152	24	22	27	25	2.00
48166079--48166137	31	1.9	31	100	0	118	40	37	5	16	1.71
48172362--48172433	36	2.0	36	97	0	135	41	19	4	34	1.71
48175216--48175338	43	2.9	43	82	2	140	25	16	27	30	1.96
48179678--48179823	41	3.6	41	84	3	206	28	28	23	20	1.99
48183517--48183590	29	2.6	29	95	0	139	27	14	31	27	1.95
48183574--48183649	29	2.6	29	78	0	89	22	19	35	22	1.96
48183517--48183649	58	2.3	58	80	2	133	24	17	33	24	1.96
48191377--48191450	29	2.6	29	95	0	139	27	14	31	27	1.95
48191434--48191509	29	2.6	29	78	0	89	22	19	35	22	1.96
48191377--48191509	58	2.3	58	80	2	133	24	17	33	24	1.96
48197894--48198039	40	3.7	40	76	12	138	26	25	26	21	1.99
48197931--48198060	40	3.2	40	79	2	145	24	23	27	23	2.00
48197893--48198060	80	2.1	80	80	4	187	26	24	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48210747--48210777	14	2.2	14	94	0	53	9	25	32	32	1.88
48226562--48226589	5	5.6	5	100	0	56	0	0	35	64	0.94
48228464--48228650	39	4.8	39	87	2	214	24	31	21	23	1.99
48228469--48228650	77	2.3	79	86	3	251	23	30	21	24	1.99
48228500--48228651	39	3.9	39	90	2	234	23	31	20	24	1.98
48235754--48235941	39	4.8	39	88	0	223	23	30	21	23	1.99
48235790--48235942	39	3.9	39	92	0	243	23	31	20	24	1.98
48235759--48235941	78	2.3	79	88	1	260	22	30	22	24	1.99
48241779--48241946	46	3.7	46	71	16	141	29	29	19	22	1.98
48241786--48241955	92	1.8	92	88	2	261	28	29	20	22	1.98
48241787--48241971	46	4.0	45	69	18	114	28	29	19	22	1.98
48244328--48244376	26	1.9	26	91	4	82	57	18	16	8	1.63
48244362--48244402	15	2.7	15	88	0	64	58	9	19	12	1.61
48244364--48244411	15	3.2	15	79	5	53	56	14	16	12	1.68
48247317--48247488	93	1.8	93	96	0	317	27	29	21	20	1.98
48247310--48247485	46	3.8	46	79	12	216	28	29	21	20	1.98
48250126--48250262	56	2.4	56	86	0	202	32	23	13	29	1.93
48251404--48251432	14	2.0	15	93	6	51	48	20	0	31	1.50
48255345--48255407	30	2.1	30	100	0	126	42	17	9	30	1.81
48257710--48257861	40	3.8	40	77	6	139	22	25	23	28	1.99
48257710--48257859	80	1.9	80	82	8	189	22	26	24	28	1.99
48262410--48262453	21	2.1	21	91	0	70	34	13	18	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48262450--48262578	40	3.2	40	83	3	134	26	14	23	35	1.93
48265319--48265346	7	4.0	7	100	0	56	28	0	28	42	1.56
48265439--48265584	48	3.0	48	80	5	161	23	17	26	33	1.96
48271985--48272147	39	4.1	39	87	0	200	23	31	20	23	1.98
48272015--48272147	39	3.4	39	90	1	203	24	32	18	24	1.97
48273879--48274086	40	5.2	40	89	1	294	26	28	21	23	1.99
48276585--48276726	40	3.5	40	83	1	124	27	23	26	22	1.99
48276624--48276752	40	3.2	39	84	6	152	24	22	27	25	2.00
48284609--48284750	40	3.5	40	83	1	124	27	23	26	22	1.99
48284648--48284776	40	3.2	39	84	6	152	24	22	27	25	2.00
48289483--48289649	40	4.2	40	79	6	169	26	22	26	24	2.00
48293016--48293072	30	1.9	29	85	3	78	38	7	24	29	1.82
48293804--48293959	64	2.4	65	80	5	183	28	16	30	23	1.96
48298116--48298293	40	4.5	40	83	4	191	25	27	20	25	1.99
48303316--48303404	44	2.0	43	93	2	151	23	22	16	37	1.94
48305849--48305966	41	3.1	41	60	28	98	32	17	28	21	1.96
48305817--48305980	71	2.3	71	100	0	328	35	17	28	18	1.94
48313418--48313535	41	3.1	41	60	28	98	32	17	28	21	1.96
48313386--48313549	71	2.3	71	100	0	328	35	17	28	18	1.94
48325322--48325481	51	3.2	50	91	1	248	29	23	15	32	1.95
48333087--48333246	51	3.2	50	91	1	248	29	23	15	32	1.95
48354067--48354283	40	5.5	40	91	3	298	24	28	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48354081--48354283	79	2.5	79	89	3	293	25	29	24	21	1.99
48362151--48362368	40	5.5	40	92	2	316	24	28	24	22	1.99
48364413--48364445	16	2.1	16	94	0	57	39	15	6	39	1.72
48364596--48364752	43	3.7	43	79	3	174	28	24	18	28	1.98
48365346--48365375	15	2.0	15	93	0	51	56	16	0	26	1.40
48365895--48365923	14	2.0	15	93	6	51	48	20	0	31	1.50
48381718--48381755	19	2.0	20	85	15	53	39	23	0	36	1.55
48381984--48382155	93	1.8	93	91	2	283	29	27	19	23	1.98
48381980--48382149	46	3.7	47	79	13	199	30	27	18	23	1.98
48406849--48406886	19	2.0	20	85	15	53	39	23	0	36	1.55
48407111--48407282	46	3.7	46	78	13	208	29	26	20	23	1.99
48407116--48407284	93	1.8	93	94	0	302	28	27	20	23	1.99
48407500--48407526	8	3.4	8	100	0	54	37	25	0	37	1.57
48409161--48409269	24	4.6	23	85	7	137	33	23	17	24	1.96
48409161--48409269	48	2.3	48	91	3	175	33	23	17	24	1.96
48413514--48413676	39	4.2	39	92	0	254	22	20	32	24	1.98
48421388--48421550	39	4.2	39	93	0	263	23	20	31	24	1.98
48421388--48421580	39	4.9	39	90	0	251	23	21	31	23	1.98
48424982--48425083	29	3.5	29	87	0	141	24	33	14	27	1.94
48430858--48431033	46	3.8	46	80	12	225	21	21	28	28	1.98
48430855--48431025	93	1.8	93	96	0	315	21	21	29	28	1.98
48434289--48434451	70	2.3	71	97	1	310	34	18	28	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48441818--48441981	71	2.3	71	97	0	310	34	18	28	18	1.95
48444253--48444332	15	5.4	15	77	7	83	10	18	13	57	1.64
48444244--48444331	30	3.0	30	80	11	92	10	18	15	55	1.68
48446701--48446876	46	3.8	46	80	12	225	21	21	28	28	1.98
48446698--48446868	93	1.8	93	96	0	315	21	21	29	28	1.98
48451593--48451694	29	3.5	29	90	0	150	23	33	15	27	1.95
48454930--48454960	16	1.9	16	93	0	53	35	16	6	41	1.74
48455114--48455283	43	4.0	43	80	10	208	30	28	18	22	1.98
48455588--48455624	16	2.4	16	90	4	58	45	13	0	40	1.43
48458161--48458340	48	3.8	48	82	2	236	20	18	28	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410