Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  400  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120973218--120973812
87
6.8
87
75
6
474
35
21
22
21
1.96
120973828--120974026
68
2.9
68
88
2
294
27
23
22
27
1.99
120974138--120974778
44
14.6
44
77
8
572
31
19
23
25
1.98
120974074--120974836
44
17.3
44
76
8
570
32
19
22
25
1.98
120974079--120974788
132
5.4
132
96
0
1226
31
19
23
25
1.98
120975171--120975212
22
1.9
22
85
9
59
23
52
9
14
1.71
120975283--120975383
22
4.4
23
76
18
95
11
1
29
56
1.46
120975308--120975354
21
2.2
21
92
3
76
6
0
27
65
1.16
120975284--120975353
23
3.2
21
82
15
81
8
1
30
60
1.35
120975276--120975355
23
3.5
23
73
10
74
7
1
28
62
1.30
120975683--120975766
3
27.3
3
73
15
66
30
3
1
64
1.18
120976003--120976033
2
16.0
2
93
6
55
48
0
0
51
1.00
120976144--120976183
21
1.9
21
89
0
62
37
0
5
57
1.21
120976142--120976214
23
3.1
23
81
13
78
32
4
4
58
1.36
120979113--120979185
33
2.2
33
92
0
128
24
6
10
57
1.57
120980627--120980658
5
6.4
5
100
0
64
18
0
0
81
0.70
120985029--120985060
5
6.4
5
100
0
64
18
0
0
81
0.70
120985111--120985139
14
2.1
14
100
0
58
48
6
0
44
1.29
120985155--120985268
61
1.9
59
85
7
160
46
16
13
23
1.82
120986214--120986321
26
4.2
26
93
0
189
37
25
6
31
1.81
120993432--120993503
35
2.0
38
89
8
114
44
8
9
37
1.68
120994747--120994797
22
2.1
22
86
13
66
43
0
0
56
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120994931--120994997
17
3.9
17
73
5
55
62
5
1
29
1.28
120998187--120998241
23
2.5
23
80
11
62
52
5
3
38
1.42
120998210--120998252
17
2.4
17
80
7
50
53
6
4
34
1.49
120998301--120998354
26
2.0
27
82
3
65
64
3
5
25
1.32
120998449--120998488
21
1.9
21
94
0
71
70
0
2
27
1.01
120998698--120998740
23
1.9
22
90
4
68
48
0
11
39
1.40
120998777--120998826
2
26.0
2
84
8
68
54
2
0
44
1.11
120998944--120998997
23
2.3
24
87
9
76
53
11
0
35
1.36
120998944--120998988
21
2.1
21
88
12
65
53
11
0
35
1.37
121000701--121001114
88
4.7
87
79
7
410
36
18
16
28
1.93
121001008--121001042
14
2.5
14
95
0
61
57
2
20
20
1.54
121000711--121001114
175
2.3
174
81
7
444
37
18
16
27
1.92
121001033--121001519
73
6.7
72
89
4
723
31
24
15
29
1.96
121001033--121001519
218
2.2
219
95
1
879
31
24
15
29
1.96
121002248--121002520
136
2.0
136
100
0
546
31
24
18
24
1.98
121002527--121002574
21
2.3
21
85
7
62
33
52
2
12
1.51
121004304--121004439
26
5.2
26
94
0
236
36
25
5
33
1.78
121017918--121017956
17
2.3
17
86
8
53
17
10
0
71
1.12
121017944--121017977
13
2.8
12
91
8
52
8
0
0
91
0.43
121018179--121018235
29
2.0
29
82
6
71
22
10
7
59
1.54
121022727--121022762
12
3.0
12
95
0
63
27
25
5
41
1.77
121030358--121030733
72
5.2
72
81
6
397
28
17
21
33
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121030371--121030675
143
2.1
144
86
5
422
28
18
21
31
1.97
121031800--121031838
17
2.3
17
86
8
53
17
10
0
71
1.12
121031800--121031861
14
4.0
16
76
21
53
14
8
0
77
0.98
121031829--121031853
7
3.6
7
100
0
50
12
0
0
88
0.53
121032071--121032127
29
2.0
29
82
6
71
22
10
7
59
1.54
121038549--121038580
12
2.7
12
100
0
64
31
15
0
53
1.43
121047927--121048008
26
3.2
25
89
6
114
35
23
6
35
1.80
121051731--121051913
91
2.0
91
100
0
366
31
27
15
25
1.95
121052177--121052229
26
2.0
27
85
7
74
24
15
22
37
1.92
121053710--121053790
25
3.2
25
94
0
144
37
22
6
34
1.79
121054165--121054218
23
2.3
24
87
9
76
53
11
0
35
1.36
121054165--121054209
21
2.1
21
88
12
65
53
11
0
35
1.37
121056717--121056787
25
2.8
24
73
14
63
29
8
1
60
1.35
121056832--121056859
6
4.7
6
100
0
56
32
0
0
67
0.91
121056860--121056928
29
2.5
27
83
4
84
30
2
2
63
1.23
121056990--121057048
28
2.1
28
81
9
68
35
3
3
57
1.32
121057002--121057071
26
2.6
26
84
10
88
32
1
5
60
1.29
121058281--121058322
18
2.5
17
77
11
50
45
23
4
26
1.73
121065325--121065368
2
21.5
2
86
4
61
45
2
4
47
1.35
121067853--121067941
46
1.9
46
97
0
169
25
19
28
26
1.99
121068428--121068475
22
2.2
22
85
7
62
27
6
4
62
1.38
121076606--121076660
6
9.3
6
75
18
53
12
1
0
85
0.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121076606--121076661
5
10.8
5
81
12
51
14
1
0
83
0.72
121076616--121076660
11
4.1
11
83
11
56
11
2
0
86
0.65
121076606--121076661
16
3.6
16
79
18
64
14
1
0
83
0.72
121076766--121076857
41
2.2
41
84
7
114
32
34
13
19
1.90
121077612--121077841
117
2.0
118
92
0
381
22
17
30
28
1.97
121077967--121078009
14
3.1
14
86
3
52
86
2
9
2
0.76
121081190--121081340
42
3.6
40
78
11
144
17
21
18
42
1.89
121081200--121081261
20
3.0
21
71
15
58
12
17
20
48
1.80
121081275--121081336
21
3.0
21
74
9
63
16
25
17
40
1.90
121081796--121081834
2
19.5
2
100
0
78
48
0
0
51
1.00
121083510--121083572
19
3.3
19
68
25
51
60
6
7
25
1.48
121083646--121083688
22
2.0
22
86
8
63
58
4
6
30
1.45
121083880--121083954
19
4.3
18
76
10
75
60
1
4
34
1.24
121089524--121089557
17
2.0
17
88
0
50
32
8
11
47
1.71
121093558--121093595
12
3.1
12
82
17
51
73
15
5
5
1.19
121095000--121095037
19
2.0
19
85
10
51
26
15
5
52
1.64
121095037--121095069
13
2.5
13
90
9
50
24
6
6
63
1.40
121095143--121095337
3
66.3
3
65
8
87
29
8
3
58
1.44
121095222--121095334
20
5.6
20
72
13
79
26
8
5
59
1.49
121095277--121095340
23
2.8
23
83
4
85
26
6
4
62
1.39
121095489--121095661
3
57.7
3
65
18
67
29
8
2
60
1.38
121098035--121098119
43
2.0
42
95
2
152
43
10
11
34
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121102727--121102769
21
2.0
21
100
0
86
13
32
9
44
1.76
121104155--121104197
3
14.3
3
85
0
59
62
2
2
32
1.20
121104146--121104176
12
2.6
12
94
0
53
61
3
6
29
1.37
121104146--121104349
18
10.7
18
66
18
65
56
3
10
28
1.50
121104146--121104222
24
3.2
24
79
12
79
61
5
3
29
1.36
121104314--121104349
3
12.0
3
93
0
63
66
2
0
30
1.06
121105709--121105859
77
2.0
77
92
2
250
34
14
19
31
1.92
121107227--121107308
21
3.8
21
91
3
119
32
26
25
14
1.95
121107213--121107320
21
5.0
22
84
5
114
37
25
22
15
1.93
121108756--121108791
15
2.3
17
81
18
51
0
30
0
69
0.89
121112136--121112205
3
22.7
3
72
16
54
65
2
4
27
1.25
121112133--121112163
15
2.1
15
100
0
62
67
6
0
25
1.14
121112144--121112214
38
1.9
37
86
8
101
63
4
5
26
1.35
121112338--121112378
18
2.2
20
82
8
50
70
12
4
12
1.31
121112524--121112556
16
2.0
17
88
5
50
81
6
0
12
0.85
121112537--121112573
16
2.2
18
85
9
51
75
5
2
16
1.10
121116528--121116561
17
2.1
17
88
5
52
44
8
5
41
1.60
121116552--121116661
56
2.0
56
88
0
166
42
10
8
39
1.68
121118410--121118479
35
2.0
35
100
0
140
31
28
8
31
1.87
121119793--121119837
22
2.0
22
82
0
54
68
2
17
11
1.29
121120914--121120957
2
22.0
2
90
0
70
50
4
0
45
1.22
121121044--121121108
34
1.9
33
84
3
85
52
1
6
40
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121121626--121121690
25
2.6
25
85
2
69
3
4
27
64
1.28
121121644--121121712
25
2.8
24
89
6
102
4
2
23
69
1.20
121122623--121122784
88
1.8
87
80
5
191
35
18
17
28
1.94
121122694--121122728
14
2.6
14
90
4
54
51
5
14
28
1.65
121122375--121123206
248
3.4
241
82
6
853
35
18
17
29
1.94
121122748--121122942
77
2.5
77
86
5
259
32
17
17
32
1.94
121122748--121122963
79
2.7
78
85
6
267
34
16
18
31
1.93
121122817--121123128
170
1.9
167
85
6
443
32
19
19
28
1.96
121122957--121123307
78
4.7
75
87
4
449
32
19
16
30
1.94
121122957--121123310
153
2.4
148
85
5
453
32
19
16
31
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410