Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  364  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111826641--111826697
7
7.9
7
78
7
60
49
31
0
19
1.49
111826643--111826697
15
3.8
14
83
7
65
49
30
0
20
1.49
111826879--111826945
28
2.3
31
75
21
72
28
2
4
64
1.28
111827195--111827273
40
2.0
40
87
5
115
27
18
20
32
1.96
111829714--111829753
3
13.3
3
100
0
80
0
0
67
32
0.91
111833146--111833185
18
2.2
18
86
8
55
80
0
0
20
0.72
111833952--111834217
46
6.0
45
85
8
339
21
23
15
39
1.92
111834130--111834205
38
2.0
38
100
0
152
21
26
18
34
1.96
111836285--111836336
11
4.7
11
76
9
52
63
1
0
34
1.06
111838755--111838814
14
4.1
14
80
16
61
45
6
0
48
1.29
111841497--111841525
13
2.1
14
93
6
51
51
0
3
44
1.18
111842094--111842138
23
1.9
23
82
13
56
42
4
17
35
1.70
111842714--111842815
51
2.0
51
82
3
125
45
12
16
25
1.83
111843153--111843200
15
3.3
15
82
2
62
37
2
12
47
1.53
111843836--111843876
19
2.2
19
87
12
59
46
0
24
29
1.53
111852381--111852647
136
2.0
135
89
5
414
39
15
10
34
1.82
111854598--111854639
9
4.7
9
80
11
50
54
7
0
38
1.28
111854588--111854652
27
2.5
24
75
20
69
55
4
0
40
1.21
111854865--111854923
29
2.0
29
100
0
118
28
6
27
37
1.82
111857021--111857064
22
2.0
23
86
4
63
50
0
2
47
1.13
111865140--111865166
14
1.9
14
100
0
54
33
7
7
51
1.58
111865186--111865215
14
2.1
14
93
0
51
83
6
0
10
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111883576--111883681
37
2.8
38
73
9
99
32
21
16
29
1.96
111884607--111884677
10
6.7
10
78
13
72
1
15
5
77
1.02
111884602--111884677
23
3.3
23
74
13
77
1
15
5
77
1.01
111889204--111889237
2
17.0
2
93
0
59
50
2
0
47
1.16
111889529--111889762
10
24.9
9
67
21
67
56
6
1
35
1.35
111889735--111889769
10
3.7
10
88
11
56
62
0
0
37
0.95
111890176--111890259
29
2.8
30
80
5
80
32
1
5
60
1.28
111890840--111890870
8
3.8
8
91
8
53
12
0
0
87
0.55
111890841--111890870
9
3.4
9
95
4
53
10
0
0
90
0.47
111896356--111896409
24
2.2
24
100
0
108
38
3
22
35
1.72
111896635--111896689
28
2.0
28
82
7
67
58
7
7
27
1.52
111904499--111904832
172
1.9
172
90
0
533
50
12
16
19
1.77
111908395--111908434
11
3.6
11
79
0
53
20
12
10
57
1.63
111908471--111908533
30
2.1
30
91
5
101
25
4
11
58
1.51
111909779--111909823
23
1.9
23
86
13
65
46
0
0
53
1.00
111915179--111915264
41
2.1
40
82
2
100
22
3
10
63
1.40
111917792--111917822
2
15.5
2
100
0
62
51
0
0
48
1.00
111917614--111918032
228
1.8
228
96
1
786
43
6
10
39
1.64
111923496--111923864
138
2.6
138
87
1
495
42
14
21
21
1.88
111923496--111923816
46
7.0
46
91
0
462
42
14
21
22
1.89
111923510--111923864
92
3.8
92
89
2
478
42
14
21
20
1.88
111930102--111930133
15
2.3
15
89
10
50
40
18
0
40
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111930346--111930377
12
2.5
13
90
10
57
37
15
0
46
1.46
111930726--111930790
21
3.1
21
84
0
94
38
23
20
18
1.93
111931976--111932014
15
2.5
15
87
4
51
5
30
0
64
1.15
111932212--111932247
3
12.0
3
100
0
72
66
0
0
33
0.92
111932541--111932577
18
1.9
18
89
10
56
40
5
0
54
1.24
111932565--111932624
20
2.8
20
79
20
61
55
3
0
41
1.16
111932565--111932623
23
2.7
22
73
17
61
55
3
0
40
1.16
111933862--111933889
13
2.2
13
100
0
56
35
0
14
50
1.43
111934375--111934412
7
5.4
7
100
0
76
15
28
13
42
1.85
111935050--111935114
23
2.8
24
80
13
73
64
0
0
35
0.94
111935068--111935121
25
2.2
25
83
6
65
66
1
0
31
1.02
111935101--111935131
16
1.9
16
93
0
53
61
3
0
35
1.12
111944223--111944250
6
4.7
6
100
0
56
14
14
0
71
1.15
111946395--111946420
2
13.0
2
100
0
52
50
0
0
50
1.00
111953529--111953582
23
2.5
23
82
8
60
61
7
0
31
1.24
111953760--111953874
21
5.2
24
74
20
92
62
0
7
29
1.23
111953794--111953869
15
5.1
15
76
19
63
67
0
5
27
1.12
111953757--111953875
44
2.7
45
79
15
124
63
0
7
29
1.22
111953788--111953867
23
3.8
20
79
12
65
66
0
6
27
1.16
111959167--111959206
16
2.5
17
76
23
50
67
0
2
30
1.04
111962469--111962686
46
4.7
46
90
1
312
22
23
13
40
1.90
111966417--111966629
80
2.6
79
85
5
266
38
21
20
19
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111966422--111966623
41
5.0
41
80
2
210
37
21
20
20
1.94
111969312--111969342
15
2.1
15
100
0
62
41
12
25
19
1.87
111974469--111974506
20
1.9
20
84
10
51
42
13
23
21
1.88
111976405--111976632
46
5.0
46
91
1
332
38
14
24
22
1.92
111979021--111979077
23
2.4
24
79
8
71
59
0
0
40
0.97
111984617--111984658
22
2.0
20
90
9
66
66
0
0
33
0.92
111984625--111984665
16
2.5
17
76
11
50
68
0
0
31
0.90
111984824--111985169
140
2.5
140
83
5
366
52
10
11
25
1.69
111986801--111986865
29
2.2
30
78
13
73
41
10
0
47
1.38
111986875--111986931
30
1.9
30
85
0
78
36
14
5
43
1.67
111987088--111987112
13
1.9
13
100
0
50
72
0
0
28
0.86
111988530--111988576
21
2.3
20
88
3
67
51
0
4
44
1.21
111994279--111994324
18
2.5
17
83
13
56
34
0
0
65
0.93
111999407--111999445
3
13.7
3
84
10
55
69
0
30
0
0.89
112001016--112001049
16
2.1
16
88
0
50
23
2
0
73
0.97
112004700--112004731
2
16.0
2
100
0
64
0
0
50
50
1.00
112004887--112004942
15
3.9
15
83
4
71
35
0
12
51
1.40
112004883--112004940
29
2.0
28
90
9
91
32
0
12
55
1.37
112005227--112005313
21
4.0
23
80
10
92
14
21
25
37
1.92
112005474--112005514
19
2.2
19
87
12
59
46
0
24
29
1.53
112009161--112009198
18
2.2
18
86
9
53
36
5
2
55
1.37
112016857--112016890
11
3.1
11
87
12
52
70
0
0
29
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112021892--112021921
14
2.1
15
93
6
53
90
0
10
0
0.47
112031282--112031320
18
2.1
19
90
4
62
69
0
30
0
0.89
112031352--112031376
6
4.2
6
100
0
50
84
0
16
0
0.63
112031347--112031390
20
2.3
19
80
4
52
72
0
27
0
0.85
112031835--112031880
17
2.8
16
87
6
65
71
2
10
15
1.23
112031814--112031880
16
4.2
16
75
11
66
67
1
10
20
1.29
112031900--112032521
138
4.5
138
89
3
921
57
6
7
28
1.52
112031900--112032521
278
2.2
276
90
2
982
57
6
7
28
1.52
112034562--112034706
72
2.0
72
85
2
193
22
24
17
35
1.95
112035213--112035359
63
2.3
63
96
0
276
47
10
4
37
1.58
112038412--112038444
16
2.1
16
88
11
50
0
24
0
75
0.80
112041047--112041075
14
2.0
15
93
6
51
48
10
0
41
1.37
112042829--112042984
78
2.0
78
92
0
258
41
14
10
33
1.80
112048367--112048403
7
5.3
7
100
0
74
27
0
29
43
1.55
112051293--112051340
19
2.3
21
75
20
55
33
6
12
47
1.66
112051302--112051342
19
2.2
19
95
0
73
26
7
14
51
1.69
112054904--112054994
42
2.1
42
97
2
155
31
18
8
40
1.81
112056529--112056569
6
6.8
6
97
0
73
53
34
12
0
1.38
112056766--112056805
21
1.9
21
90
10
64
42
40
10
7
1.67
112062825--112062860
3
12.0
3
100
0
72
33
0
0
66
0.92
112073470--112073518
25
2.0
25
100
0
98
36
10
20
32
1.86
112077446--112077557
58
1.9
59
94
1
199
50
18
11
18
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112081954--112082008
16
3.4
16
73
9
58
14
27
0
58
1.37
112086182--112086234
26
2.0
26
100
0
106
28
30
3
37
1.75
112088965--112088994
4
7.5
4
100
0
60
26
0
0
73
0.84
112091869--112091912
22
1.9
24
90
9
74
25
20
0
54
1.45
112095964--112096085
60
2.0
60
98
0
235
42
3
9
45
1.52
112098729--112098787
30
1.9
32
86
6
86
37
8
6
47
1.61
112100354--112100393
21
1.9
21
94
0
71
25
20
25
30
1.99
112102293--112102331
3
13.0
3
94
0
51
0
33
7
58
1.26
112102467--112102535
31
2.3
31
80
7
79
23
10
18
47
1.79
112103300--112103337
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410