Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  18  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4541597--4541643
24
2.0
24
83
8
60
46
2
0
51
1.13
4541596--4541644
14
3.8
13
76
15
57
44
2
0
53
1.12
4541603--4541661
26
2.3
25
77
11
66
42
3
0
54
1.17
4542929--4542987
18
3.5
17
79
6
57
61
3
3
32
1.29
4542956--4543075
13
9.1
13
68
27
67
60
0
3
35
1.19
4542956--4543070
20
5.8
19
77
14
101
60
0
3
35
1.20
4543005--4543076
29
2.6
29
82
10
80
62
1
1
34
1.13
4543947--4543972
7
3.7
7
100
0
52
88
0
11
0
0.52
4548265--4548315
3
17.0
3
100
0
102
66
0
0
33
0.92
4556230--4556296
24
2.8
24
88
2
98
49
1
4
44
1.31
4556276--4556317
19
2.2
20
86
4
59
57
0
2
40
1.12
4568824--4568858
18
1.9
18
94
0
61
42
0
0
57
0.99
4576557--4576607
25
2.0
25
100
0
102
45
11
19
23
1.83
4578633--4578680
21
2.3
22
79
13
57
33
2
0
64
1.05
4586160--4586207
19
2.4
21
86
10
66
39
0
0
60
0.97
4586180--4586243
19
3.3
19
80
4
58
34
0
6
59
1.23
4586455--4586480
7
3.7
7
100
0
52
15
11
26
46
1.80
4591539--4591584
24
2.0
24
86
4
67
26
19
10
43
1.84
4595027--4595099
26
2.8
26
97
0
137
38
23
9
28
1.86
4596960--4597018
29
2.0
29
100
0
118
16
16
6
59
1.58
4606097--4606190
36
2.7
36
73
11
97
26
7
6
59
1.49
4606895--4606954
29
2.0
30
81
15
72
53
1
1
43
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4614251--4614286
19
1.9
18
88
5
54
25
2
11
61
1.43
4615985--4616118
59
2.3
59
75
10
130
41
0
14
42
1.51
4617518--4617609
42
2.2
42
81
12
102
10
27
38
23
1.88
4618318--4618500
52
3.6
50
80
9
171
28
28
16
25
1.97
4618355--4618500
52
2.7
53
84
5
179
29
27
16
26
1.97
4618370--4618517
52
2.8
52
85
3
163
29
27
18
25
1.98
4623548--4623608
30
2.0
30
100
0
122
22
19
31
26
1.98
4623631--4623758
46
2.8
46
97
0
238
18
21
30
28
1.97
4643814--4643842
9
3.2
9
100
0
58
41
10
10
37
1.73
4653795--4654035
120
2.0
120
97
0
455
26
22
21
29
1.99
4657404--4657462
28
2.1
28
87
0
82
45
3
0
50
1.18
4657405--4657462
15
4.1
15
70
18
52
44
3
0
51
1.18
4665510--4665558
12
4.1
12
83
0
62
28
10
6
55
1.57
4665504--4665555
18
2.9
18
77
11
52
25
11
5
57
1.55
4665567--4665627
6
10.2
6
76
0
50
22
6
14
55
1.62
4665588--4665647
18
3.3
18
75
9
50
23
8
18
50
1.74
4665700--4665850
48
3.2
48
93
0
250
27
13
15
42
1.86
4666155--4666183
15
1.9
15
100
0
58
13
6
37
41
1.72
4667825--4668045
43
5.2
43
93
2
360
26
9
20
42
1.83
4668024--4668083
27
2.3
26
80
5
66
26
8
13
51
1.69
4668709--4668748
21
1.9
21
89
0
62
35
35
22
7
1.82
4668759--4668812
21
2.6
21
96
0
99
25
46
9
18
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4669210--4669346
59
2.3
59
88
0
202
31
19
12
36
1.89
4669522--4669556
14
2.5
14
100
0
70
45
28
8
17
1.77
4669907--4669946
20
2.0
20
85
9
55
0
45
0
55
0.99
4672325--4672365
18
2.3
19
83
8
50
48
2
2
46
1.28
4675067--4675158
37
2.5
37
82
12
100
41
2
3
53
1.29
4675067--4675142
11
6.8
11
72
21
52
40
1
2
55
1.22
4678461--4678522
33
1.9
32
90
3
97
45
9
8
37
1.67
4692063--4692122
19
3.1
19
79
11
59
65
0
6
28
1.18
4704225--4704276
21
2.5
21
83
0
68
40
26
7
25
1.82
4705653--4705704
18
2.9
18
88
0
77
44
13
5
36
1.68
4710210--4710252
17
2.7
15
89
10
68
81
16
0
2
0.79
4719034--4719085
18
2.9
18
94
0
86
48
15
11
25
1.78
4721174--4721212
7
5.6
7
100
0
78
43
15
25
15
1.86
4723331--4723358
1
28.0
1
100
0
56
0
0
0
100
0.00
4728446--4728479
17
2.0
17
88
0
50
58
0
2
38
1.13
4729262--4729369
54
2.0
54
100
0
216
31
20
11
37
1.88
4729498--4729531
17
2.0
17
88
0
50
47
0
0
52
1.00
4729645--4729704
29
2.0
29
83
6
75
51
11
10
26
1.69
4747628--4747653
12
2.2
12
100
0
52
34
7
15
42
1.75
4748716--4748749
2
17.0
2
100
0
68
50
0
0
50
1.00
4762969--4763000
17
2.0
17
88
11
50
25
15
25
34
1.95
4774098--4774139
21
2.0
21
85
0
57
47
16
7
28
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4775833--4776004
75
2.4
73
83
8
217
33
23
11
31
1.90
4775838--4776004
35
4.6
35
86
7
192
33
23
10
31
1.89
4783336--4783501
35
4.6
35
86
8
192
33
24
10
31
1.90
4783331--4783503
75
2.4
72
83
11
221
33
23
10
31
1.90
4786939--4786968
15
2.0
15
93
0
51
50
0
10
40
1.36
4790657--4790745
18
4.9
18
72
11
65
62
3
2
31
1.23
4793177--4793215
20
2.0
20
85
10
53
56
10
7
25
1.59
4797391--4797525
41
3.3
41
86
4
182
22
33
25
19
1.97
4799099--4799324
50
4.5
50
81
8
235
24
18
26
29
1.98
4801191--4801222
16
2.0
16
100
0
64
18
12
18
50
1.78
4805428--4805490
32
1.9
33
87
3
92
36
22
11
30
1.89
4807368--4807584
40
5.4
40
86
3
296
23
22
27
26
2.00
4807813--4807854
22
1.9
22
85
9
59
33
9
14
42
1.78
4809804--4809839
17
2.1
18
89
5
56
27
8
0
63
1.23
4813667--4813695
14
2.1
14
100
0
58
31
13
0
55
1.39
4814167--4814205
20
2.0
19
95
5
69
82
0
10
7
0.86
4821486--4821528
22
2.1
20
83
12
52
44
11
6
37
1.68
4833401--4833532
29
4.6
29
91
0
201
26
15
32
25
1.95
4841304--4841433
29
4.6
29
90
3
192
26
15
33
24
1.95
4841305--4841433
56
2.3
58
89
2
190
27
15
33
24
1.95
4842946--4842988
22
2.0
22
95
0
77
46
11
4
37
1.61
4846908--4846946
20
2.0
20
85
10
53
33
2
15
48
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4847154--4847187
3
11.0
3
93
6
59
32
2
0
64
1.08
4847476--4847537
29
2.1
30
91
8
101
25
4
11
58
1.53
4850294--4850348
29
1.9
28
85
10
76
20
20
27
32
1.97
4851422--4851461
19
2.0
22
85
14
59
32
47
2
17
1.61
4851523--4851637
27
4.3
26
87
5
149
36
23
23
16
1.94
4851523--4851637
54
2.1
54
88
3
169
36
23
23
16
1.94
4853244--4853353
26
4.2
26
97
0
184
36
24
5
33
1.79
4857353--4857403
23
2.1
26
82
10
63
31
1
9
56
1.43
4857389--4857438
10
5.0
10
81
13
59
22
8
2
68
1.26
4857408--4857446
20
2.0
20
84
0
51
25
5
5
64
1.35
4864358--4864510
47
3.2
47
83
4
166
22
15
29
32
1.94
4866991--4867116
42
3.0
42
80
2
128
46
19
19
15
1.85
4867017--4867137
42
2.9
42
81
7
113
46
19
18
16
1.85
4869487--4869524
19
2.1
18
85
9
51
81
0
10
7
0.87
4871075--4871114
20
2.0
20
90
0
62
70
0
2
27
1.01
4871545--4871592
23
1.9
24
84
16
62
60
4
2
33
1.27
4873300--4873529
55
4.3
54
80
8
224
21
25
16
36
1.94
4874712--4874864
43
3.6
43
96
0
270
30
31
26
11
1.91
4874857--4874980
38
3.2
38
88
2
158
27
26
23
22
2.00
4879152--4879176
13
1.9
13
100
0
50
80
0
0
20
0.72
4882166--4882211
22
2.0
22
83
4
56
26
21
0
52
1.47
4891353--4891399
18
2.6
18
86
6
60
21
53
2
23
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4894285--4894320
19
2.0
17
89
10
54
66
5
2
25
1.27
4894279--4894348
25
2.7
28
71
24
71
64
7
4
24
1.37
4896819--4897027
85
2.5
85
94
1
357
34
9
17
38
1.82
4902975--4902999
13
1.9
13
100
0
50
48
16
0
36
1.46
4905628--4905690
26
2.4
26
100
0
126
34
12
3
49
1.57
4905628--4905704
26
3.0
26
90
1
93
36
14
2
46
1.58
4917603--4917828
101
2.2
101
100
0
452
42
19
12
26
1.86
4919160--4919212
18
2.9
19
76
15
51
52
0
1
45
1.11
4919637--4919667
3
10.3
3
100
0
62
67
0
0
32
0.91
4919663--4919693
4
7.8
4
100
0
62
74
0
0
25
0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410