genome.fa.s13.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  166  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50668658--50668732	26	2.9	26	79	0	96	30	20	22	26	1.98
50672136--50672218	39	2.1	39	95	0	148	22	18	25	33	1.96
50672196--50672240	22	2.0	22	91	0	72	26	11	24	37	1.89
50672157--50672271	61	1.9	61	92	0	194	22	17	26	33	1.96
50672218--50672305	39	2.3	39	95	0	158	23	17	26	32	1.96
50680122--50680340	37	5.8	39	81	11	253	22	21	26	29	1.99
50680161--50680340	37	4.7	38	90	4	283	22	21	26	30	1.99
50680131--50680340	112	1.9	114	88	6	320	22	21	27	28	1.99
50684215--50684319	23	4.6	23	78	12	99	23	21	17	37	1.94
50686264--50686486	79	2.8	80	82	10	280	26	26	21	25	1.99
50686264--50686486	39	5.7	40	89	5	280	26	26	21	25	1.99
50694307--50694477	39	4.3	39	91	5	256	25	27	21	25	1.99
50694307--50694477	79	2.2	79	89	6	258	25	27	21	25	1.99
50694307--50694530	40	5.7	40	89	5	280	25	27	21	25	1.99
50699225--50699265	20	2.0	21	85	4	57	41	17	0	41	1.49
50709107--50709153	16	2.9	16	72	12	51	44	0	12	42	1.42
50709916--50710012	40	2.4	40	87	0	131	21	30	15	31	1.94
50717959--50718314	94	3.8	94	80	11	274	23	29	19	27	1.98
50717960--50718314	46	7.5	46	76	14	257	23	29	19	27	1.98
50718056--50718322	94	2.9	94	80	10	291	24	29	18	27	1.98
50717956--50718314	138	2.5	140	81	6	348	23	29	19	27	1.98
50724374--50724734	46	7.6	45	71	10	176	23	27	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50729897--50729936	21	2.0	20	85	5	53	40	22	2	35	1.68
50732246--50732342	48	2.0	48	88	4	142	38	3	4	54	1.35
50732312--50732424	61	1.9	58	82	12	142	41	2	4	51	1.36
50732531--50732578	26	2.0	25	84	15	66	39	2	14	43	1.57
50734946--50734981	8	4.4	8	96	3	63	13	0	22	63	1.29
50735387--50735487	42	2.4	43	81	1	114	27	18	22	30	1.98
50735375--50735504	43	3.0	43	73	7	122	25	16	25	33	1.96
50745103--50745169	16	4.1	16	76	16	66	58	2	1	37	1.23
50745306--50745362	17	3.4	17	78	4	71	36	7	3	52	1.46
50745996--50746034	14	2.8	14	80	0	51	35	10	20	33	1.86
50755574--50755664	28	3.2	28	84	3	121	34	24	13	28	1.93
50761523--50761748	40	5.7	40	89	4	280	25	22	26	25	2.00
50764154--50764219	28	2.4	28	80	12	82	13	19	22	43	1.86
50764221--50764300	33	2.4	33	85	0	97	21	21	11	46	1.82
50764296--50764332	18	2.1	18	89	0	56	32	27	5	35	1.79
50765074--50765160	43	2.0	43	100	0	174	39	20	11	28	1.88
50765090--50765161	20	3.5	20	66	17	56	43	18	9	29	1.81
50770186--50770317	29	4.6	29	88	0	165	29	15	31	24	1.95
50778005--50778136	29	4.6	29	88	0	165	29	15	31	24	1.95
50780683--50780726	21	2.0	22	87	12	65	27	13	13	45	1.81
50780933--50780972	6	6.3	6	83	11	53	50	12	5	32	1.62
50788590--50788760	93	1.8	93	94	0	306	28	29	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50788582--50788757	46	3.8	46	81	12	225	29	28	20	21	1.98
50789867--50790225	178	2.0	178	100	0	718	37	19	8	33	1.83
50790516--50790547	16	2.0	16	100	0	64	62	12	6	18	1.50
50795090--50795307	40	5.5	40	90	2	307	24	27	22	24	2.00
50798976--50799017	22	1.9	22	90	9	68	33	28	16	21	1.95
50799225--50799365	64	2.2	64	85	2	185	39	15	10	34	1.82
50806184--50806391	67	3.2	64	75	12	181	31	16	29	22	1.96
50810225--50810249	2	12.5	2	100	0	50	52	0	0	48	1.00
50810533--50810662	43	3.1	42	72	8	113	32	26	14	26	1.95
50810546--50810677	43	3.1	41	73	9	106	31	26	16	25	1.96
50817925--50818337	205	2.0	205	97	0	772	36	9	15	37	1.81
50820511--50820550	14	2.8	15	88	7	57	42	2	0	55	1.13
50825664--50825694	16	2.0	15	93	6	53	58	0	0	41	0.98
50834715--50834739	12	2.1	12	100	0	50	24	32	28	16	1.96
50837966--50838141	46	3.8	46	80	12	225	21	21	28	28	1.98
50837963--50838133	93	1.8	93	96	0	315	21	21	29	28	1.98
50840001--50840136	29	4.7	29	86	3	157	24	30	15	29	1.95
50839976--50840135	58	2.8	58	81	0	176	23	33	15	27	1.95
50840780--50841076	143	2.1	143	98	0	576	39	29	10	20	1.86
50847694--50847749	23	2.4	24	80	14	64	28	1	28	41	1.66
50863016--50863129	59	1.9	59	92	0	192	28	10	23	36	1.88
50863110--50863309	42	4.6	42	75	10	177	29	17	24	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50863098--50863267	90	1.9	91	81	3	209	27	15	25	31	1.96
50871806--50872053	128	1.9	128	88	1	372	29	19	15	35	1.92
50874939--50874995	29	2.0	29	100	0	114	12	21	7	59	1.56
50875798--50876218	48	8.8	48	91	0	662	34	5	27	31	1.81
50877665--50877771	29	3.7	29	81	5	117	22	30	16	29	1.96
50879159--50879196	19	2.0	19	100	0	76	42	15	10	31	1.81
50885207--50885341	29	4.7	29	86	3	155	23	31	15	29	1.95
50885153--50885342	58	3.3	58	77	4	179	24	33	16	26	1.96
50891487--50891726	40	6.1	39	86	5	290	25	21	27	25	1.99
50896962--50897317	48	7.6	48	89	3	539	34	6	26	32	1.81
50896962--50897317	142	2.5	141	94	2	601	34	6	26	32	1.81
50898766--50898900	29	4.7	29	86	3	155	23	31	15	29	1.95
50898712--50898901	58	3.3	58	77	4	179	24	33	16	26	1.96
50906869--50907002	29	4.7	29	85	5	155	23	31	15	29	1.96
50906815--50907003	58	3.3	58	77	5	179	24	33	16	25	1.96
50914608--50914757	79	1.9	80	86	6	216	28	26	18	26	1.98
50914561--50914764	40	5.1	40	85	4	227	26	26	21	25	1.99
50916577--50918976	48	50.0	48	93	0	3852	35	6	26	31	1.82
50920246--50920397	40	3.8	40	92	0	232	26	20	26	26	1.99
50923879--50924622	48	15.5	48	93	0	1182	35	6	26	32	1.81
50924592--50924648	26	2.2	26	90	0	87	36	1	19	42	1.62
50924544--50924696	74	2.1	74	93	0	261	35	4	24	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50924496--50924744	122	2.0	122	92	0	417	35	5	25	33	1.79
50924400--50924839	218	2.0	218	93	0	745	35	5	25	33	1.80
50924618--50924912	48	6.1	48	94	0	500	35	6	26	31	1.82
50924448--50924774	170	1.9	170	92	0	555	35	6	25	33	1.81
50924352--50924868	266	1.9	266	96	0	953	35	6	25	32	1.81
50931322--50931484	43	3.8	43	90	0	218	28	29	17	23	1.97
50931322--50931514	43	4.5	43	88	0	215	29	29	18	22	1.98
50931855--50931988	66	2.0	65	84	8	173	14	24	18	42	1.87
50940000--50940042	21	2.0	21	100	0	86	9	32	25	32	1.88
50942790--50942824	14	2.5	14	90	0	52	40	17	14	28	1.88
50943817--50943856	15	2.7	15	88	0	62	17	35	0	47	1.48
50952143--50952453	46	6.5	48	72	15	188	27	17	29	25	1.98
50967169--50967344	46	3.8	45	76	12	178	20	21	28	29	1.98
50967165--50967336	93	1.8	93	92	0	290	20	21	29	28	1.98
50969084--50969132	17	2.8	18	74	22	50	24	18	22	34	1.96
50969990--50970118	40	3.2	40	80	4	143	25	22	27	24	2.00
50976224--50976272	17	2.8	18	74	22	50	24	18	22	34	1.96
50977093--50977243	40	3.8	40	79	6	155	25	22	27	23	2.00
50979087--50979302	23	9.5	23	71	14	153	35	17	22	24	1.95
50979087--50979301	45	4.7	46	81	7	203	35	17	22	24	1.95
50979087--50979281	91	2.1	89	84	7	241	34	16	23	25	1.96
50979134--50979312	91	2.0	92	82	7	222	35	17	22	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50983571--50983650	42	1.9	42	84	5	108	23	12	28	35	1.91
50986280--50986369	27	3.3	27	82	0	126	31	18	11	38	1.86
50988528--50988678	40	3.8	40	78	6	155	27	23	27	21	1.99
50988565--50988694	40	3.2	40	79	2	154	23	23	28	23	2.00
50988528--50988694	80	2.1	79	82	7	205	26	23	27	22	2.00
50996537--50996687	40	3.8	40	79	6	155	26	23	27	22	2.00
50996574--50996703	40	3.2	40	81	2	163	23	23	28	24	2.00
51004544--51004694	40	3.8	40	77	11	141	26	24	27	21	2.00
51004581--51004710	40	3.2	40	79	2	154	23	23	28	23	2.00
51004543--51004710	80	2.1	80	82	6	207	26	23	27	22	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410