genome.fa.s13.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  153  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46527643--46527802	43	3.7	42	75	11	128	30	23	20	26	1.98
46533055--46533130	38	2.0	38	94	0	134	47	14	11	26	1.79
46543153--46543290	40	3.5	40	84	4	147	23	29	23	23	1.99
46548341--46548470	40	3.2	40	79	2	145	23	27	23	24	2.00
46553872--46554025	49	3.1	49	79	4	166	46	12	11	29	1.77
46560013--46560196	29	6.5	28	75	12	153	32	28	16	22	1.96
46560013--46560224	57	3.8	57	88	2	302	31	28	17	22	1.97
46560234--46560512	40	7.0	40	92	1	454	26	27	21	23	1.99
46564915--46564962	18	2.8	17	81	12	53	22	2	0	75	0.91
46571100--46571164	30	2.2	29	84	13	80	10	16	1	70	1.23
46571210--46571274	34	1.9	34	84	3	87	13	24	0	61	1.32
46571200--46571250	21	2.4	22	75	12	54	9	21	0	68	1.18
46573225--46573263	21	1.9	21	89	5	62	35	12	0	51	1.40
46573223--46573275	20	2.7	19	77	11	61	33	16	0	49	1.47
46575584--46575644	32	1.9	32	93	0	104	39	6	22	31	1.80
46578257--46578335	33	2.4	33	85	4	97	21	12	43	22	1.86
46583288--46583515	40	5.7	40	90	3	352	25	22	26	25	2.00
46585140--46585318	42	4.2	42	82	2	189	29	16	25	28	1.97
46585456--46585481	12	2.2	12	100	0	52	46	23	7	23	1.78
46593897--46594018	43	2.9	43	85	1	147	29	31	18	20	1.97
46599215--46599248	11	3.0	11	83	8	50	76	2	2	17	1.04
46606277--46606422	37	3.9	37	96	0	247	26	30	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46606563--46607238	48	14.0	48	95	0	1154	30	28	5	34	1.81
46610576--46610726	40	3.8	40	77	13	141	25	24	27	22	2.00
46610613--46610742	40	3.2	40	80	2	154	23	23	27	24	2.00
46618559--46618709	40	3.8	40	79	6	155	26	23	27	22	2.00
46618596--46618725	40	3.2	40	80	2	154	23	23	27	24	2.00
46620700--46621225	27	19.8	27	78	12	455	27	20	10	40	1.86
46620692--46621220	53	10.0	53	79	9	494	27	20	10	40	1.86
46620700--46621225	133	4.0	130	77	12	448	27	20	10	40	1.86
46621230--46621420	27	7.2	27	80	6	196	35	17	20	26	1.95
46621230--46621431	55	3.8	53	83	6	232	35	18	20	25	1.95
46621238--46621435	82	2.5	80	85	5	242	34	18	20	26	1.96
46621643--46621703	26	2.4	25	86	10	79	18	21	26	34	1.96
46621662--46621723	26	2.4	25	84	7	79	19	19	20	40	1.92
46621845--46621946	6	16.8	6	76	13	102	19	16	13	50	1.78
46621845--46621946	30	3.4	30	90	1	159	19	16	13	50	1.78
46623901--46624377	27	17.7	27	82	5	500	27	21	9	41	1.85
46624382--46624576	27	7.3	27	84	1	230	34	18	20	26	1.96
46624382--46624574	80	2.4	81	85	0	253	34	17	20	26	1.95
46624775--46624861	27	3.3	26	88	4	120	17	22	24	35	1.95
46624979--46625086	6	17.8	6	72	16	80	20	16	13	49	1.80
46625010--46625107	12	8.2	12	72	13	76	20	15	13	51	1.76
46624979--46625086	30	3.6	30	81	6	128	20	16	13	49	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46627552--46627701	40	3.8	40	80	5	155	26	24	27	22	1.99
46630169--46630319	40	3.8	39	82	2	142	23	27	22	25	2.00
46630169--46630319	80	1.9	79	83	6	198	23	27	22	25	2.00
46634752--46634928	40	4.4	40	85	4	234	23	22	27	25	2.00
46644034--46644200	40	4.2	39	80	5	142	25	26	21	26	1.99
46646336--46646443	26	4.2	26	96	0	198	36	25	6	31	1.82
46648121--46648250	39	3.2	40	84	3	120	23	22	26	26	2.00
46648164--46648250	39	2.2	39	97	0	165	21	24	27	26	1.99
46655763--46655861	39	2.5	40	85	5	112	21	18	29	31	1.97
46655792--46655878	39	2.2	39	93	0	147	19	20	28	31	1.97
46658295--46658331	18	2.1	18	100	0	74	51	0	10	37	1.37
46666042--46666100	26	2.2	26	87	3	82	45	20	22	11	1.83
46666055--46666104	26	1.9	26	95	0	91	44	20	22	14	1.86
46669061--46669420	45	7.6	45	79	10	317	26	19	29	24	1.98
46669052--46669376	95	3.4	94	79	10	383	27	18	29	24	1.98
46670783--46670890	54	2.0	54	96	0	198	29	9	20	40	1.83
46671561--46671634	34	2.2	34	87	0	103	21	28	24	25	1.99
46673922--46674081	39	4.1	39	89	0	239	24	29	23	23	1.99
46681359--46681507	80	1.9	80	81	2	183	22	30	24	22	1.99
46681400--46681507	40	2.7	38	85	8	128	21	29	25	23	1.99
46688740--46689238	248	2.0	250	90	1	779	29	23	15	31	1.95
46690921--46690947	14	1.9	14	100	0	54	29	14	11	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46694246--46694284	21	1.9	20	89	5	60	46	20	0	33	1.51
46695241--46695288	22	2.2	22	96	0	87	41	16	8	33	1.78
46695249--46695286	12	3.3	12	78	14	53	42	15	7	34	1.76
46696955--46697122	40	4.2	40	79	4	160	24	27	23	25	2.00
46700058--46700235	56	3.1	58	83	6	177	46	7	18	27	1.77
46711461--46711631	93	1.8	93	94	0	306	28	29	20	21	1.98
46711453--46711628	46	3.8	46	78	10	196	29	29	19	21	1.98
46713673--46713728	20	2.6	22	72	13	53	30	8	7	53	1.59
46722240--46722273	16	2.1	17	88	5	52	38	5	17	38	1.74
46723161--46723199	20	2.0	20	89	0	60	43	20	2	33	1.65
46723349--46723449	23	4.2	23	77	6	85	36	19	21	21	1.95
46728075--46728156	40	2.0	40	92	0	137	54	19	3	21	1.59
46728646--46728696	14	3.6	14	81	7	50	25	7	1	64	1.31
46729051--46729106	27	2.1	27	100	0	112	60	21	14	3	1.49
46729101--46729148	23	2.1	23	100	0	96	35	12	14	37	1.84
46733444--46733528	43	2.0	43	81	4	100	31	12	16	38	1.87
46733982--46734013	15	2.2	14	94	5	55	6	15	9	68	1.36
46735505--46735547	13	3.5	13	75	18	56	48	13	0	37	1.43
46735505--46735556	23	2.3	23	100	0	104	48	13	0	38	1.43
46735505--46735562	23	2.6	23	91	2	73	50	12	0	37	1.40
46743425--46743463	10	3.6	10	81	18	51	48	10	0	41	1.37
46743412--46743463	23	2.3	23	93	6	88	48	11	0	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46754943--46754996	27	2.0	27	100	0	108	40	33	0	25	1.56
46755938--46755981	4	11.0	4	90	0	70	47	2	0	50	1.13
46755938--46755981	6	7.3	6	94	0	70	47	2	0	50	1.13
46758279--46758602	50	6.7	50	78	10	316	27	19	29	24	1.98
46758281--46758600	95	3.3	95	77	10	296	27	19	29	24	1.98
46762896--46762971	27	2.9	26	74	12	75	44	10	13	31	1.77
46772342--46772547	46	4.5	46	92	0	313	40	14	23	21	1.90
46772292--46772547	138	1.9	130	85	6	350	40	15	23	21	1.91
46777463--46777797	39	8.5	39	91	1	519	29	28	22	19	1.98
46778142--46778361	110	2.0	110	98	0	422	23	20	8	47	1.77
46782918--46783119	71	2.8	72	78	3	221	24	17	22	35	1.96
46786704--46787667	482	2.0	482	91	0	1559	26	22	17	32	1.96
46790503--46790586	41	2.0	43	86	6	120	46	2	1	50	1.22
46790549--46790588	17	2.2	19	86	8	57	42	2	0	55	1.13
46790494--46790592	40	2.5	39	76	14	103	44	2	2	51	1.24
46792834--46792858	1	25.0	1	100	0	50	0	0	0	100	0.00
46795025--46795049	12	2.1	12	100	0	50	0	8	0	92	0.40
46795588--46795619	15	2.1	16	94	5	57	43	0	0	56	0.99
46805611--46805760	40	3.8	40	77	12	132	26	24	26	22	2.00
46805650--46805776	40	3.2	40	77	4	132	24	24	28	22	2.00
46808484--46808530	23	2.0	23	100	0	94	25	12	14	46	1.80
46809437--46809474	18	2.1	18	85	9	51	39	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46811307--46811482	46	3.8	46	75	14	191	22	19	27	30	1.98
46811304--46811474	93	1.8	93	92	2	290	22	20	28	29	1.98
46816165--46816214	26	1.9	26	91	0	82	32	16	12	40	1.84
46820945--46821093	80	1.9	80	81	2	183	22	30	24	22	1.99
46820986--46821093	40	2.7	38	85	8	128	21	29	25	23	1.99
46829606--46829706	28	3.5	30	82	6	118	29	14	26	28	1.95
46829635--46829710	29	2.7	28	76	13	75	30	14	26	28	1.95
46832126--46832274	80	1.9	80	81	2	183	22	30	24	22	1.99
46832167--46832274	40	2.7	38	85	8	128	21	29	25	23	1.99
46840201--46840369	40	4.2	40	80	4	173	23	26	21	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410