genome.fa.s13.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  156  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47460973--47461455	81	6.0	81	72	6	282	38	21	8	31	1.83
47461467--47461670	27	7.6	27	92	0	318	34	19	21	24	1.96
47461413--47461670	81	3.2	82	86	4	285	35	20	18	25	1.95
47462115--47462179	22	3.0	22	75	8	69	23	23	20	33	1.97
47462338--47462439	27	3.8	27	83	5	107	16	23	22	37	1.94
47462599--47462695	6	15.8	6	74	16	83	19	18	15	46	1.84
47462589--47462686	31	3.2	31	94	0	160	19	19	14	46	1.83
47467020--47467080	21	3.0	21	86	11	90	14	37	26	21	1.92
47470147--47470269	49	2.5	49	95	0	219	26	10	33	29	1.90
47470372--47470449	37	2.1	37	100	0	156	28	19	32	20	1.97
47472462--47472771	29	10.7	29	95	1	505	25	17	32	24	1.96
47473255--47473353	41	2.4	41	80	11	114	26	25	24	24	2.00
47476456--47476578	49	2.5	49	95	0	219	26	10	33	29	1.90
47476681--47476758	37	2.1	37	100	0	156	28	19	32	20	1.97
47489629--47489799	40	4.3	39	77	10	159	28	21	26	23	1.99
47495636--47495800	42	3.9	42	76	4	163	29	14	26	30	1.95
47510187--47510213	2	13.5	2	100	0	54	51	0	0	48	1.00
47510228--47510359	65	2.0	65	100	0	264	24	31	10	34	1.89
47510239--47510340	32	3.2	32	66	18	93	25	29	8	36	1.86
47510343--47510558	47	4.6	47	95	0	369	26	31	12	30	1.92
47510343--47510584	94	2.5	94	89	2	376	27	30	11	30	1.92
47520706--47520743	17	2.2	17	100	0	76	15	21	42	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47520757--47520834	29	2.7	29	83	0	102	26	17	33	21	1.96
47532710--47532839	50	2.6	49	91	1	197	30	28	16	24	1.96
47532710--47532893	101	1.8	99	85	2	260	28	27	18	25	1.98
47534670--47534708	15	2.5	15	91	4	60	56	15	12	15	1.68
47537096--47537320	124	1.8	124	86	1	326	30	10	24	35	1.88
47537315--47537444	40	3.2	40	81	4	156	22	25	28	23	1.99
47541013--47541188	50	3.5	49	83	3	217	28	26	18	26	1.98
47541013--47541196	101	1.8	99	85	2	260	28	26	18	26	1.98
47542108--47542241	27	5.0	27	77	0	115	40	20	8	31	1.81
47542117--47542241	54	2.3	54	80	2	144	41	20	8	30	1.80
47542225--47542285	27	2.3	27	91	0	104	39	21	9	29	1.85
47542220--47542296	27	2.8	26	80	7	91	37	20	11	29	1.88
47542332--47542556	27	8.3	27	86	1	281	33	20	22	24	1.97
47542983--47543046	22	2.9	22	79	9	76	20	21	23	34	1.97
47543205--47543303	27	3.7	26	85	5	108	21	23	19	36	1.95
47543466--47543562	6	15.8	6	73	16	74	20	17	14	47	1.82
47543456--47543578	31	4.0	31	82	3	142	20	17	13	48	1.80
47545516--47545640	27	4.6	27	84	2	162	40	21	8	28	1.83
47545516--47545701	81	2.3	81	82	3	205	39	21	9	29	1.85
47545624--47545684	27	2.3	27	88	0	95	40	21	9	27	1.85
47545516--47545694	27	6.6	25	74	13	90	40	22	9	27	1.85
47545690--47545748	27	2.2	27	84	0	73	30	23	10	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47545733--47545899	27	6.2	26	82	6	174	33	19	20	25	1.97
47545733--47545882	54	2.8	54	85	2	203	34	21	20	24	1.97
47545742--47545901	81	2.0	80	88	3	241	33	20	20	25	1.97
47546328--47546387	22	2.7	22	84	7	77	20	23	21	35	1.96
47546547--47546646	27	3.7	27	79	10	87	22	22	19	37	1.95
47546798--47546895	31	3.2	31	85	5	126	22	17	13	46	1.82
47550231--47550381	27	5.6	27	87	3	214	27	20	10	41	1.85
47550200--47550392	54	3.6	54	81	4	174	29	22	9	37	1.87
47550200--47550381	81	2.2	81	85	3	233	28	22	10	38	1.87
47550279--47550410	54	2.4	54	83	2	140	28	21	12	37	1.89
47551622--47551669	25	1.9	25	91	0	78	35	25	14	25	1.94
47551708--47551764	9	5.9	9	73	15	51	35	8	21	35	1.84
47551706--47551776	20	3.5	20	94	0	124	35	11	21	32	1.89
47551717--47551771	11	5.4	11	70	16	55	36	12	20	30	1.90
47551823--47551988	24	7.1	23	94	3	271	28	21	21	28	1.98
47551822--47552010	24	8.0	23	91	4	265	28	21	21	28	1.99
47551821--47551988	70	2.4	71	94	2	295	28	22	20	28	1.98
47569361--47569483	54	2.3	54	80	2	131	21	21	23	33	1.97
47570339--47570408	33	2.1	33	100	0	140	45	11	8	34	1.71
47570548--47570681	26	5.2	26	62	8	76	40	22	16	20	1.91
47575219--47575423	53	3.8	54	79	1	214	18	24	19	37	1.94
47587348--47587386	19	2.1	19	100	0	78	41	23	10	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47588965--47589140	68	2.6	68	78	12	175	21	26	15	36	1.94
47590889--47591105	40	5.5	40	87	2	269	23	23	28	24	1.99
47600186--47600361	46	3.8	45	79	12	187	20	20	29	29	1.98
47600182--47600353	93	1.8	93	91	0	281	20	20	30	28	1.98
47604390--47604518	46	2.8	46	95	0	222	21	20	27	30	1.98
47614641--47614793	39	3.9	39	93	0	252	23	32	20	24	1.98
47622583--47622775	39	4.9	39	90	0	251	23	31	21	23	1.98
47622613--47622775	39	4.2	39	93	0	263	24	31	20	23	1.98
47625972--47626009	15	2.5	15	95	0	67	31	13	0	55	1.38
47626654--47626707	27	2.0	27	85	0	72	38	14	7	38	1.75
47629504--47629734	40	5.8	40	84	4	263	21	22	29	26	1.99
47629504--47629734	80	2.9	80	84	3	297	21	22	29	26	1.99
47637589--47637844	40	6.5	39	89	2	311	22	23	28	25	1.99
47637589--47637818	120	1.9	119	89	4	356	21	23	29	25	1.99
47640824--47640860	7	5.3	7	100	0	74	13	0	29	56	1.37
47642542--47642572	15	2.1	15	100	0	62	32	0	32	35	1.58
47645442--47645495	26	2.1	26	100	0	108	33	11	18	37	1.86
47646794--47646821	13	2.2	13	100	0	56	28	14	25	32	1.94
47647149--47647212	15	4.1	15	80	11	74	28	0	4	67	1.11
47647136--47647207	33	2.2	33	84	2	90	29	1	5	63	1.25
47647146--47647209	33	1.9	33	90	0	101	31	0	4	64	1.14
47649408--47649727	48	6.8	46	81	5	277	25	30	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47649408--47649666	45	5.6	45	85	3	266	24	31	17	26	1.97
47651451--47651510	30	2.0	30	83	0	75	40	5	25	30	1.77
47655763--47655980	40	5.5	40	93	2	354	25	28	22	22	1.99
47664025--47664241	79	2.8	80	90	4	327	25	27	23	23	2.00
47664025--47664241	40	5.5	40	91	3	327	25	27	23	23	2.00
47668380--47668555	46	3.9	44	79	12	194	22	20	28	28	1.98
47671469--47671531	15	4.3	15	80	9	76	9	15	14	60	1.59
47678716--47678774	29	2.0	30	83	3	75	42	6	22	28	1.79
47682085--47682118	13	2.4	15	80	19	54	20	0	5	73	1.04
47682161--47682229	21	3.3	21	87	2	95	11	24	8	55	1.64
47686044--47686210	40	4.2	40	81	3	187	24	22	27	25	2.00
47694326--47694493	40	4.2	40	80	3	196	25	22	27	25	2.00
47695901--47695959	32	1.9	32	83	13	79	47	3	15	33	1.62
47697276--47697448	46	3.7	46	78	13	210	21	21	27	28	1.99
47697273--47697443	93	1.8	93	96	0	315	21	21	28	28	1.99
47700395--47700438	15	2.9	15	80	12	54	11	15	15	56	1.66
47702844--47703016	46	3.7	46	77	13	192	21	20	28	29	1.98
47702841--47703011	93	1.8	93	93	0	297	21	21	29	28	1.98
47705093--47705127	13	2.7	13	100	0	70	28	37	25	8	1.85
47713794--47713824	2	15.5	2	100	0	62	51	0	0	48	1.00
47723088--47723189	40	2.5	40	82	6	118	21	27	27	23	1.99
47727783--47727932	43	3.5	43	75	8	146	28	16	22	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47732815--47732934	55	2.2	55	84	3	152	24	29	28	18	1.98
47737534--47737921	194	2.0	194	95	0	704	37	14	21	26	1.92
47741366--47741466	43	2.3	43	83	3	132	28	20	18	31	1.97
47744089--47744126	19	2.0	20	85	15	53	36	0	23	39	1.55
47757427--47757466	2	20.0	2	100	0	80	50	0	0	50	1.00
47759240--47759294	25	2.2	25	87	6	76	27	29	12	30	1.93
47759425--47759545	43	2.8	43	88	0	170	34	31	21	12	1.90
47759549--47759704	40	3.9	40	94	0	267	27	29	22	20	1.98
47760405--47760548	6	23.3	6	72	18	100	50	13	15	20	1.78
47760414--47760524	43	2.6	43	85	2	143	49	13	16	20	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410