genome.fa.s13.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  135  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40801210--40801258	17	2.8	18	74	22	50	24	18	22	34	1.96
40802081--40802247	40	4.2	40	79	6	169	25	21	27	25	1.99
40815450--40815765	157	2.0	157	100	0	632	31	5	20	42	1.75
40818426--40818688	47	5.6	44	71	15	174	28	19	29	23	1.98
40818424--40818691	94	2.9	94	77	9	282	27	19	29	23	1.98
40832106--40832280	46	3.8	46	77	15	189	29	29	18	21	1.97
40832114--40832285	93	1.8	93	91	0	281	29	30	19	21	1.97
40835306--40835335	16	1.9	15	93	6	51	3	13	23	60	1.48
40841638--40841679	16	2.5	17	84	7	59	30	2	7	59	1.37
40842643--40842747	27	3.9	27	83	11	119	37	22	22	17	1.94
40849817--40849856	19	2.1	19	90	0	62	45	12	7	35	1.70
40854214--40854341	37	3.4	37	93	1	220	25	32	17	24	1.97
40854428--40854763	49	6.9	49	97	1	640	30	28	8	32	1.87
40858606--40858733	37	3.4	37	95	1	229	25	32	18	24	1.97
40858820--40859104	49	5.9	49	97	1	524	30	29	8	32	1.86
40858820--40859106	96	3.0	96	94	4	524	30	29	8	32	1.86
40869761--40870171	49	8.4	49	93	1	707	31	8	29	30	1.87
40874412--40874518	46	2.4	44	85	7	135	28	19	26	25	1.99
40877282--40877531	40	6.2	40	91	1	385	22	28	24	25	1.99
40882780--40882950	40	4.3	39	77	10	159	28	21	26	23	1.99
40890779--40890949	40	4.3	39	77	10	159	28	21	26	23	1.99
40893726--40894917	423	2.7	430	84	6	1507	39	18	9	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40909074--40909102	13	2.2	13	100	0	58	24	13	0	62	1.32
40912331--40912385	28	2.0	28	88	0	83	20	23	38	18	1.93
40914272--40914333	31	2.0	32	87	3	90	43	14	12	29	1.83
40914530--40914567	17	2.2	17	86	9	51	73	2	0	23	0.95
40915106--40915161	23	2.5	22	88	5	85	51	7	5	35	1.52
40915108--40915156	23	2.1	23	96	0	89	53	8	6	32	1.55
40915321--40915425	31	3.4	30	72	6	86	35	9	10	44	1.71
40915703--40915745	21	2.0	21	100	0	86	44	13	9	32	1.76
40918682--40918844	46	3.6	45	85	7	197	22	30	18	28	1.97
40919992--40920124	67	2.0	67	100	0	266	42	6	18	33	1.74
40923471--40923594	43	2.9	43	84	1	142	25	31	19	24	1.98
40927950--40928129	40	4.5	40	88	5	224	26	25	21	27	1.99
40936069--40936248	40	4.5	40	88	5	224	26	25	21	27	1.99
40944725--40944806	43	1.9	42	82	7	103	28	20	19	31	1.97
40957329--40957431	37	2.8	37	96	0	188	24	32	20	23	1.98
40961874--40962030	43	3.7	43	81	15	150	30	26	17	24	1.97
40961874--40962030	44	3.7	41	81	7	179	30	26	17	24	1.97
40963372--40963422	21	2.4	21	93	3	84	37	7	27	27	1.84
40964630--40964722	45	2.1	45	85	0	123	50	12	9	26	1.71
40973709--40973958	40	6.2	40	91	1	385	22	28	24	25	1.99
40981435--40981684	40	6.2	40	91	1	385	22	28	24	25	1.99
40986465--40986681	46	4.7	47	80	7	191	21	29	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40986465--40986686	94	2.4	92	83	8	265	21	29	20	28	1.98
40994429--40994678	40	6.2	40	90	1	385	25	24	28	22	1.99
41004755--41004923	40	4.2	40	80	4	173	23	26	21	28	1.99
41012693--41012861	40	4.2	40	80	4	173	23	26	21	28	1.99
41017323--41017444	48	2.5	48	97	0	226	36	5	26	31	1.80
41017567--41017708	37	3.8	37	91	1	223	26	17	29	26	1.98
41023384--41023428	20	2.2	21	84	7	58	8	20	4	66	1.36
41023378--41023430	19	2.8	18	78	13	61	11	18	3	66	1.38
41027193--41027346	42	3.7	41	78	8	148	28	25	14	31	1.95
41028583--41028740	41	3.8	42	83	5	198	19	18	26	34	1.95
41029739--41029768	14	2.1	14	93	0	51	40	0	10	50	1.36
41036232--41036302	27	2.6	27	80	4	81	38	26	5	29	1.79
41036286--41036409	27	4.6	27	85	2	169	41	20	7	30	1.79
41036270--41036409	54	2.6	53	85	6	138	40	21	7	30	1.80
41036286--41036438	81	1.9	81	86	2	218	40	20	9	30	1.83
41036392--41036453	27	2.3	27	88	0	88	40	17	16	25	1.90
41036309--41036436	54	2.4	54	84	2	150	42	20	9	28	1.83
41037068--41037126	28	2.1	28	100	0	118	45	25	11	16	1.82
41040353--41040423	27	2.6	27	75	4	72	36	26	7	29	1.83
41040407--41040530	27	4.6	27	85	2	169	41	20	7	30	1.79
41040391--41040530	54	2.6	53	85	6	138	40	21	7	30	1.80
41040513--41040574	27	2.3	27	94	0	106	41	16	14	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41040407--41040557	54	2.8	54	86	4	171	41	19	8	29	1.81
41040407--41040559	81	1.9	81	87	5	229	41	19	8	30	1.81
41041192--41041250	28	2.1	28	100	0	118	45	25	11	16	1.82
41043623--41043776	42	3.6	42	82	3	175	29	22	15	31	1.95
41050793--41050964	46	3.7	46	78	13	208	29	28	20	22	1.98
41055667--41055853	80	2.3	80	82	8	220	26	22	26	25	2.00
41055705--41055859	40	3.9	39	78	6	143	25	22	26	25	2.00
41063858--41063998	73	1.9	72	84	8	187	25	21	25	27	1.99
41063945--41064032	40	2.2	40	85	0	122	25	25	27	22	2.00
41071933--41072002	27	2.5	28	93	2	115	27	14	28	30	1.95
41071933--41072014	27	3.0	27	84	8	69	28	15	25	30	1.96
41073439--41073653	41	5.2	41	78	13	235	26	26	21	25	1.99
41073389--41073674	41	6.9	39	73	19	215	27	25	21	24	1.99
41073389--41073674	124	2.3	124	97	0	536	27	25	21	24	1.99
41078229--41078453	124	1.8	124	85	1	317	30	11	23	34	1.90
41078448--41078577	40	3.2	40	82	4	165	23	24	28	23	2.00
41078410--41078577	80	2.1	80	81	6	198	25	23	27	23	2.00
41082050--41082179	40	3.2	40	82	4	165	22	23	29	24	1.99
41088724--41088789	31	2.1	31	88	0	96	53	19	10	16	1.72
41089039--41089107	21	3.3	21	85	0	93	7	50	13	28	1.67
41089089--41089122	15	2.3	15	94	0	59	2	55	11	29	1.50
41094679--41094939	9	30.1	9	69	9	107	35	1	16	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41094768--41094927	33	5.0	33	70	10	134	34	1	14	49	1.54
41094734--41094939	94	2.2	94	93	0	349	34	1	16	47	1.55
41098166--41098234	35	2.0	35	100	0	138	28	26	18	26	1.98
41099207--41099449	83	3.0	82	84	4	339	29	23	12	34	1.92
41099386--41099584	62	3.0	62	69	19	177	26	23	13	36	1.92
41099310--41099584	135	2.0	138	87	5	394	28	21	13	36	1.91
41099940--41099971	7	4.6	7	96	0	55	46	34	0	18	1.49
41099903--41099971	14	4.9	14	71	8	59	43	36	0	20	1.52
41099911--41099965	28	1.9	29	82	10	69	41	36	0	21	1.54
41099975--41100059	14	5.7	14	71	13	53	34	38	2	24	1.68
41100006--41100059	21	2.5	21	78	3	63	37	40	0	22	1.54
41100125--41100179	14	3.9	14	82	0	65	43	30	0	25	1.55
41100189--41100239	25	2.1	25	92	3	86	43	13	0	43	1.44
41100789--41100875	40	2.2	40	79	4	95	25	17	17	40	1.90
41102734--41102909	35	5.1	35	84	3	221	36	21	11	29	1.89
41105347--41105555	67	3.2	66	75	12	189	22	29	17	31	1.96
41113202--41113228	12	2.2	12	100	0	54	25	7	7	59	1.51
41113430--41113491	28	2.2	28	85	0	79	25	16	22	35	1.94
41116770--41116816	19	2.3	20	82	10	60	36	0	14	48	1.44
41117165--41117711	50	10.9	50	74	4	409	26	16	24	31	1.96
41117327--41117706	101	3.8	98	75	5	323	27	16	24	31	1.96
41117165--41117708	151	3.6	151	89	1	829	26	16	24	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41117913--41117944	16	2.0	16	93	0	55	46	0	18	34	1.49
41123260--41123292	17	2.1	17	88	11	52	18	0	36	45	1.49
41128075--41128209	29	4.7	28	79	9	148	27	29	14	28	1.95
41128104--41128243	29	4.9	29	86	1	156	28	29	14	27	1.95
41128075--41128206	57	2.3	56	88	5	185	26	29	14	29	1.95
41128075--41128209	28	4.7	29	83	7	161	27	29	14	28	1.95
41128461--41128500	16	2.5	16	95	0	71	7	30	22	40	1.81
41139095--41139263	40	4.2	40	80	4	173	23	26	21	28	1.99
41144381--41144646	41	6.5	41	77	12	244	24	21	25	27	1.99
41144361--41144646	124	2.3	124	97	0	536	24	21	25	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410