genome.fa.s13.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  109  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32213933--32213980	25	1.9	25	86	0	69	33	25	16	25	1.96
32214024--32214063	20	2.0	20	100	0	80	35	10	20	35	1.86
32214113--32214255	24	6.0	24	93	4	218	29	22	21	26	1.99
32214113--32214255	47	3.0	47	91	5	216	29	22	21	26	1.99
32214113--32214256	71	2.0	72	90	4	229	29	22	21	26	1.99
32214447--32214510	31	2.1	31	90	0	101	35	15	25	23	1.94
32218478--32218572	34	2.4	42	68	27	107	46	4	22	27	1.70
32218498--32218568	34	2.1	34	97	0	133	42	5	22	29	1.76
32221700--32221754	27	2.1	27	93	3	94	18	10	12	58	1.63
32222436--32222534	27	3.7	27	82	6	112	34	21	14	30	1.93
32224901--32224970	30	2.3	30	80	4	79	27	17	20	35	1.94
32230198--32230251	20	2.7	20	97	0	99	11	29	38	20	1.87
32230530--32230745	112	1.9	112	94	0	378	43	27	6	22	1.76
32232509--32232566	17	3.4	17	68	13	55	32	17	8	41	1.80
32232508--32232574	35	1.9	35	100	0	134	35	19	7	37	1.80
32235037--32235139	29	3.6	28	81	5	116	21	16	33	29	1.95
32242909--32242957	17	2.8	18	74	22	50	24	18	22	34	1.96
32243774--32243940	40	4.2	40	78	6	160	25	22	27	24	2.00
32251517--32251619	29	3.6	28	81	5	116	21	16	33	29	1.95
32259259--32259361	29	3.6	28	81	5	116	21	16	33	29	1.95
32262834--32263038	53	3.8	54	80	7	209	22	23	18	36	1.95
32262848--32263033	55	3.5	53	80	8	198	21	23	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32263020--32263141	47	2.6	47	94	0	208	26	22	14	36	1.93
32263145--32263277	45	2.9	47	75	10	130	22	24	19	33	1.97
32263568--32263592	8	3.1	8	100	0	50	60	0	12	28	1.32
32266105--32266148	15	2.9	15	82	3	61	31	25	0	43	1.55
32266999--32267029	12	2.6	12	94	0	53	0	25	0	74	0.82
32267729--32267753	13	1.9	13	100	0	50	32	12	0	56	1.36
32271350--32271441	44	2.1	44	88	8	134	34	25	20	19	1.96
32271705--32271763	23	2.5	22	73	10	55	45	20	0	33	1.51
32272105--32272133	11	2.5	12	94	5	51	27	17	0	55	1.42
32272530--32272567	17	2.2	18	86	13	53	0	21	0	78	0.74
32272620--32272664	2	22.5	2	100	0	90	48	0	0	51	1.00
32272942--32272976	17	2.0	18	88	5	54	42	11	0	45	1.40
32275750--32275836	27	3.2	27	88	0	120	26	19	16	37	1.92
32287364--32287417	26	2.1	26	100	0	108	35	14	11	38	1.82
32288578--32288626	23	2.1	23	100	0	98	26	24	14	34	1.94
32290492--32290539	24	2.0	24	91	0	78	62	0	0	37	0.95
32292747--32292780	13	2.5	14	90	9	61	44	5	0	50	1.26
32299655--32299685	13	2.4	13	94	0	53	16	35	9	38	1.81
32304392--32304465	29	2.6	29	95	0	139	27	14	31	27	1.95
32304449--32304523	28	2.6	28	78	2	87	22	20	36	21	1.96
32304392--32304523	58	2.3	57	80	3	131	25	17	33	24	1.96
32312267--32312340	29	2.6	29	95	0	139	27	14	31	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32312324--32312399	29	2.6	29	78	0	89	22	19	35	22	1.96
32312267--32312399	58	2.3	58	80	2	133	24	17	33	24	1.96
32316473--32316528	17	3.4	17	76	16	55	23	16	17	42	1.88
32321632--32321657	2	13.0	2	100	0	52	50	50	0	0	1.00
32324070--32324250	40	4.5	40	80	7	188	24	25	23	26	2.00
32324070--32324248	80	2.2	81	85	1	243	24	25	23	26	2.00
32324098--32324250	40	3.8	40	86	0	198	25	26	22	26	2.00
32330398--32330444	10	4.6	10	82	12	60	53	27	0	19	1.45
32330401--32330441	22	1.9	21	95	5	73	53	29	0	17	1.44
32331154--32331282	43	3.0	43	79	6	154	31	25	18	24	1.97
32334662--32334842	40	4.6	40	92	3	296	23	23	27	25	2.00
32334662--32334842	79	2.3	80	91	4	296	23	23	27	25	2.00
32342746--32342927	40	4.6	40	90	2	278	23	23	27	26	2.00
32358032--32358074	22	2.0	22	90	4	70	37	0	2	60	1.10
32358405--32358434	2	15.0	2	100	0	60	50	0	0	50	1.00
32364499--32364571	36	2.0	36	100	0	146	26	24	19	30	1.98
32369692--32369943	126	2.0	126	96	0	468	40	9	18	31	1.82
32385238--32385275	20	1.9	19	89	5	58	34	13	0	52	1.40
32391526--32391560	17	2.0	18	88	5	54	51	5	14	28	1.65
32396652--32396740	40	2.2	40	95	0	160	24	21	28	25	1.99
32396650--32396780	40	3.3	40	86	2	156	24	21	27	26	1.99
32405548--32405866	48	6.7	47	71	11	200	22	26	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32405549--32405827	96	2.9	93	80	9	305	22	26	20	30	1.98
32405597--32405858	144	1.8	143	87	6	395	23	26	20	30	1.98
32407899--32408034	68	2.0	68	89	0	209	33	16	17	32	1.93
32411018--32411123	40	2.7	40	82	8	126	24	23	28	23	2.00
32411014--32411152	40	3.5	40	78	9	115	24	24	28	23	2.00
32412881--32412990	40	2.8	40	84	0	139	24	26	22	26	2.00
32422927--32422983	30	1.9	30	85	0	78	64	8	5	21	1.41
32424251--32424518	47	5.7	46	78	12	180	29	19	28	22	1.98
32424302--32424519	47	4.6	48	79	14	224	28	19	29	22	1.98
32439989--32440047	31	1.9	30	83	13	75	45	6	11	35	1.67
32443843--32443877	10	3.5	10	92	0	61	68	0	14	17	1.21
32473794--32473834	2	20.5	2	100	0	82	51	0	0	48	1.00
32473858--32474152	45	6.7	45	82	6	354	36	17	20	24	1.94
32473858--32474152	84	3.4	85	84	4	351	36	17	20	24	1.94
32473854--32474199	178	2.0	171	82	8	410	38	17	20	24	1.93
32474076--32474318	46	5.4	46	79	6	203	44	12	19	23	1.85
32474122--32474318	91	2.2	91	82	5	229	44	11	19	24	1.84
32478903--32478956	20	2.7	20	71	25	51	20	29	18	31	1.96
32482835--32482963	40	3.2	39	82	6	134	24	22	26	26	2.00
32491579--32491603	13	1.9	13	100	0	50	32	56	0	12	1.36
32491755--32491779	13	1.9	13	100	0	50	24	4	32	40	1.73
32493742--32493792	20	2.7	19	82	14	54	41	0	21	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32494444--32494618	49	3.7	46	83	5	172	25	21	30	22	1.99
32494482--32494646	49	3.4	49	83	2	199	27	19	29	23	1.98
32495501--32495533	15	2.1	16	88	5	50	24	30	33	12	1.91
32497712--32497820	48	2.3	48	98	0	209	39	22	20	17	1.92
32497851--32498044	54	3.6	53	76	5	183	36	18	23	22	1.95
32497851--32498061	53	3.9	53	77	4	181	36	17	23	22	1.94
32501268--32501389	40	3.1	40	90	3	185	22	21	27	27	1.99
32509150--32509272	40	3.1	39	85	3	158	24	19	26	29	1.98
32512726--32512795	25	2.8	25	82	0	68	28	18	22	30	1.98
32512840--32512878	10	3.8	10	90	6	60	30	15	17	35	1.91
32512840--32512879	21	1.9	21	94	0	71	30	15	17	37	1.90
32537591--32537760	93	1.8	93	83	5	227	28	18	27	25	1.98
32541298--32541348	27	1.9	26	84	4	66	23	15	15	45	1.85
32543691--32543841	40	3.8	39	80	6	153	27	23	27	22	1.99
32543728--32543857	40	3.3	39	80	4	161	24	23	27	24	2.00
32550006--32550045	21	2.0	20	85	5	53	42	20	0	37	1.52
32550922--32551061	50	2.8	50	92	0	217	37	21	14	27	1.92
32550923--32551054	25	5.3	25	72	3	113	36	22	14	26	1.93
32553517--32554190	336	2.0	335	96	0	1231	25	11	31	31	1.91
32554494--32554666	27	6.4	27	85	0	202	35	17	20	26	1.95
32555316--32555379	29	2.3	27	79	17	69	20	23	21	34	1.97
32555338--32555396	27	2.2	26	84	3	73	22	22	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32561059--32561257	27	7.4	27	86	1	265	34	17	22	26	1.96
32561059--32561257	54	3.7	54	89	1	301	34	17	22	26	1.96
32561059--32561249	80	2.4	81	90	1	294	33	17	23	26	1.96
32561059--32561257	107	1.9	107	89	0	308	34	17	22	26	1.96
32561909--32561960	27	2.0	26	84	3	68	17	26	21	34	1.95
32563604--32563928	180	1.8	179	87	0	488	32	18	9	40	1.82
32564256--32564286	15	2.1	15	93	0	53	35	19	0	45	1.51
32564498--32564880	101	3.8	100	77	4	331	29	25	18	26	1.98
32564489--32564883	151	2.6	151	88	0	576	29	25	18	26	1.98
32564498--32564883	50	7.7	50	79	4	382	29	25	17	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410