genome.fa.s13.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  174  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53498443--53498519	31	2.5	31	93	0	127	31	23	14	31	1.94
53498543--53498634	42	2.2	42	90	0	139	34	22	14	28	1.93
53498779--53498875	26	3.8	26	90	4	162	25	22	24	26	2.00
53498779--53498875	51	1.9	51	95	4	178	25	22	24	26	2.00
53499679--53499757	27	2.9	27	94	3	133	20	26	22	30	1.98
53499818--53499869	27	1.9	27	88	7	79	32	15	11	40	1.83
53499826--53500154	54	6.1	54	77	9	161	30	8	20	40	1.83
53499867--53500154	54	5.3	54	78	5	253	30	8	20	40	1.82
53499906--53500140	81	2.9	81	88	0	337	30	8	20	40	1.81
53499901--53500154	27	9.4	27	78	2	242	31	8	20	39	1.82
53500132--53500262	27	4.9	27	88	1	183	41	9	19	28	1.83
53500122--53500307	81	2.3	80	75	5	185	37	9	20	32	1.84
53505718--53505767	25	2.0	25	100	0	100	56	20	8	16	1.65
53509586--53509714	40	3.3	39	82	7	111	23	26	25	24	2.00
53509621--53509767	78	1.9	80	85	5	210	24	27	23	24	2.00
53509602--53509767	40	4.2	37	77	9	125	24	27	24	24	2.00
53517668--53517796	40	3.3	39	82	7	111	23	26	25	24	2.00
53517703--53517849	78	1.9	80	85	5	210	24	27	23	24	2.00
53517684--53517849	40	4.2	37	77	9	125	24	27	24	24	2.00
53520918--53521001	28	3.0	29	87	5	111	27	33	15	23	1.95
53524878--53524935	26	2.2	26	81	6	64	18	13	34	32	1.91
53524899--53524951	25	2.1	26	89	3	81	24	13	30	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53525740--53525794	14	3.9	14	90	0	83	40	5	32	21	1.76
53528526--53528738	94	2.3	92	82	4	248	24	24	20	30	1.98
53530478--53530570	46	2.0	46	89	0	141	27	23	20	27	1.99
53542515--53542548	15	2.3	15	89	0	50	61	2	8	26	1.40
53542864--53542894	16	1.9	16	93	0	53	45	0	0	54	0.99
53547562--53547739	96	1.9	96	86	4	261	9	28	16	44	1.79
53567680--53567739	24	2.5	22	75	15	57	40	1	1	56	1.19
53568113--53568165	20	2.7	20	79	2	54	18	11	18	50	1.76
53569188--53569286	50	1.9	52	83	4	130	34	12	13	40	1.81
53572431--53572611	46	3.9	46	81	9	233	20	21	29	27	1.98
53572433--53572603	93	1.8	93	96	0	315	20	22	29	27	1.98
53578562--53578611	10	5.0	10	81	13	59	22	8	2	68	1.26
53579313--53579346	18	1.9	18	94	5	61	26	5	5	61	1.42
53584279--53584467	29	6.5	29	85	3	238	26	16	30	25	1.97
53592262--53592346	29	2.9	29	100	0	170	30	14	28	27	1.95
53598582--53598789	40	5.2	40	79	6	197	25	24	25	24	2.00
53598624--53598789	80	2.1	80	85	4	219	24	25	27	22	2.00
53602408--53602637	50	4.6	49	76	11	189	29	26	18	26	1.98
53606364--53606402	21	1.9	21	89	5	62	7	7	2	82	0.94
53610097--53610121	2	12.5	2	100	0	50	48	0	0	52	1.00
53613251--53613432	40	4.5	40	86	3	199	26	26	21	24	1.99
53613292--53613432	40	3.5	40	92	0	219	26	26	21	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53618522--53618649	46	2.8	46	87	0	193	32	28	19	20	1.97
53622336--53622393	29	2.0	29	96	0	107	39	0	25	34	1.56
53629920--53629961	19	2.2	19	91	4	66	57	9	4	28	1.51
53630108--53630140	17	1.9	17	100	0	66	36	0	0	63	0.95
53630387--53630441	16	3.4	16	89	0	83	27	30	7	34	1.84
53638311--53638391	41	2.0	41	95	0	144	45	13	6	34	1.69
53638426--53638466	19	2.2	19	95	0	73	43	12	4	39	1.63
53643477--53643546	27	2.5	28	95	2	124	28	14	27	30	1.95
53643477--53643558	27	3.0	27	85	8	78	29	15	24	30	1.96
53646245--53646341	42	2.3	41	81	8	115	48	14	4	32	1.63
53646358--53646397	19	2.2	18	90	4	62	45	15	2	37	1.59
53653419--53653471	25	2.2	25	86	3	72	24	15	26	33	1.95
53654724--53654846	43	2.9	42	80	2	156	24	15	26	34	1.95
53659048--53659104	30	2.0	28	86	6	78	14	29	3	52	1.58
53660172--53660211	12	3.6	12	83	16	59	20	7	7	65	1.43
53664461--53664647	99	1.9	100	92	1	313	29	25	18	26	1.98
53664456--53664649	49	3.9	49	76	4	156	29	25	18	26	1.98
53664469--53664642	49	3.5	49	76	4	197	30	25	17	27	1.97
53666173--53666213	22	1.9	22	95	5	75	17	29	43	9	1.80
53669147--53669339	43	4.5	43	86	1	264	24	19	28	27	1.98
53676281--53676321	20	2.0	21	90	4	66	60	2	0	36	1.10
53682268--53682412	40	3.6	40	84	4	184	24	25	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53683121--53683152	2	16.0	2	93	0	55	50	3	0	46	1.17
53690153--53690409	43	5.8	43	85	6	327	24	19	29	26	1.98
53690145--53690409	93	3.0	87	80	7	336	24	18	28	27	1.98
53690974--53691006	16	1.9	18	88	11	52	18	12	18	51	1.76
53695528--53695590	26	2.4	26	100	0	126	14	41	15	28	1.87
53696515--53696612	41	2.4	41	82	1	126	33	16	16	33	1.91
53700814--53700846	17	1.9	17	93	0	57	6	30	42	21	1.77
53704616--53704674	28	2.1	29	87	3	84	42	27	0	30	1.56
53704889--53704922	9	3.8	9	92	0	59	82	5	8	2	0.93
53704889--53704923	18	1.9	18	100	0	70	80	5	8	5	1.03
53705991--53706046	30	1.9	28	85	7	76	53	3	30	12	1.55
53709280--53709339	29	2.1	29	90	0	93	41	28	0	30	1.56
53709286--53709333	15	3.3	15	73	5	53	43	25	0	31	1.55
53714813--53714892	38	2.1	38	88	0	115	21	20	27	31	1.98
53714885--53715008	42	2.9	43	89	2	196	12	26	32	28	1.93
53715976--53716013	17	2.2	17	100	0	76	10	15	34	39	1.82
53716620--53716722	48	2.1	48	80	7	111	32	21	27	19	1.97
53720329--53720398	27	2.5	28	93	2	115	27	14	30	28	1.95
53720329--53720410	27	3.0	27	84	8	69	28	15	26	29	1.96
53727856--53727985	40	3.2	40	78	2	145	24	23	27	23	2.00
53727818--53727985	80	2.1	80	81	6	198	26	23	26	22	2.00
53731446--53731514	27	2.6	27	95	0	120	27	14	28	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53731446--53731526	27	3.0	27	85	7	76	28	16	25	29	1.96
53740540--53740602	32	2.0	32	96	0	117	28	28	19	23	1.98
53742966--53742992	10	2.7	10	100	0	54	18	11	29	40	1.85
53748154--53748189	14	2.7	14	91	8	58	8	8	8	75	1.21
53755102--53755197	30	3.2	30	72	5	88	27	27	16	29	1.97
53757193--53757269	40	1.9	39	84	2	100	28	14	25	31	1.95
53761527--53761561	2	17.5	2	100	0	70	51	0	48	0	1.00
53765466--53765636	39	4.4	39	92	0	288	29	20	26	23	1.99
53769559--53769589	15	2.1	15	93	0	53	54	25	0	19	1.44
53775639--53775826	40	4.7	40	90	1	270	26	27	21	24	1.99
53775623--53775826	80	2.5	79	88	3	300	27	27	21	23	1.99
53783707--53784068	40	9.1	39	88	3	440	28	28	19	23	1.98
53783707--53784053	119	2.9	120	86	3	486	29	28	18	23	1.98
53788237--53788275	20	2.0	20	85	5	53	30	15	2	51	1.57
53790408--53790504	30	3.2	30	74	8	99	28	15	27	27	1.96
53794798--53794880	30	2.7	30	81	9	89	13	21	1	63	1.35
53794831--53794886	18	3.1	18	76	5	51	7	19	3	69	1.27
53794856--53794880	12	2.1	12	100	0	50	8	16	0	76	1.02
53794947--53795003	5	11.0	5	75	20	55	3	17	1	77	1.00
53794947--53795003	16	3.7	14	82	15	60	3	17	1	77	1.00
53794947--53795014	21	3.2	21	76	15	61	2	17	2	76	1.04
53795932--53795973	12	3.6	12	81	15	52	19	7	2	71	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53795916--53795990	39	1.9	38	81	10	89	18	8	4	69	1.30
53797638--53797734	30	3.2	30	73	2	88	28	13	27	29	1.94
53798700--53798816	27	4.3	27	88	4	173	27	11	20	41	1.86
53798714--53798852	54	2.6	54	83	2	172	26	15	19	38	1.91
53798702--53798862	81	2.0	82	82	3	200	26	13	20	39	1.90
53799160--53799207	18	2.7	18	80	0	60	18	22	16	41	1.90
53807116--53807212	30	3.2	30	76	2	106	27	16	27	27	1.97
53809066--53809094	9	3.2	9	100	0	58	10	44	0	44	1.38
53809323--53809405	30	2.7	30	81	9	89	13	21	1	63	1.35
53809356--53809411	18	3.1	18	76	5	51	7	19	3	69	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410