Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  341  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105251876--105252038
38
4.4
38
84
11
232
22
22
16
38
1.93
105251899--105252012
31
3.5
31
86
8
138
23
20
14
41
1.89
105251899--105252038
69
2.0
69
97
0
262
23
20
15
40
1.91
105252230--105252324
24
4.0
24
85
10
124
26
24
21
28
1.99
105252230--105252323
47
2.0
49
85
12
133
26
24
21
27
1.99
105252375--105252434
20
3.0
20
90
0
102
31
20
11
36
1.88
105252477--105252524
25
1.9
25
86
0
69
25
16
25
33
1.96
105258205--105258367
38
4.4
38
85
11
241
22
22
16
38
1.93
105258228--105258341
31
3.5
31
89
8
147
23
21
14
40
1.90
105258228--105258367
69
2.0
69
98
0
271
23
21
15
39
1.92
105258559--105258651
23
4.0
23
87
9
102
26
24
21
26
1.99
105258559--105258651
24
4.0
23
85
12
118
26
24
21
26
1.99
105258559--105258651
47
2.0
48
85
10
129
26
24
21
26
1.99
105258703--105258762
20
3.0
20
87
0
93
33
20
10
36
1.86
105258805--105258852
25
1.9
25
86
0
69
25
16
25
33
1.96
105263937--105264043
52
2.1
52
94
0
187
35
18
13
32
1.89
105268497--105268559
30
2.1
30
87
0
90
57
9
3
30
1.46
105269470--105269512
22
2.1
19
87
12
59
55
0
4
39
1.20
105275208--105275250
21
2.0
21
91
8
70
18
27
13
39
1.89
105275423--105275462
21
1.9
21
94
0
71
42
5
30
22
1.75
105281002--105281074
23
3.2
23
65
18
62
24
30
15
30
1.95
105281001--105281090
45
2.0
45
93
0
153
24
31
14
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105282218--105282273
28
2.0
28
96
0
103
26
17
19
35
1.94
105288838--105289092
131
1.9
132
88
2
388
26
16
21
35
1.94
105290251--105290296
17
2.7
17
90
6
67
21
0
2
76
0.90
105295961--105296014
27
2.0
27
88
0
81
42
1
0
55
1.10
105295833--105296023
96
2.0
98
88
6
293
47
4
2
46
1.35
105295989--105296026
19
2.0
19
85
10
51
60
0
0
39
0.97
105305518--105305564
23
2.0
23
100
0
94
36
17
8
38
1.80
105312926--105312972
23
2.0
23
100
0
94
36
17
8
38
1.80
105320750--105320858
43
2.5
43
89
2
166
36
22
12
28
1.91
105322554--105322583
3
10.0
3
100
0
60
33
33
0
33
1.58
105322582--105322625
3
14.7
3
100
0
88
65
0
0
34
0.93
105323980--105324020
21
1.9
22
85
5
57
41
14
0
43
1.45
105325190--105325219
15
1.9
16
93
6
53
20
20
6
53
1.67
105334373--105334425
22
2.4
22
83
0
61
16
7
15
60
1.57
105337554--105337591
3
13.0
3
83
5
51
71
0
28
0
0.87
105337554--105337591
17
2.2
18
95
4
69
71
0
28
0
0.87
105342979--105343008
13
2.3
13
94
0
51
50
0
3
46
1.18
105351607--105351990
28
13.5
28
75
5
297
30
21
20
27
1.98
105351703--105351828
62
2.0
62
81
3
146
28
20
18
32
1.96
105351617--105351940
174
1.9
174
83
6
433
30
20
19
28
1.97
105351996--105352112
29
4.0
29
86
0
153
32
22
17
27
1.97
105352010--105352115
15
7.3
15
71
6
83
32
22
17
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105353794--105353826
6
5.5
6
92
0
57
72
0
12
15
1.12
105353787--105353826
18
2.2
18
95
0
71
72
0
12
15
1.12
105357384--105357472
45
2.0
45
95
0
160
39
13
21
25
1.90
105362805--105362897
29
3.2
29
98
0
177
30
16
27
25
1.96
105362801--105362935
58
2.3
58
82
8
161
28
15
31
25
1.96
105362901--105362966
29
2.3
29
81
0
78
22
18
34
24
1.96
105365220--105365418
68
2.9
68
87
0
263
24
22
17
36
1.95
105366228--105366261
2
17.0
2
100
0
68
50
0
0
50
1.00
105369119--105369166
25
1.9
24
87
8
69
31
0
8
60
1.26
105369121--105369166
24
1.9
24
86
8
67
32
0
8
58
1.28
105382082--105382120
17
2.2
19
86
9
55
2
28
0
69
1.02
105382466--105382504
18
2.1
19
85
4
53
51
2
0
46
1.14
105392956--105393108
43
3.6
45
75
9
140
26
19
25
28
1.99
105392958--105393116
85
1.9
84
81
7
196
25
20
26
28
1.99
105394322--105394363
19
2.3
19
83
4
50
40
0
4
54
1.21
105401177--105401226
10
5.0
10
86
13
68
70
2
8
20
1.23
105401680--105401733
15
3.7
15
80
9
67
74
0
1
24
0.92
105403808--105403846
20
1.9
20
84
5
51
23
25
20
30
1.98
105408472--105408531
10
6.0
10
84
11
79
68
1
8
21
1.25
105412280--105412347
25
2.8
24
80
10
75
17
26
23
32
1.97
105413961--105413997
20
1.9
18
89
10
56
43
0
21
35
1.53
105414551--105414726
46
3.8
46
77
12
198
20
19
29
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105414548--105414718
93
1.8
93
92
0
288
20
20
29
29
1.98
105417295--105417459
46
3.6
45
81
4
172
26
20
29
23
1.99
105420265--105420301
20
1.9
18
89
10
56
43
0
21
35
1.53
105420857--105421032
46
3.8
46
77
12
198
20
19
29
30
1.97
105420854--105421024
93
1.8
93
92
0
288
20
20
29
29
1.98
105429260--105429288
2
14.5
2
100
0
58
0
0
48
51
1.00
105431372--105431403
3
10.7
3
100
0
64
68
0
0
31
0.90
105431873--105431915
19
2.3
18
84
4
50
20
0
6
72
1.08
105433971--105434020
17
2.9
17
84
3
64
76
4
4
16
1.10
105433977--105434025
17
2.8
18
84
6
64
75
4
4
16
1.11
105433980--105434034
17
3.4
16
76
19
53
70
3
5
20
1.22
105435159--105435256
49
2.0
49
97
0
187
47
16
3
32
1.62
105452319--105452364
23
2.0
23
95
0
83
45
8
19
26
1.79
105455490--105455539
9
5.4
9
81
9
57
72
0
4
24
1.02
105455489--105455536
10
4.9
10
78
14
55
70
0
4
25
1.04
105455489--105455536
20
2.5
19
86
6
69
70
0
4
25
1.04
105457900--105457929
15
2.0
15
93
0
51
36
33
10
20
1.86
105459462--105459508
3
15.7
3
100
0
94
31
0
0
68
0.90
105461222--105461252
12
2.6
12
94
0
53
25
19
0
54
1.44
105461270--105461307
15
2.5
15
84
12
51
23
2
2
71
1.12
105462169--105462208
11
3.5
11
81
18
55
27
12
0
60
1.33
105465277--105465384
26
4.2
26
95
4
184
38
25
5
30
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105468158--105468208
25
2.0
26
84
3
68
41
7
9
41
1.67
105478591--105478621
14
2.3
14
94
5
55
70
0
0
29
0.87
105479176--105479230
20
2.8
20
75
5
60
36
3
0
60
1.15
105480020--105480093
34
2.1
35
92
7
123
33
10
2
52
1.50
105480666--105480752
21
4.3
21
68
19
76
19
10
0
70
1.16
105480666--105480757
30
3.1
30
100
0
184
19
10
0
69
1.17
105481910--105481986
27
2.9
26
77
11
93
27
16
11
44
1.83
105485920--105485991
27
2.8
25
76
12
74
18
22
23
36
1.95
105485920--105486016
52
1.9
50
81
8
115
20
21
23
34
1.97
105490972--105491007
5
6.8
5
90
9
54
80
0
16
2
0.83
105490971--105491010
11
3.6
11
90
10
64
80
0
17
2
0.83
105494681--105494728
24
2.0
24
100
0
96
45
12
8
33
1.72
105498678--105498817
27
5.2
28
86
5
157
37
22
22
17
1.94
105500437--105500546
26
4.2
26
95
2
177
36
24
4
34
1.76
105505305--105505341
2
18.5
2
100
0
74
51
0
0
48
1.00
105505305--105505363
14
4.1
14
85
12
66
49
8
0
42
1.33
105506004--105506063
24
2.5
24
100
0
120
33
0
38
28
1.57
105507489--105507600
27
4.1
27
82
7
129
16
24
22
37
1.93
105507492--105507598
54
2.0
54
87
3
153
16
24
20
38
1.93
105509285--105509319
16
2.2
16
89
0
52
45
17
0
37
1.48
105510611--105510786
94
1.9
92
83
6
230
22
29
19
28
1.98
105512905--105512934
8
3.8
8
90
0
51
43
26
26
3
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105513324--105513404
27
3.0
26
85
8
108
14
23
22
39
1.91
105517049--105517098
24
2.1
24
100
0
100
24
22
20
34
1.97
105537378--105537545
43
3.9
42
75
9
151
30
25
18
25
1.98
105546916--105547044
46
2.8
46
95
0
222
29
29
21
19
1.98
105546924--105547063
46
3.0
45
88
4
140
28
29
21
20
1.98
105554452--105554623
93
1.8
93
96
0
317
27
29
21
20
1.98
105554445--105554620
46
3.8
46
79
12
216
28
29
21
20
1.98
105557625--105557786
43
3.8
42
75
6
157
32
27
17
22
1.96
105558425--105558449
13
1.9
13
100
0
50
40
24
4
32
1.73
105559463--105559521
30
2.0
30
83
3
75
37
8
23
30
1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410