genome.fa.s13.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  137  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41488191--41488238	16	2.8	17	84	9	62	39	4	6	50	1.47
41488338--41488548	7	29.1	7	65	15	54	33	41	1	23	1.63
41488339--41488515	15	12.1	14	68	13	70	33	43	0	22	1.58
41488396--41488468	29	2.5	29	84	6	85	39	43	0	16	1.48
41488396--41488509	30	3.9	29	79	8	99	35	42	0	21	1.53
41488461--41488506	23	2.0	23	83	8	58	32	36	0	30	1.58
41488605--41488648	14	3.1	14	86	3	61	52	25	0	22	1.48
41488816--41488937	7	17.0	7	73	11	86	39	40	0	19	1.52
41488815--41488918	22	4.8	22	77	5	97	36	45	0	18	1.50
41488815--41488876	15	4.1	16	80	12	69	32	50	0	17	1.47
41488823--41488929	22	5.0	22	80	6	78	38	42	0	19	1.52
41488891--41488988	7	13.4	7	69	19	58	48	26	3	21	1.64
41489403--41489570	40	4.2	39	75	11	135	29	20	20	30	1.97
41490287--41490311	13	1.9	13	100	0	50	24	28	48	0	1.52
41498169--41498223	28	1.9	29	85	3	76	16	23	40	20	1.91
41499946--41500153	55	3.8	54	82	8	253	34	17	25	22	1.96
41499955--41500153	108	1.8	110	90	4	323	34	17	25	23	1.96
41503090--41503475	50	7.7	50	78	2	373	30	25	18	25	1.98
41503082--41503475	151	2.6	151	93	1	641	29	25	18	25	1.98
41503076--41503472	101	4.0	100	80	2	368	29	26	18	25	1.98
41503078--41503517	50	8.8	50	77	4	305	30	25	17	26	1.97
41512253--41512424	93	1.8	93	87	0	254	22	19	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41517248--41517321	29	2.6	29	89	4	105	25	16	32	25	1.96
41523390--41523458	28	2.5	28	95	2	122	43	27	10	18	1.82
41529731--41529768	20	1.9	20	88	0	58	34	2	10	52	1.50
41531391--41531464	28	2.7	28	89	4	107	44	27	8	20	1.79
41533653--41533802	40	3.8	39	74	17	130	26	24	27	21	1.99
41533696--41533802	39	2.7	38	84	12	128	23	26	29	20	1.99
41533696--41533879	79	2.3	79	79	2	181	22	25	30	22	1.99
41539238--41539311	29	2.6	29	89	4	105	25	16	32	25	1.96
41557328--41557364	17	2.2	17	86	13	51	45	18	2	32	1.64
41575000--41575175	46	3.8	46	75	8	160	21	18	27	32	1.97
41574996--41575168	93	1.9	93	87	2	258	21	18	28	31	1.97
41579657--41579924	49	5.6	48	71	14	196	26	19	31	22	1.98
41579657--41579976	98	3.3	95	76	9	269	27	18	30	22	1.98
41579650--41579924	142	1.9	142	83	7	353	26	18	31	23	1.98
41580114--41580168	25	2.3	23	85	11	76	40	7	18	34	1.78
41580124--41580171	25	1.9	25	100	0	96	37	6	16	39	1.74
41587523--41587772	93	2.6	95	80	8	267	26	19	28	24	1.99
41587473--41587788	49	6.6	48	73	13	242	27	19	29	24	1.98
41587469--41587742	142	1.9	141	87	5	401	26	19	29	24	1.98
41592649--41592682	17	2.0	17	94	0	59	2	5	5	85	0.83
41592651--41592689	17	2.3	17	86	0	51	5	7	5	82	0.96
41594842--41595030	40	4.8	40	85	3	229	25	22	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41594841--41595072	79	2.9	79	79	6	245	27	23	26	22	2.00
41594842--41595072	40	5.8	39	80	9	200	27	23	26	22	1.99
41602955--41603143	40	4.7	40	85	0	216	25	23	26	23	2.00
41602955--41603187	40	5.8	39	79	8	168	28	23	25	22	1.99
41602954--41603187	80	2.9	79	76	8	222	28	23	25	22	1.99
41606043--41606071	14	2.1	14	100	0	58	51	6	13	27	1.66
41606605--41606733	44	3.0	43	94	2	213	13	17	18	50	1.78
41614124--41614364	56	4.3	56	83	2	297	26	17	23	31	1.97
41622768--41622991	37	6.1	37	95	0	385	26	30	18	24	1.98
41624462--41624629	40	4.2	40	82	1	185	24	26	22	26	2.00
41626378--41626512	48	2.7	51	87	4	186	31	27	5	35	1.79
41626381--41626517	52	2.8	48	78	10	141	32	27	5	35	1.79
41626486--41626733	47	5.1	47	87	6	325	26	29	12	32	1.92
41626583--41626699	54	2.1	54	92	1	189	23	30	15	30	1.95
41626536--41626733	101	2.0	101	91	0	324	25	29	12	32	1.93
41626637--41626708	22	3.1	22	64	24	58	22	29	15	33	1.94
41626655--41626734	25	3.3	25	70	16	69	30	27	10	32	1.89
41630109--41630141	10	3.3	10	100	0	66	9	9	48	33	1.66
41630110--41630153	20	2.2	20	84	8	54	13	11	47	27	1.77
41632104--41632341	27	8.9	26	79	5	197	39	20	9	31	1.84
41632104--41632285	80	2.3	81	83	1	233	40	20	9	30	1.84
41632104--41632367	54	4.9	53	79	3	224	38	20	9	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41632104--41632313	80	2.6	79	79	5	224	39	20	9	30	1.84
41632157--41632421	80	3.3	80	77	9	198	36	20	10	31	1.88
41632103--41632425	27	12.0	27	73	11	184	37	20	10	31	1.87
41632388--41632439	27	1.9	27	84	0	68	34	19	19	26	1.95
41632780--41632841	22	2.8	23	87	7	92	20	22	19	37	1.95
41632981--41633043	22	2.9	22	78	7	65	17	23	17	41	1.90
41636964--41637170	27	7.8	27	80	2	240	40	20	8	30	1.83
41636964--41637170	53	3.9	53	85	2	265	40	20	8	30	1.83
41636965--41637198	53	4.4	53	81	3	247	40	20	8	29	1.83
41636964--41637229	27	10.0	26	75	8	205	39	20	10	30	1.85
41637771--41637831	22	2.8	22	89	0	86	16	24	19	39	1.92
41638886--41638931	24	2.0	24	91	4	76	36	26	23	13	1.91
41639938--41639999	28	2.2	28	91	2	108	35	24	11	29	1.90
41652414--41652518	40	2.6	40	87	3	149	24	22	28	23	1.99
41652457--41652564	39	2.7	39	86	2	135	26	24	28	20	1.99
41660404--41660570	40	4.2	40	74	7	151	24	21	28	25	1.99
41673105--41673251	43	3.4	43	90	5	235	29	29	17	23	1.97
41673257--41673302	20	2.3	20	81	11	58	39	0	2	58	1.10
41677371--41677454	41	2.1	41	86	6	118	26	25	13	35	1.92
41678296--41678342	21	2.2	21	88	0	67	46	31	4	17	1.67
41678738--41678770	7	4.7	7	89	10	50	39	45	3	12	1.57
41678790--41678888	28	3.8	27	73	18	84	45	24	2	28	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41678834--41678887	14	3.9	14	85	4	74	46	25	1	25	1.63
41679060--41679118	29	2.0	29	100	0	118	49	6	3	40	1.46
41679182--41679303	40	3.0	40	84	2	172	27	22	21	28	1.99
41679336--41679445	40	2.8	40	84	0	103	27	22	21	28	1.99
41679491--41679571	40	2.0	40	95	0	144	25	23	22	28	1.99
41687047--41687276	70	3.2	70	63	29	169	39	5	20	34	1.75
41687037--41687329	145	2.0	145	98	0	568	37	4	19	37	1.73
41690095--41690120	13	2.0	13	100	0	52	38	0	23	38	1.55
41694022--41694094	33	2.2	34	85	2	94	24	21	23	30	1.99
41700588--41700729	40	3.5	40	83	1	124	27	23	26	21	1.99
41700626--41700755	40	3.2	40	82	2	163	23	23	27	25	2.00
41708590--41708760	40	4.3	39	77	10	159	28	21	26	23	1.99
41714529--41714711	39	4.6	39	87	0	240	22	30	22	24	1.99
41721042--41721066	13	1.9	13	100	0	50	48	0	0	52	1.00
41722190--41722308	43	2.8	43	87	6	161	26	18	26	28	1.98
41727245--41727318	29	2.6	29	95	0	139	27	14	31	27	1.95
41727302--41727376	28	2.6	28	78	2	87	22	20	36	21	1.96
41727245--41727376	58	2.3	57	80	3	131	25	17	33	24	1.96
41735118--41735191	29	2.6	29	95	0	139	27	14	31	27	1.95
41735175--41735249	28	2.6	28	78	2	87	22	20	36	21	1.96
41735118--41735249	58	2.3	57	80	3	131	25	17	33	24	1.96
41736988--41737381	47	8.4	47	93	1	646	28	31	8	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41737038--41737163	25	5.3	25	63	18	70	29	30	7	32	1.84
41737251--41737373	22	5.3	22	63	24	65	27	30	9	31	1.89
41741103--41741177	18	4.2	18	77	8	73	9	21	2	66	1.32
41746909--41746958	23	2.2	23	92	0	82	38	30	14	18	1.89
41751526--41751652	42	3.0	42	78	6	132	29	25	13	31	1.94
41753756--41753799	13	3.5	13	81	6	63	47	15	18	18	1.83
41753755--41753792	18	2.1	18	85	9	51	44	15	18	21	1.86
41753933--41753985	24	2.2	24	96	0	97	35	16	24	22	1.95
41753944--41753992	24	2.0	24	92	0	80	34	18	22	24	1.96
41755168--41755418	27	9.3	28	85	6	322	29	22	8	39	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410