genome.fa.s13.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  163  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49821634--49821831	27	7.3	27	89	3	265	27	26	8	37	1.85
49821634--49821831	81	2.4	81	91	3	310	27	26	8	37	1.85
49821863--49821986	27	4.6	27	79	6	126	41	21	8	28	1.81
49821821--49821962	54	2.7	53	76	10	137	36	21	12	29	1.90
49821863--49822043	54	3.3	55	79	6	154	42	19	7	30	1.79
49821942--49822049	27	3.9	27	78	9	110	44	17	6	31	1.74
49821863--49822069	110	1.9	108	80	2	243	41	19	8	30	1.82
49822080--49822167	27	3.3	26	75	9	79	42	20	17	20	1.90
49822955--49823024	25	2.8	25	93	0	113	27	25	22	24	2.00
49822954--49823049	25	3.9	24	81	9	95	28	23	22	25	2.00
49822955--49823049	50	1.9	50	80	8	113	28	24	23	24	2.00
49823244--49823388	31	4.7	31	93	1	240	30	15	25	28	1.96
49824757--49824789	16	2.1	16	100	0	66	12	30	12	45	1.78
49830380--49830443	32	2.0	32	85	11	87	37	18	7	35	1.80
49836756--49836785	15	1.9	16	93	6	53	50	0	0	50	1.00
49836754--49836809	22	2.6	21	91	8	87	51	0	1	46	1.11
49836764--49836816	19	2.8	19	74	5	54	52	0	1	45	1.11
49836804--49836844	12	3.4	12	81	18	50	56	2	0	41	1.13
49836966--49837013	19	2.2	22	79	20	57	56	4	4	35	1.38
49836975--49837013	19	2.0	21	90	10	64	53	2	2	41	1.28
49847186--49847300	37	2.8	43	76	21	124	29	29	20	20	1.98
49847770--49847829	30	2.0	30	90	0	93	28	25	8	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49855048--49855125	29	2.7	29	83	0	102	26	17	33	21	1.96
49861566--49861597	16	2.1	16	88	11	50	78	0	12	9	0.97
49862740--49862817	29	2.7	29	83	0	102	26	17	33	21	1.96
49869151--49869212	27	2.3	27	85	2	79	41	14	16	27	1.87
49874941--49875004	31	2.1	31	90	0	101	25	23	15	35	1.94
49875197--49875361	23	7.0	24	86	6	221	28	21	21	28	1.99
49875197--49875361	47	3.5	48	86	5	221	28	21	21	28	1.99
49875410--49875476	20	3.3	20	93	0	116	32	20	11	34	1.90
49875410--49875465	11	5.5	11	71	16	57	32	19	12	35	1.89
49875513--49875560	25	1.9	25	86	0	69	25	16	25	33	1.96
49876721--49876804	27	3.1	27	93	3	134	20	26	22	30	1.98
49876866--49877057	56	3.6	52	75	8	172	33	7	17	40	1.79
49876866--49877093	27	8.4	28	74	13	131	34	8	18	38	1.81
49876956--49877052	26	3.7	26	83	1	122	31	6	18	43	1.75
49877044--49877253	27	7.9	27	88	3	275	40	9	22	28	1.84
49877259--49877348	27	3.3	26	83	6	108	32	10	17	40	1.83
49877259--49877363	27	3.9	27	79	9	90	34	9	17	39	1.82
49879921--49879984	31	2.1	31	90	0	101	25	23	15	35	1.94
49880177--49880340	23	7.0	24	88	7	239	28	21	22	28	1.99
49880177--49880340	47	3.5	47	89	5	235	28	21	22	28	1.99
49880389--49880455	20	3.3	20	93	0	116	32	20	11	34	1.90
49880389--49880444	11	5.5	11	71	16	57	32	19	12	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49880491--49880538	25	1.9	25	86	0	69	25	16	25	33	1.96
49881675--49881772	27	3.7	27	86	8	107	22	25	21	30	1.99
49881690--49881772	27	3.1	27	89	6	125	20	26	21	31	1.98
49881838--49882063	27	8.3	27	74	9	129	33	8	19	38	1.82
49881811--49882036	54	4.1	54	74	6	195	32	8	20	38	1.83
49882014--49882225	27	7.9	27	86	5	250	39	8	23	28	1.84
49882231--49882320	27	3.3	27	85	3	119	32	10	17	40	1.83
49882214--49882320	54	2.0	54	81	7	128	30	10	20	38	1.86
49882231--49882335	27	3.9	27	79	9	90	34	9	17	39	1.82
49884372--49884429	27	2.1	28	90	3	91	37	13	18	29	1.90
49887693--49887860	40	4.2	40	80	12	175	23	22	27	26	1.99
49887693--49887860	80	2.1	79	86	4	230	23	22	27	26	1.99
49895275--49895442	40	4.2	40	80	12	175	23	22	27	26	1.99
49895275--49895442	80	2.1	79	86	4	230	23	22	27	26	1.99
49903382--49903513	29	4.6	29	84	1	149	25	16	32	25	1.96
49916952--49917083	29	4.6	29	83	1	149	25	32	16	25	1.96
49923747--49923928	78	2.3	81	85	6	248	25	27	21	24	2.00
49923745--49923928	40	4.7	40	85	8	243	26	27	21	24	1.99
49930209--49930237	14	2.0	15	93	6	51	27	0	20	51	1.47
49931203--49931244	14	2.9	15	79	13	52	40	2	19	38	1.64
49931413--49931537	41	3.0	43	73	17	134	26	15	25	32	1.95
49933800--49933876	25	3.1	25	92	1	120	16	20	23	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49933940--49933989	24	2.1	24	85	3	66	28	16	8	48	1.74
49937348--49937400	24	2.2	24	96	0	97	24	16	18	39	1.91
49946650--49946690	21	2.0	21	90	0	64	26	19	29	24	1.98
49954343--49954383	21	2.0	21	95	0	73	26	21	29	21	1.99
49970627--49970690	33	2.0	33	85	14	89	23	21	26	28	1.99
49972996--49973566	48	11.9	48	95	0	971	34	6	28	30	1.82
49973707--49973809	37	2.8	37	93	0	170	24	19	31	25	1.98
49980799--49980978	49	3.7	48	75	14	156	21	28	20	29	1.98
49980895--49981116	48	4.7	47	78	8	186	21	26	21	30	1.98
49983558--49983717	29	5.5	30	85	8	204	34	13	24	27	1.93
49983587--49983717	59	2.3	57	91	2	208	35	13	23	26	1.92
49985618--49985655	17	2.2	17	86	9	51	50	7	31	10	1.66
49987881--49988010	50	2.6	49	86	1	170	30	29	16	23	1.96
49989953--49990115	39	4.2	39	91	0	263	23	33	20	22	1.97
50002788--50003006	29	7.6	29	81	1	188	27	15	31	25	1.96
50002789--50002948	87	1.8	87	83	2	214	31	15	29	23	1.95
50005296--50005441	40	3.7	40	88	3	197	25	20	26	27	1.99
50005296--50005464	80	2.1	80	82	7	202	26	20	26	27	1.99
50010469--50010528	21	3.0	20	78	7	68	20	23	18	38	1.93
50010738--50010772	13	2.7	13	95	0	61	31	0	5	62	1.18
50018298--50018474	54	3.3	54	82	4	182	41	23	7	27	1.81
50018298--50018474	27	6.6	27	75	11	150	41	23	7	27	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50018384--50018605	54	4.2	54	78	11	192	38	20	16	25	1.92
50018478--50018677	76	2.5	79	84	8	248	37	17	20	24	1.94
50018459--50018657	103	1.9	103	85	4	276	38	19	19	23	1.93
50018473--50018676	27	7.8	26	84	6	227	36	18	20	24	1.95
50018821--50018851	16	1.9	16	93	0	53	29	19	16	35	1.93
50018882--50018950	24	2.8	25	84	2	95	27	26	21	24	1.99
50019171--50019241	31	2.3	31	95	0	124	32	15	23	28	1.95
50021503--50021632	27	4.8	27	85	7	140	37	22	9	30	1.85
50021503--50021632	54	2.4	54	89	2	190	37	22	9	30	1.85
50021617--50021811	27	7.2	27	86	3	250	34	17	21	26	1.95
50021559--50021812	27	9.4	27	82	6	221	35	18	18	27	1.95
50022040--50022090	25	2.1	25	88	3	77	33	17	17	31	1.94
50022015--50022090	24	3.1	25	81	3	84	31	21	19	27	1.97
50022260--50022330	31	2.3	31	95	0	124	32	16	22	28	1.96
50022260--50022338	31	2.5	30	91	4	122	31	18	22	26	1.97
50024568--50024718	27	5.6	27	81	9	157	39	22	9	28	1.85
50024560--50024718	54	3.0	54	85	2	196	38	22	9	28	1.85
50024568--50024718	81	1.9	80	82	6	189	39	22	9	28	1.85
50024703--50024898	27	7.3	27	84	0	239	35	18	20	25	1.95
50024630--50024897	54	5.0	55	84	2	224	36	18	17	26	1.94
50024703--50024897	81	2.4	81	87	0	273	35	17	20	25	1.95
50025101--50025169	24	2.8	25	77	2	77	27	23	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50025126--50025176	25	2.1	24	88	3	75	33	17	17	31	1.94
50025346--50025416	31	2.3	31	92	0	115	30	16	23	28	1.97
50025346--50025424	31	2.5	30	89	4	113	30	18	24	26	1.98
50026556--50026634	25	3.3	25	66	10	74	31	27	6	34	1.82
50026506--50026924	49	8.7	49	92	2	645	30	29	8	31	1.87
50030621--50030812	40	4.8	40	89	0	276	22	26	22	28	1.99
50032515--50032593	25	3.3	25	66	16	67	31	30	5	32	1.79
50032465--50032979	49	10.7	49	95	1	839	30	29	8	31	1.86
50037846--50037894	22	2.2	23	79	17	59	24	46	0	28	1.53
50040005--50040212	40	5.2	39	82	1	200	25	25	21	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410