genome.fa.s13.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  182  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55507471--55507520	25	2.0	25	96	0	91	22	16	30	32	1.95
55509530--55509627	42	2.3	42	78	5	117	29	16	20	33	1.94
55513514--55513621	56	1.9	55	90	1	171	36	7	14	41	1.74
55514663--55514696	10	3.3	10	91	4	50	47	0	0	52	1.00
55517439--55517530	30	3.1	30	100	0	184	26	16	22	34	1.95
55519356--55519508	39	3.9	39	89	4	236	23	20	32	23	1.98
55519357--55519538	39	4.6	38	86	3	211	23	21	31	23	1.98
55522948--55523111	71	2.3	71	93	0	274	19	26	17	36	1.94
55524670--55524766	28	3.5	28	88	4	144	21	8	25	44	1.80
55525219--55525281	27	2.4	27	74	12	67	36	23	20	19	1.95
55525263--55525458	27	7.3	26	76	4	158	30	10	18	40	1.85
55525315--55525472	54	2.9	54	80	1	174	32	8	20	38	1.83
55525450--55525681	27	8.6	27	79	8	222	40	8	21	29	1.82
55525452--55525681	81	2.8	81	82	3	284	40	8	21	29	1.82
55528899--55528995	28	3.5	28	90	4	144	20	7	26	45	1.77
55529616--55529677	27	2.3	27	91	0	97	27	16	16	40	1.89
55529630--55529812	27	6.8	27	78	1	170	30	9	19	39	1.84
55529631--55529812	81	2.2	81	83	3	215	30	9	19	40	1.83
55529804--55530036	27	8.6	27	79	7	222	41	7	21	29	1.81
55529660--55529837	54	3.3	54	80	1	169	32	7	20	38	1.82
55529805--55530038	81	2.9	80	81	2	272	40	7	22	29	1.82
55538057--55538219	71	2.3	71	97	1	310	19	28	17	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55538057--55538253	71	2.8	70	90	4	231	20	28	16	33	1.95
55545736--55545815	29	2.8	28	85	7	99	25	35	15	25	1.94
55545736--55545815	28	2.8	28	85	7	99	25	35	15	25	1.94
55548406--55548468	24	2.6	24	100	0	126	20	17	26	34	1.95
55555478--55555564	24	3.6	24	100	0	174	20	17	26	35	1.95
55555478--55555586	48	2.3	48	90	3	166	23	17	24	33	1.96
55563301--55563397	45	2.2	45	84	0	131	40	16	18	24	1.91
55564403--55564456	20	2.7	20	97	0	99	53	3	22	20	1.61
55569782--55569932	40	3.8	40	77	13	141	25	24	27	22	2.00
55569819--55569948	40	3.2	40	80	2	154	23	23	27	24	2.00
55577777--55577927	40	3.8	40	77	13	141	25	24	27	22	2.00
55583489--55583620	29	4.6	29	88	0	165	29	15	31	24	1.95
55586408--55586506	28	3.5	29	83	6	114	30	27	15	27	1.96
55586622--55586654	2	16.5	2	93	0	57	45	0	3	51	1.16
55596703--55596874	46	3.7	46	81	10	215	22	20	27	29	1.98
55596700--55596871	93	1.8	93	93	0	299	22	20	27	28	1.99
55598694--55598763	27	2.6	27	90	2	113	30	28	12	28	1.93
55606567--55606634	26	2.5	28	86	11	106	30	27	13	27	1.94
55610884--55611095	46	4.5	46	72	11	144	29	18	26	25	1.98
55610882--55611095	94	2.3	94	83	1	268	29	19	26	24	1.98
55610884--55611198	48	6.6	48	74	9	218	30	18	26	24	1.98
55611012--55611193	49	3.8	48	73	10	145	31	16	28	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55614333--55614494	40	4.1	40	80	4	168	25	27	20	25	1.99
55614333--55614494	78	2.0	80	80	2	184	25	27	20	25	1.99
55622503--55622772	47	5.7	47	92	1	396	28	30	8	32	1.87
55622503--55622772	96	2.8	94	88	3	396	28	30	8	32	1.87
55625479--55625715	40	5.9	40	91	0	339	27	30	20	22	1.98
55628234--55628503	47	5.7	47	92	1	396	28	30	8	32	1.87
55628234--55628503	96	2.8	94	88	3	396	28	30	8	32	1.87
55631657--55631818	40	4.1	40	81	4	166	25	28	20	25	1.99
55631657--55631818	80	2.0	80	81	2	191	25	28	20	25	1.99
55637071--55637322	68	3.9	64	78	11	237	29	16	28	24	1.97
55638973--55639228	130	2.0	129	98	0	494	37	20	10	30	1.87
55640309--55640413	47	2.2	47	96	0	192	27	30	7	34	1.85
55644299--55644574	40	6.9	40	90	0	417	26	28	23	20	1.99
55644615--55644706	38	2.4	38	83	0	112	25	25	20	29	1.99
55645438--55645693	130	2.0	129	96	0	476	37	20	11	31	1.88
55646774--55646878	47	2.2	47	94	0	183	27	30	6	35	1.83
55648755--55648824	27	2.5	28	95	2	124	28	14	27	30	1.95
55648755--55648836	27	3.0	27	85	8	78	29	15	24	30	1.96
55654565--55654633	28	2.5	28	95	2	122	43	27	10	18	1.82
55659416--55659485	27	2.5	28	95	2	124	28	14	27	30	1.95
55659416--55659497	27	3.0	27	85	8	78	29	15	24	30	1.96
55662137--55662249	40	2.8	39	84	4	129	24	29	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55666271--55666368	28	3.6	27	69	14	83	29	29	19	21	1.97
55666240--55666370	56	2.4	56	94	1	228	29	32	18	20	1.96
55666352--55666406	25	2.2	25	90	6	85	27	30	12	29	1.93
55667477--55667517	20	2.0	20	95	0	73	43	9	14	31	1.78
55669004--55669039	2	18.0	2	94	0	63	47	0	0	52	1.00
55672839--55673006	40	4.2	40	80	4	169	25	22	27	24	2.00
55675193--55675227	2	17.5	2	100	0	70	48	0	0	51	1.00
55676707--55676841	56	2.4	56	92	2	227	31	25	16	27	1.96
55681828--55681860	2	16.5	2	100	0	66	51	0	0	48	1.00
55690861--55690984	48	2.6	48	79	5	119	22	29	19	28	1.98
55692759--55692977	40	5.5	39	85	4	233	26	23	26	22	2.00
55692760--55692991	80	2.9	79	82	2	257	27	23	27	21	1.99
55692760--55692977	120	1.8	120	83	4	287	26	23	27	22	2.00
55695309--55695517	49	4.3	49	89	3	300	29	30	8	32	1.86
55704004--55704194	40	4.8	40	82	1	204	25	23	26	24	2.00
55704006--55704194	80	2.3	80	82	2	227	25	22	26	24	2.00
55704006--55704222	80	2.7	79	76	9	215	26	23	25	24	2.00
55706806--55706835	15	2.0	15	100	0	60	40	6	33	20	1.78
55714673--55714742	27	2.5	28	90	2	106	30	30	14	25	1.95
55716682--55716832	43	3.6	43	84	3	164	23	29	20	26	1.99
55716630--55716845	81	2.6	85	78	9	210	24	29	18	26	1.98
55716707--55716832	43	3.0	43	86	6	177	22	30	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55716724--55716874	43	3.5	46	79	15	128	23	29	21	24	1.99
55718540--55718569	15	2.1	15	93	6	53	36	26	6	30	1.82
55741831--55741991	29	5.6	29	87	1	207	26	32	16	25	1.96
55749315--55749446	29	4.6	29	83	1	149	25	32	16	25	1.96
55761071--55761238	40	4.2	40	77	1	149	23	27	23	26	2.00
55761087--55761236	80	1.9	80	83	5	196	22	27	24	26	1.99
55767723--55767786	31	2.1	31	87	0	92	25	25	14	35	1.93
55767999--55768146	24	6.2	24	94	1	244	27	20	22	30	1.98
55768196--55768256	20	3.0	20	92	0	104	32	21	11	34	1.89
55768299--55768346	25	1.9	25	86	0	69	25	16	25	33	1.96
55772341--55772457	46	2.5	46	83	4	128	29	17	29	23	1.97
55776659--55776693	16	2.2	16	94	0	61	5	17	25	51	1.67
55776667--55776701	16	2.2	16	89	0	52	8	20	20	51	1.73
55779372--55779488	43	2.7	42	84	5	110	32	21	17	29	1.96
55781268--55781444	40	4.5	40	82	6	186	23	22	28	26	1.99
55794516--55794553	20	1.9	20	88	0	58	31	2	10	55	1.48
55795940--55796008	28	2.5	28	95	2	122	43	27	10	18	1.82
55802270--55802307	20	1.9	20	88	0	58	34	2	10	52	1.50
55804947--55805053	40	2.7	40	82	0	124	28	22	25	23	1.99
55804988--55805114	40	3.2	39	83	8	141	22	24	29	23	1.99
55811714--55811748	17	2.1	17	88	0	52	82	5	11	0	0.82
55812989--55813095	40	2.7	40	82	0	124	28	22	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55813030--55813156	40	3.2	40	83	8	143	22	23	29	24	1.99
55816206--55816273	35	1.9	35	81	0	82	23	14	30	30	1.94
55823974--55824013	19	2.1	19	100	0	80	30	20	25	25	1.99
55838364--55838570	40	5.2	39	81	4	193	25	25	23	25	2.00
55838364--55838569	79	2.6	80	79	6	213	25	25	23	25	2.00
55840546--55840573	12	2.3	12	100	0	56	28	42	21	7	1.79
55843340--55843364	11	2.3	11	100	0	50	24	0	0	76	0.80
55844993--55845135	43	3.3	43	79	6	148	23	18	25	32	1.97
55847585--55847750	43	3.9	43	76	8	169	27	16	24	31	1.96
55851224--55851249	13	2.0	13	100	0	52	15	38	30	15	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410