genome.fa.s13.2.7.7.80.10.50.1000.367.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  367  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112480690--112480741	13	4.1	13	73	12	54	32	1	0	65	1.04
112481368--112481424	30	1.9	30	89	3	89	38	1	0	59	1.08
112482170--112482199	16	1.9	15	93	6	51	70	0	0	30	0.88
112482183--112482234	27	2.0	25	85	11	68	57	1	5	34	1.33
112483547--112483590	10	4.4	10	80	11	54	63	4	9	22	1.42
112483547--112483604	20	2.9	19	82	10	71	63	3	8	24	1.38
112499870--112500001	29	4.6	29	88	0	165	29	15	31	24	1.95
112508485--112508624	27	5.2	28	90	5	184	35	22	24	17	1.96
112510236--112510293	26	2.2	26	96	0	107	37	24	3	34	1.72
112514258--112514396	27	5.2	28	88	6	166	35	23	23	17	1.95
112514258--112514396	54	2.6	55	87	3	194	35	23	23	17	1.95
112516017--112516072	26	2.2	26	96	0	103	37	23	3	35	1.72
112517561--112517624	30	2.1	31	91	2	103	59	3	6	31	1.38
112536578--112536668	48	1.9	46	93	4	155	37	23	6	32	1.81
112540853--112540886	16	2.1	17	88	5	52	50	14	0	35	1.44
112541704--112541736	16	2.1	16	94	0	57	24	42	12	21	1.86
112542684--112542752	31	2.2	31	86	0	93	26	26	21	26	2.00
112542692--112542753	31	2.0	31	90	0	97	25	27	20	25	1.99
112542708--112542798	46	2.0	46	93	0	155	24	25	25	25	2.00
112542754--112542812	31	1.9	31	100	0	118	25	27	20	27	1.99
112542792--112542968	50	3.5	50	88	0	255	27	22	14	36	1.92
112545409--112545457	25	1.9	26	87	4	73	59	10	12	18	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112550114--112550191	33	2.4	33	81	12	97	33	16	23	26	1.96
112553364--112553401	5	7.4	5	88	11	51	18	0	0	81	0.69
112553367--112553410	11	4.0	11	85	8	63	18	0	2	79	0.83
112553367--112553410	17	2.7	16	86	13	63	18	0	2	79	0.83
112554970--112555014	21	2.1	22	87	4	65	51	11	15	22	1.75
112563459--112563516	20	2.8	20	82	15	73	39	5	8	46	1.57
112563668--112563723	20	2.8	19	77	20	60	48	10	3	37	1.56
112563861--112563973	20	5.7	20	73	4	84	43	7	12	37	1.70
112564094--112564159	20	3.2	21	79	12	66	36	6	16	40	1.73
112564109--112564200	20	4.6	21	77	9	93	34	7	11	45	1.70
112564109--112564200	40	2.3	40	84	0	121	34	7	11	45	1.70
112564271--112564314	20	2.2	20	88	4	63	34	9	9	47	1.67
112564378--112564450	20	3.6	21	76	12	73	41	8	5	45	1.57
112566594--112566634	18	2.3	18	86	0	55	41	17	9	31	1.82
112568430--112568457	12	2.3	12	100	0	56	7	14	32	46	1.71
112568463--112568550	39	2.2	40	87	2	124	38	23	19	18	1.93
112568463--112568632	40	4.3	40	80	6	150	32	25	19	22	1.97
112568665--112568770	40	2.7	41	81	11	123	27	19	19	33	1.96
112568978--112569023	22	2.1	22	83	0	56	21	0	32	45	1.52
112568983--112569031	15	3.4	14	83	10	55	18	0	36	44	1.50
112568990--112569034	14	3.1	15	87	9	58	20	0	40	40	1.52
112569015--112569083	36	1.9	36	82	5	86	18	1	39	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112569225--112569263	14	2.8	14	88	0	60	25	0	25	48	1.51
112569287--112569334	15	3.3	15	77	16	55	20	0	33	45	1.52
112569282--112569331	22	2.3	21	77	16	57	24	0	30	46	1.53
112569323--112569363	14	2.9	14	88	0	64	21	2	41	34	1.67
112569316--112569362	21	2.2	21	84	3	58	19	2	40	38	1.63
112569873--112569922	14	3.8	13	79	12	57	60	2	0	38	1.09
112570944--112570981	17	2.2	18	90	4	60	18	0	2	78	0.86
112570944--112570981	6	6.5	6	84	6	51	18	0	2	78	0.86
112571505--112571557	28	1.9	27	85	11	72	11	18	3	66	1.38
112572257--112572313	27	2.1	27	87	6	80	68	8	14	8	1.39
112573330--112573694	3	122.0	3	75	5	247	29	6	3	60	1.39
112573799--112573841	11	3.6	11	87	12	59	23	9	0	67	1.19
112573785--112573898	58	1.9	57	83	11	142	20	7	2	70	1.23
112581011--112581085	39	1.9	39	100	0	150	29	10	13	46	1.76
112585992--112587342	44	30.9	44	88	1	1901	23	31	15	29	1.95
112587561--112587679	61	1.9	65	89	6	192	38	11	15	33	1.84
112600071--112600409	44	7.6	44	80	1	381	31	19	23	25	1.98
112600067--112600409	89	3.9	89	87	1	420	31	19	23	25	1.98
112600071--112600409	133	2.5	134	85	0	421	31	19	23	25	1.98
112601004--112601053	24	2.1	23	85	10	66	72	10	10	8	1.30
112601004--112601053	23	2.2	22	85	7	64	72	10	10	8	1.30
112601816--112601875	3	19.3	3	79	6	50	41	1	0	56	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112601841--112601875	14	2.4	14	90	4	52	37	2	0	60	1.12
112602028--112602102	3	25.0	3	100	0	150	33	0	0	66	0.92
112602210--112602239	11	2.6	12	89	10	53	23	6	0	70	1.11
112607120--112607181	22	2.8	22	75	0	61	11	20	20	46	1.81
112621659--112621698	20	2.1	19	86	13	55	7	17	0	75	1.03
112621659--112621698	19	2.0	20	85	4	55	7	17	0	75	1.03
112622082--112622128	13	3.6	13	88	0	67	74	17	2	6	1.12
112622082--112622115	6	5.3	6	86	13	50	79	17	0	2	0.86
112625743--112625805	3	20.7	3	85	9	83	68	1	3	26	1.14
112625915--112626008	3	30.3	3	81	6	107	59	3	5	31	1.35
112627071--112627097	14	1.9	14	100	0	54	18	29	14	37	1.91
112627345--112627384	4	10.0	4	100	0	80	25	0	0	75	0.81
112638756--112638789	15	2.3	15	94	0	59	58	8	14	17	1.61
112641780--112641829	21	2.4	21	78	15	59	34	4	8	54	1.49
112647783--112647834	27	1.9	27	92	0	86	53	3	3	38	1.37
112650850--112650990	27	5.3	27	88	5	180	35	23	23	17	1.95
112651091--112651165	26	2.8	27	87	2	98	32	12	21	34	1.90
112651093--112651165	27	2.8	26	87	2	92	32	9	21	35	1.86
112652602--112652711	26	4.2	26	95	2	177	36	24	4	34	1.76
112655792--112655920	46	2.7	47	82	9	154	23	31	19	26	1.98
112658973--112659022	10	5.2	10	83	11	61	34	0	0	66	0.92
112658974--112659018	17	2.5	17	85	10	54	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112660490--112660591	51	2.0	51	100	0	204	37	7	19	35	1.81
112660716--112660785	34	2.1	34	100	0	140	37	8	8	45	1.65
112661507--112661538	5	6.4	5	100	0	64	37	0	0	62	0.95
112663312--112663384	35	2.1	36	84	2	94	27	0	9	63	1.26
112664287--112664312	10	2.6	10	100	0	52	88	0	11	0	0.52
112672087--112672308	39	5.6	39	88	2	293	22	31	20	24	1.98
112672087--112672308	117	1.9	119	87	1	331	22	31	20	24	1.98
112680022--112680256	39	6.1	39	88	3	262	24	32	19	24	1.97
112680026--112680256	78	3.0	78	85	4	290	23	32	19	24	1.97
112683901--112683942	20	2.2	19	86	4	57	30	7	2	59	1.37
112683936--112683997	21	3.0	20	81	6	61	35	4	0	59	1.19
112684101--112684170	22	3.1	23	82	13	83	27	5	4	62	1.36
112684121--112684163	23	1.9	23	85	4	61	25	4	2	67	1.22
112688092--112688121	14	2.1	14	93	0	51	43	6	3	46	1.46
112696196--112696982	210	3.7	210	95	0	1394	28	19	22	29	1.98
112705990--112706047	30	1.9	30	82	6	73	17	29	32	20	1.95
112707629--112707745	43	2.7	43	90	0	162	27	17	17	36	1.93
112709251--112709319	28	2.5	28	95	2	122	18	10	27	43	1.82
112710947--112710984	20	1.9	20	88	0	58	52	10	2	34	1.50
112715891--112715948	30	1.9	30	82	6	73	17	29	32	20	1.95
112717530--112717646	43	2.7	43	89	0	153	27	17	17	37	1.92
112719151--112719219	28	2.5	28	95	2	122	18	10	27	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112720846--112720883	20	1.9	20	88	0	58	52	10	2	34	1.50
112721244--112721286	23	1.9	23	85	4	61	37	2	20	39	1.66
112723665--112723706	20	2.1	20	100	0	84	28	9	4	57	1.51
112730959--112731016	10	5.8	10	82	8	64	25	6	1	65	1.27
112730963--112731016	20	2.7	19	80	8	72	25	7	1	64	1.30
112734628--112734718	15	6.5	14	69	25	68	21	2	2	73	1.05
112734642--112734716	5	14.4	5	76	18	73	20	2	2	74	1.06
112736340--112736377	13	2.8	14	84	15	53	44	0	10	44	1.38
112736391--112736442	10	5.1	10	83	2	59	23	5	1	69	1.20
112744278--112744401	9	13.7	9	69	21	73	62	4	1	32	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410