genome.fa.s13.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  134  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40497259--40497409	40	3.8	40	84	4	180	28	22	25	23	1.99
40497255--40497426	40	4.4	38	77	10	161	29	21	26	23	1.99
40499276--40499320	20	2.2	20	92	0	72	28	15	8	46	1.76
40503023--40503235	55	3.9	54	80	7	245	23	25	16	35	1.95
40503031--40503231	108	1.8	110	88	4	309	23	25	16	34	1.96
40508461--40508491	16	1.9	16	93	0	53	35	0	19	45	1.51
40511768--40511822	21	2.6	22	82	8	69	38	36	14	10	1.81
40521516--40521640	47	2.6	47	78	8	126	37	12	11	38	1.79
40523697--40523751	21	2.7	19	84	13	74	67	1	21	9	1.28
40523732--40523790	16	3.6	16	80	13	66	66	1	23	8	1.29
40525735--40525833	50	1.9	52	89	4	157	32	13	12	42	1.81
40532854--40532878	12	2.1	12	100	0	50	8	24	8	60	1.52
40540619--40540812	47	4.1	47	87	0	262	33	11	28	26	1.92
40540648--40540719	22	3.1	22	64	24	58	33	13	29	23	1.93
40540777--40541064	98	2.9	98	95	3	510	36	7	26	30	1.84
40540782--40541064	48	5.8	48	89	6	444	36	7	26	30	1.84
40541200--40541318	37	3.2	37	85	4	159	23	16	32	26	1.96
40542586--40543055	40	11.8	40	92	0	755	25	21	27	25	2.00
40546960--40547153	47	4.1	47	85	0	244	34	11	27	26	1.91
40547129--40547307	98	1.8	96	92	4	306	36	7	26	30	1.83
40547129--40547307	48	3.7	48	90	4	288	36	7	26	30	1.83
40547443--40547561	37	3.2	37	86	0	166	23	15	32	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40552351--40552516	39	4.2	40	79	3	167	24	26	22	26	2.00
40552367--40552516	79	1.9	79	83	5	196	24	26	22	26	2.00
40560408--40560592	79	2.3	81	81	7	209	24	27	23	24	2.00
40560401--40560592	40	4.8	40	79	5	192	23	27	23	25	2.00
40567610--40567691	6	13.3	6	71	19	62	46	14	19	19	1.84
40567610--40567691	19	4.4	18	73	18	62	46	14	19	19	1.84
40567624--40567691	25	2.7	25	86	4	93	45	14	20	19	1.85
40567809--40567909	27	3.8	26	80	8	105	35	18	22	22	1.96
40568480--40568747	27	10.3	27	83	7	313	25	20	20	34	1.96
40568590--40568626	19	1.9	19	100	0	74	27	27	18	27	1.98
40568480--40568736	126	2.0	127	88	3	385	25	21	20	33	1.97
40568507--40568709	99	2.0	100	90	2	320	26	20	19	33	1.96
40568607--40568774	81	2.1	80	83	5	214	26	19	19	35	1.95
40568732--40568894	27	6.2	27	74	5	100	30	7	23	38	1.82
40568817--40568934	54	2.2	54	86	3	157	37	8	21	33	1.83
40568846--40568934	27	3.3	27	87	0	133	39	7	21	31	1.82
40568939--40569033	27	3.5	27	82	5	120	28	8	22	41	1.83
40571432--40571608	35	5.1	35	81	5	214	41	28	12	16	1.86
40573386--40573415	16	1.9	15	93	6	51	43	3	6	46	1.46
40577517--40577590	36	2.1	36	94	0	130	28	22	21	27	1.99
40579522--40579564	21	2.0	21	86	8	61	41	0	23	34	1.55
40580246--40580493	33	7.6	33	79	3	187	36	13	22	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40580246--40580411	65	2.5	65	77	9	194	34	12	22	30	1.91
40580251--40580457	98	2.1	98	79	0	216	35	12	23	28	1.91
40587980--40588109	40	3.2	40	84	4	174	23	29	24	22	1.99
40591027--40591173	33	4.5	33	94	1	251	38	8	23	29	1.85
40591182--40591297	33	3.6	32	79	6	126	33	14	25	26	1.94
40600088--40600190	44	2.4	42	83	4	125	25	20	23	31	1.98
40605482--40605655	48	3.6	48	83	3	217	28	19	28	22	1.98
40605482--40605655	94	1.8	95	86	1	251	28	19	28	22	1.98
40612870--40613001	29	4.5	29	97	1	237	24	23	14	37	1.92
40612870--40613001	59	2.3	59	95	1	239	24	23	14	37	1.92
40620729--40620860	29	4.5	29	97	1	237	24	23	14	37	1.92
40620729--40620860	59	2.3	59	95	1	239	24	23	14	37	1.92
40622553--40622620	27	2.5	28	97	2	129	29	11	26	32	1.92
40622553--40622634	27	3.0	27	87	5	76	29	13	24	32	1.93
40629836--40629903	27	2.5	28	97	2	129	29	11	26	32	1.92
40629836--40629917	27	3.0	27	87	5	76	29	13	24	32	1.93
40634991--40635121	30	4.5	30	86	8	171	32	13	25	28	1.94
40634991--40635121	58	2.2	58	86	4	174	32	13	25	28	1.94
40642990--40643175	40	4.7	40	86	7	220	26	21	26	25	1.99
40647705--40647859	40	3.9	39	85	5	177	23	22	27	26	2.00
40649332--40649401	27	2.6	27	93	2	113	30	28	14	27	1.95
40658347--40658388	22	1.9	22	85	9	59	38	0	19	42	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40659073--40659327	40	6.4	40	88	2	336	23	21	27	27	1.99
40661538--40661683	43	3.3	43	70	20	129	33	6	3	56	1.41
40661579--40661728	48	3.2	47	66	16	132	36	4	3	55	1.37
40661538--40661727	91	2.1	91	93	2	319	35	5	3	55	1.40
40661497--40661806	105	3.1	102	81	13	383	36	5	3	53	1.42
40661711--40661752	10	3.4	13	78	21	54	33	0	0	66	0.92
40661910--40662012	27	4.0	27	74	12	108	46	14	3	34	1.63
40661905--40662003	18	5.3	18	74	9	81	44	16	3	36	1.63
40661905--40661972	9	7.6	9	83	0	82	47	16	1	35	1.56
40663260--40663302	14	3.1	14	96	3	79	34	0	6	58	1.25
40663719--40663768	21	2.4	21	82	0	64	30	20	48	2	1.61
40668110--40668149	20	2.1	18	86	9	53	52	0	2	45	1.14
40668984--40669031	14	3.5	13	75	13	51	54	6	6	33	1.51
40673378--40673434	3	19.0	3	100	0	114	66	0	0	33	0.92
40674346--40674453	24	4.5	24	90	0	153	24	13	28	33	1.94
40682450--40682532	24	3.5	24	85	3	105	25	13	27	33	1.93
40683821--40683846	2	13.0	2	100	0	52	50	0	0	50	1.00
40684178--40684208	16	1.9	16	93	0	53	74	6	9	9	1.23
40689055--40689177	46	2.7	46	93	0	201	30	26	21	21	1.98
40691146--40691246	39	2.6	39	87	0	148	37	21	26	13	1.91
40707496--40707754	40	6.5	40	94	2	425	22	23	26	27	2.00
40710841--40711230	195	2.0	194	96	1	719	32	14	15	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40720475--40720605	30	4.5	30	85	10	164	28	25	13	32	1.94
40720474--40720605	58	2.3	57	84	7	167	28	25	13	32	1.94
40724627--40724793	40	4.2	40	82	2	185	25	27	21	25	1.99
40724627--40724793	80	2.1	79	83	7	205	25	27	21	25	1.99
40725618--40725663	17	2.5	19	74	22	53	34	23	17	23	1.96
40732626--40732791	40	4.2	40	80	6	178	25	27	21	25	1.99
40733616--40733661	17	2.5	19	74	22	53	34	23	17	23	1.96
40734393--40734521	40	3.3	39	77	6	143	24	27	24	24	2.00
40734408--40734557	40	3.8	40	78	6	146	22	26	24	27	1.99
40734408--40734555	80	1.9	78	83	8	192	21	27	24	27	1.99
40744205--40744334	40	3.3	39	76	8	136	23	27	23	24	2.00
40744221--40744372	40	3.8	40	78	6	148	22	26	23	27	1.99
40744221--40744370	80	1.9	80	83	8	198	22	26	24	27	1.99
40752224--40752310	40	2.2	40	83	4	113	24	28	22	24	1.99
40757932--40757956	13	1.9	13	100	0	50	84	0	0	16	0.63
40760002--40760108	55	1.9	55	80	0	124	13	28	28	30	1.94
40765758--40765795	20	1.9	20	88	0	58	50	5	5	39	1.48
40768095--40768133	20	1.9	21	89	5	62	35	15	0	48	1.45
40768305--40768471	43	4.0	42	76	9	178	29	28	17	23	1.97
40771549--40771634	37	2.3	37	91	0	145	23	33	18	24	1.97
40771735--40772092	49	7.4	49	96	1	591	29	31	8	29	1.88
40780114--40780253	49	2.8	49	83	1	172	25	17	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40780108--40780253	50	2.9	50	82	1	177	25	16	28	29	1.97
40784116--40784140	13	1.9	13	100	0	50	32	16	24	28	1.96
40785481--40785668	50	3.8	49	84	2	225	25	18	26	29	1.98
40785481--40785672	98	1.9	101	86	4	273	25	18	26	30	1.98
40789460--40789519	27	2.3	27	88	2	86	36	26	10	26	1.88
40792559--40792932	193	1.9	193	87	1	543	35	21	14	28	1.93
40794694--40794718	13	1.9	13	100	0	50	32	4	24	40	1.73
40795824--40795987	43	3.8	44	75	12	162	25	16	26	31	1.97
40799135--40799317	79	2.3	81	84	7	232	25	27	22	24	2.00
40799114--40799317	40	5.1	40	82	8	238	25	27	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410