genome.fa.s13.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  154  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46856170--46856354	40	4.7	40	78	4	176	27	22	26	23	2.00
46856170--46856354	80	2.3	79	82	4	203	27	22	26	23	2.00
46856217--46856360	40	3.6	40	84	3	182	27	22	27	22	1.99
46856207--46856390	40	4.7	38	80	7	147	26	22	27	24	2.00
46856208--46856390	80	2.3	80	80	4	201	26	22	27	24	2.00
46864357--46864507	40	3.8	40	83	5	180	27	21	27	23	1.99
46864354--46864537	40	4.7	38	80	8	147	26	21	27	24	1.99
46869939--46870030	43	2.1	43	84	4	114	20	30	26	22	1.98
46871474--46871606	48	2.8	48	76	8	119	28	18	29	24	1.98
46874235--46874498	47	5.6	48	77	8	235	22	29	18	28	1.98
46874235--46874489	140	1.8	140	84	5	354	22	29	19	29	1.98
46881639--46881665	13	2.1	13	100	0	54	11	29	22	37	1.89
46884444--46884550	31	3.5	31	77	7	139	46	0	8	44	1.33
46884446--46884575	59	2.2	59	95	1	235	50	0	6	43	1.27
46886198--46886384	40	4.6	40	91	1	275	21	15	26	36	1.93
46888861--46888991	40	3.3	39	79	2	145	24	27	22	25	2.00
46893633--46893763	40	3.3	39	79	2	145	24	27	22	25	2.00
46908396--46908579	40	4.6	39	75	6	138	26	23	27	22	2.00
46908436--46908624	80	2.4	81	77	4	186	23	24	29	22	1.99
46913809--46913865	28	2.0	28	100	0	114	38	14	14	33	1.85
46916276--46916314	21	1.9	21	89	5	62	25	2	23	48	1.63
46918112--46918140	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46920140--46920200	30	2.0	30	83	0	77	31	22	8	37	1.84
46924108--46924340	40	5.8	40	86	7	208	26	19	24	28	1.99
46924117--46924340	80	2.8	80	83	5	265	26	20	25	28	1.99
46924204--46924344	40	3.5	40	92	1	212	23	19	28	29	1.98
46924242--46924368	40	3.2	40	87	0	128	23	22	26	27	1.99
46929924--46930095	93	1.8	93	96	0	317	27	30	22	20	1.98
46929916--46930091	46	3.8	46	81	10	232	28	29	21	20	1.98
46935092--46935284	40	4.8	40	89	3	230	26	20	24	28	1.99
46938761--46938903	50	2.8	51	90	3	227	27	18	25	28	1.98
46939495--46939534	21	1.9	21	89	0	62	52	5	7	35	1.51
46939943--46939978	18	2.0	18	88	0	54	11	19	27	41	1.85
46949208--46949306	24	4.1	24	89	0	144	44	25	17	13	1.84
46951861--46951958	20	4.9	20	67	14	67	14	28	19	37	1.91
46951838--46951958	40	3.0	40	88	0	188	15	28	18	38	1.91
46953042--46953084	22	1.9	23	90	4	70	25	53	0	20	1.46
46957369--46957423	22	2.5	22	84	0	65	38	20	29	12	1.89
46962529--46962572	15	2.9	15	80	6	52	43	2	13	40	1.57
46962890--46962922	5	6.8	5	96	3	59	63	0	0	36	0.95
46963285--46963337	25	2.1	25	86	6	72	35	1	5	56	1.34
46966814--46966934	46	2.6	46	84	5	154	23	29	18	28	1.98
46968185--46968309	46	2.7	46	92	0	205	33	20	25	20	1.97
46968374--46968482	49	2.2	49	80	6	114	30	18	26	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46975481--46975523	19	2.2	20	83	4	52	34	2	20	41	1.65
46975975--46976143	48	3.6	47	76	6	162	30	18	25	25	1.98
46977609--46977972	94	3.9	94	76	9	348	21	29	21	27	1.99
46977605--46977971	47	7.8	48	73	14	194	21	29	21	26	1.98
46984193--46984311	55	2.2	56	86	3	161	26	28	22	22	1.99
46985075--46985345	47	5.8	47	77	12	191	25	27	20	26	1.99
46985127--46985342	47	4.7	46	81	8	217	25	27	19	26	1.99
46985077--46985392	94	3.4	92	79	6	316	23	28	20	27	1.99
46988770--46988834	29	2.4	26	76	14	76	26	6	0	67	1.13
46991783--46991899	55	2.1	55	82	3	137	25	32	26	15	1.95
46993841--46993982	40	3.5	40	83	1	124	27	23	26	22	1.99
46993880--46994008	40	3.2	39	84	6	152	24	22	27	25	2.00
47003772--47003815	18	2.5	17	78	10	52	31	0	4	63	1.14
47005220--47005432	46	4.6	46	75	10	141	24	28	18	28	1.98
47014911--47014955	23	2.0	23	82	8	56	40	13	8	37	1.76
47019678--47019786	54	2.0	54	100	0	218	31	16	18	33	1.93
47026107--47026168	20	3.0	20	78	21	74	77	0	3	19	0.90
47026111--47026165	26	2.1	26	83	12	69	78	0	3	18	0.90
47026107--47026164	5	11.6	5	77	12	57	77	0	3	18	0.91
47026846--47026889	20	2.2	20	88	8	63	15	45	22	15	1.85
47032244--47032405	81	2.0	81	95	0	288	29	9	19	42	1.82
47039587--47039644	30	1.9	30	82	6	73	15	24	37	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47040991--47041032	22	1.9	22	90	0	66	19	28	14	38	1.90
47045521--47045558	20	1.9	20	88	0	58	52	10	2	34	1.50
47053448--47053485	20	1.9	20	88	0	58	52	10	2	34	1.50
47054295--47054519	70	3.2	70	75	5	204	26	18	20	34	1.96
47066943--47067140	40	4.9	40	89	4	278	28	21	24	25	1.99
47066950--47067168	40	5.5	40	87	5	193	28	20	24	26	1.99
47078858--47079055	71	2.8	70	92	3	294	33	17	28	20	1.95
47078924--47079041	41	3.1	41	60	28	98	32	17	28	21	1.96
47078892--47079055	71	2.3	71	100	0	328	35	17	28	18	1.94
47086427--47086624	71	2.8	70	92	3	294	33	17	28	20	1.95
47086493--47086610	41	3.1	41	60	28	98	32	17	28	21	1.96
47086461--47086624	71	2.3	71	100	0	328	35	17	28	18	1.94
47093024--47093241	84	2.6	83	90	1	337	24	27	18	28	1.98
47093047--47093180	41	3.2	41	63	12	101	24	29	20	25	1.99
47093064--47093194	41	3.1	41	64	12	104	25	25	21	26	1.99
47095128--47095157	15	2.1	15	93	6	53	36	26	6	30	1.82
47099541--47099711	93	1.8	93	92	0	288	29	28	20	21	1.98
47099536--47099708	46	3.7	46	76	10	181	30	27	20	21	1.98
47105265--47105430	48	3.5	47	78	6	192	22	26	19	31	1.98
47105117--47105479	49	7.7	47	73	12	210	24	25	20	29	1.99
47105265--47105479	94	2.3	93	83	4	272	22	26	20	30	1.98
47109364--47109587	93	2.4	90	79	7	245	24	30	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47109316--47109584	137	1.9	136	79	14	291	23	29	20	27	1.98
47110242--47110267	12	2.2	12	100	0	52	57	15	11	15	1.65
47115423--47115482	30	2.0	30	83	0	75	30	23	8	38	1.84
47118144--47118205	27	2.2	29	80	13	76	25	17	17	38	1.92
47121002--47121220	79	2.8	78	82	0	267	31	20	14	33	1.92
47122965--47123042	28	2.8	28	77	14	81	53	2	0	43	1.14
47129108--47129195	46	1.9	46	92	0	149	27	20	28	23	1.99
47134615--47134688	29	2.6	29	95	0	139	27	14	31	27	1.95
47134672--47134747	29	2.6	29	78	0	89	22	19	35	22	1.96
47134615--47134747	58	2.3	58	80	2	133	24	17	33	24	1.96
47142497--47142570	29	2.6	29	95	0	139	27	14	31	27	1.95
47142554--47142629	29	2.6	29	78	0	89	22	19	35	22	1.96
47142497--47142629	58	2.3	58	80	2	133	24	17	33	24	1.96
47150377--47150450	29	2.6	29	95	0	139	27	14	31	27	1.95
47150434--47150509	29	2.6	29	78	0	89	22	19	35	22	1.96
47150377--47150509	58	2.3	58	80	2	133	24	17	33	24	1.96
47154613--47154784	93	1.8	93	96	0	317	27	30	22	20	1.98
47154605--47154780	46	3.8	46	81	10	232	28	29	21	20	1.98
47158452--47158600	80	1.9	80	81	2	183	22	30	24	22	1.99
47158493--47158600	40	2.7	38	85	8	128	21	29	25	23	1.99
47165671--47165706	16	2.2	16	95	0	63	47	19	25	8	1.77
47165918--47166090	29	6.0	28	84	6	179	26	13	31	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47170224--47170277	16	3.4	16	76	0	54	48	16	20	14	1.81
47170516--47170634	29	4.1	29	80	1	114	27	13	29	29	1.94
47174915--47175099	40	4.7	40	76	7	164	25	24	25	23	2.00
47174915--47175099	79	2.3	81	81	7	200	25	24	25	23	2.00
47177684--47177713	16	1.9	16	93	6	53	33	23	0	43	1.54
47177913--47178205	50	5.8	50	76	5	241	30	24	16	27	1.97
47183769--47183867	28	3.5	28	81	9	112	29	25	16	29	1.96
47185519--47185648	40	3.2	40	83	4	165	23	29	25	22	1.99
47191255--47191325	35	2.0	35	97	0	133	35	12	5	46	1.66
47191457--47191486	16	1.9	15	93	6	51	33	23	0	43	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410