genome.fa.s13.2.7.7.80.10.50.1000.226.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  226  of  410  ( 49152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69496734--69496816	20	4.2	20	96	0	157	32	19	12	36	1.88
69496734--69496805	11	7.1	11	70	17	66	31	19	12	36	1.89
69496853--69496900	25	1.9	25	82	0	60	25	14	25	35	1.94
69500825--69500909	41	2.1	41	97	0	161	40	18	16	24	1.91
69501741--69501791	22	2.3	23	83	10	61	31	19	17	31	1.95
69506237--69506424	39	4.8	39	87	0	223	23	30	21	23	1.99
69506273--69506425	39	3.9	39	91	0	243	23	31	20	24	1.98
69518951--69518996	22	2.1	22	83	0	56	54	10	2	32	1.47
69520875--69520966	43	2.2	42	84	5	114	26	14	25	34	1.93
69520941--69521030	43	2.1	42	82	13	105	22	16	27	33	1.95
69524147--69524495	175	2.0	175	92	1	583	29	14	22	32	1.94
69526030--69526174	40	3.7	40	81	10	172	23	22	26	27	1.99
69526030--69526181	79	1.9	80	81	9	186	24	21	26	27	1.99
69533992--69534172	39	4.7	38	84	4	211	24	20	28	26	1.99
69541064--69541353	40	7.2	40	91	1	465	25	23	28	22	1.99
69549954--69550078	42	2.9	44	78	5	130	34	25	15	24	1.94
69554243--69554405	24	6.8	24	94	0	281	34	26	19	20	1.96
69558451--69558603	42	3.6	43	75	11	143	32	25	16	25	1.96
69559286--69559336	23	2.3	22	83	10	59	52	23	1	21	1.57
69561433--69561514	25	3.3	24	86	6	112	34	15	21	28	1.95
69565147--69565355	42	5.1	41	81	9	241	24	19	22	33	1.97
69565141--69565355	82	2.6	82	86	3	299	25	19	21	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69574496--69574679	40	4.7	40	87	6	243	27	27	21	24	1.99
69574496--69574678	78	2.3	81	83	9	234	26	27	21	24	1.99
69582573--69582757	40	4.7	40	87	5	243	27	27	21	24	1.99
69582573--69582756	79	2.3	81	83	7	234	26	27	21	25	1.99
69583603--69583722	61	2.0	61	98	0	231	26	26	14	32	1.94
69588997--69589036	16	2.4	17	83	4	55	10	5	40	45	1.60
69598838--69598899	28	2.2	29	88	2	90	25	29	14	30	1.95
69600642--69600771	40	3.2	40	82	4	165	23	24	28	23	2.00
69608657--69608786	40	3.2	40	82	4	165	23	24	28	23	2.00
69618303--69618522	40	5.5	41	79	10	235	25	24	26	23	2.00
69646192--69646249	19	3.4	19	65	30	58	18	17	17	46	1.84
69646181--69646300	6	19.3	6	69	19	77	20	17	14	48	1.81
69646181--69646291	31	3.5	31	91	1	159	19	18	13	48	1.80
69648415--69648621	53	3.8	54	80	4	229	19	24	18	37	1.94
69667947--69668029	41	2.0	41	92	0	139	22	31	13	32	1.92
69673537--69673612	24	3.4	24	75	14	81	44	22	6	26	1.77
69673574--69673615	19	2.2	19	95	0	75	45	19	9	26	1.80
69675195--69675246	24	2.2	24	82	0	59	32	1	9	55	1.43
69679318--69679348	16	1.9	16	93	0	53	35	12	9	41	1.76
69679515--69679656	43	3.4	41	74	7	124	33	26	15	24	1.95
69682396--69682454	28	2.1	28	90	0	91	33	27	6	32	1.83
69689221--69689400	46	3.9	46	80	11	188	25	30	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69697472--69697601	40	3.3	39	76	8	136	23	27	23	24	2.00
69697488--69697639	40	3.8	40	78	6	148	22	26	23	27	1.99
69697488--69697637	80	1.9	80	83	8	198	22	26	24	27	1.99
69705507--69705610	40	2.6	40	81	1	111	21	25	23	29	1.99
69713373--69713462	40	2.2	40	80	7	112	25	28	21	24	1.99
69713390--69713500	40	2.8	40	81	2	116	23	26	21	28	1.99
69717770--69718027	46	5.6	45	73	17	206	29	27	19	23	1.98
69717822--69717991	47	3.7	46	76	13	186	29	26	19	24	1.98
69717776--69718027	93	2.7	93	88	3	373	29	27	19	23	1.98
69719755--69719939	40	4.7	40	76	6	162	24	23	28	24	2.00
69719755--69719939	79	2.3	81	79	7	200	24	23	28	24	2.00
69723232--69723256	9	2.8	9	100	0	50	20	24	36	20	1.95
69723318--69723397	27	3.0	27	85	1	108	31	18	21	28	1.97
69723391--69723750	27	13.3	27	76	9	164	40	19	8	31	1.82
69723407--69723664	54	4.8	54	76	5	193	42	18	7	30	1.79
69723434--69723637	107	1.9	107	83	6	261	41	19	7	30	1.80
69723407--69723664	134	1.9	134	82	6	326	42	18	7	30	1.79
69723995--69724110	41	2.8	41	86	0	169	19	23	30	26	1.98
69724265--69724316	22	2.4	22	87	6	70	23	25	23	28	1.99
69724519--69724565	22	2.1	22	92	0	76	10	14	25	48	1.76
69726539--69726575	19	1.9	19	100	0	74	35	0	21	43	1.53
69726853--69726929	28	2.8	28	80	4	93	29	10	29	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69730773--69730885	40	2.7	43	80	12	135	30	26	17	25	1.98
69730772--69730909	43	3.3	41	78	13	124	29	26	17	26	1.97
69733814--69733865	15	3.2	15	73	19	50	46	0	0	53	1.00
69733827--69733863	19	1.9	19	88	0	56	51	0	0	48	1.00
69733903--69733933	16	2.0	16	93	6	55	38	0	0	61	0.96
69736071--69736121	25	2.0	26	88	3	77	41	9	7	41	1.67
69737159--69737189	16	1.9	16	100	0	62	25	32	9	32	1.88
69738437--69738511	38	2.0	38	100	0	150	17	32	5	45	1.71
69739845--69740016	93	1.8	93	91	0	281	28	27	22	22	1.99
69739838--69740012	46	3.8	45	79	10	192	29	26	21	22	1.99
69742388--69742476	30	3.0	30	80	8	101	57	15	16	10	1.65
69742388--69742467	15	5.4	15	80	7	92	58	13	17	10	1.62
69742399--69742476	15	5.2	15	78	9	79	56	15	16	11	1.67
69745389--69745560	93	1.8	93	91	0	281	27	27	22	22	1.99
69745381--69745556	46	3.8	46	78	10	196	28	27	21	22	1.99
69745432--69745575	46	3.1	46	71	18	136	29	27	20	22	1.98
69747183--69747231	22	2.2	23	82	17	59	71	2	2	24	1.07
69747182--69747232	23	2.2	22	78	21	52	72	1	1	23	1.05
69748216--69748253	20	1.9	20	88	0	58	10	31	34	23	1.89
69762482--69762583	29	3.5	29	90	0	150	27	15	33	23	1.95
69779353--69779539	27	7.0	27	81	8	179	31	11	24	33	1.90
69779354--69779539	53	3.5	52	78	6	178	31	11	23	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69779669--69779744	27	2.9	27	84	5	93	39	11	21	27	1.88
69782156--69782406	40	6.4	40	76	7	248	26	22	26	24	2.00
69782156--69782382	76	2.9	76	90	3	330	25	22	26	24	2.00
69795363--69795492	40	3.3	39	76	8	136	23	27	23	24	2.00
69795379--69795530	40	3.8	40	78	6	148	22	26	23	27	1.99
69795379--69795528	80	1.9	80	83	8	198	22	26	24	27	1.99
69807835--69808001	46	3.6	46	77	13	189	20	20	29	28	1.98
69807832--69808001	93	1.8	93	94	0	304	21	21	29	28	1.98
69809690--69809887	71	2.8	70	92	3	294	33	17	28	20	1.95
69809756--69809873	41	3.1	41	60	28	98	32	17	28	21	1.96
69809724--69809887	71	2.3	71	100	0	328	35	17	28	18	1.94
69811762--69811948	71	2.7	68	93	5	281	18	28	18	34	1.95
69811785--69811948	71	2.3	71	100	0	328	18	28	17	35	1.94
69811785--69811982	71	2.8	70	92	3	276	20	28	17	33	1.95
69816806--69816917	24	4.7	24	84	6	113	25	16	23	34	1.95
69819657--69819864	40	5.2	40	80	2	211	26	22	26	24	2.00
69822889--69822928	21	1.9	21	85	10	55	42	0	15	42	1.46
69825698--69825767	28	2.5	28	90	9	108	31	27	12	28	1.93
69832398--69832486	46	2.0	45	84	6	117	38	24	13	23	1.91
69840261--69840348	45	2.0	45	81	4	106	40	23	12	22	1.88
69842974--69843009	17	2.1	17	100	0	72	33	11	13	41	1.80
69848100--69848143	21	2.1	21	100	0	88	34	27	9	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69848106--69848151	21	2.2	21	88	0	65	36	28	10	23	1.89
69850119--69850157	17	2.2	18	86	9	53	20	0	38	41	1.53
69850167--69850199	15	2.2	15	89	10	50	15	0	0	84	0.61
69850172--69850196	13	1.9	13	100	0	50	12	0	0	88	0.53
69852870--69853036	39	4.3	39	92	0	244	32	20	25	21	1.97
69853248--69853273	2	13.0	2	100	0	52	50	0	0	50	1.00
69855036--69855086	26	2.0	26	92	0	84	31	17	13	37	1.89
69861838--69861993	68	2.2	68	78	13	158	20	27	16	35	1.94
69865929--69866084	68	2.2	68	78	13	158	20	27	16	35	1.94
69868505--69868562	29	2.0	29	100	0	116	34	13	17	34	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410