Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 124041150 
Parameters: 2 7 7 80 10 50 1000
Length:  124041150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   

This is table  337  of  410  ( 49152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104341853--104341932
25
3.2
25
62
13
65
36
8
5
50
1.55
104347433--104347608
46
3.8
46
79
12
216
20
21
29
28
1.98
104347430--104347601
93
1.8
93
96
0
317
20
21
29
27
1.98
104349672--104349806
40
3.4
40
96
0
252
21
20
29
28
1.98
104349672--104349830
80
2.0
80
88
0
237
23
21
27
27
1.99
104352432--104352488
19
3.1
17
80
12
60
40
0
3
56
1.17
104352825--104352894
30
2.5
26
75
20
70
65
5
7
21
1.38
104352667--104353003
154
2.2
150
88
4
491
59
8
5
27
1.49
104352858--104353124
121
2.2
121
89
6
412
59
8
6
25
1.52
104353094--104353174
30
3.1
25
73
16
74
70
3
2
23
1.16
104352982--104353608
146
4.2
144
88
5
703
60
7
4
27
1.45
104352708--104353575
275
3.1
274
83
9
1049
59
7
5
26
1.48
104353362--104353415
15
3.7
15
75
5
56
61
3
1
33
1.25
104353544--104353611
30
2.5
25
75
20
73
69
4
2
23
1.21
104353586--104353621
17
2.1
18
89
5
56
66
13
2
16
1.36
104353355--104354126
388
2.0
387
98
0
1510
53
7
5
33
1.52
104353750--104353792
14
2.9
15
72
6
52
55
4
2
37
1.33
104353932--104353999
30
2.5
25
75
20
73
69
4
2
23
1.21
104353974--104354008
16
2.1
17
89
10
54
68
11
2
17
1.31
104361219--104361297
33
2.4
33
80
0
95
18
13
43
24
1.87
104363354--104363974
154
4.1
152
88
5
923
27
6
7
59
1.48
104363851--104364071
118
1.9
119
93
0
381
27
6
8
57
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104363697--104364276
272
2.1
274
91
2
936
26
6
7
58
1.50
104363969--104364262
153
1.9
151
92
2
491
25
6
8
59
1.51
104364719--104364774
27
2.1
27
83
12
71
50
8
0
41
1.34
104364805--104364846
12
3.6
12
83
6
50
0
28
0
71
0.86
104365276--104365326
26
2.0
26
100
0
102
21
15
3
58
1.53
104365120--104365452
181
1.8
181
85
3
465
29
15
12
42
1.83
104368530--104368603
3
24.7
3
100
0
148
67
0
0
32
0.91
104370463--104370506
18
2.5
17
82
13
54
34
6
2
56
1.38
104370463--104370521
19
3.2
19
81
11
52
33
6
1
57
1.35
104371866--104372011
26
5.6
25
78
6
130
58
4
4
32
1.40
104371874--104372014
52
2.7
51
82
6
185
58
4
5
31
1.43
104373197--104373224
14
2.0
14
100
0
56
28
0
7
64
1.20
104377929--104378069
60
2.4
59
83
9
171
25
18
26
29
1.98
104380768--104380814
7
6.7
7
100
0
94
57
0
0
42
0.98
104380768--104380824
21
2.7
21
89
5
62
57
1
1
38
1.19
104380910--104380939
12
2.6
11
90
10
51
73
0
0
26
0.84
104380912--104380936
4
6.2
4
100
0
50
76
0
0
24
0.80
104381100--104381149
12
3.9
13
76
12
59
62
0
4
34
1.14
104381195--104381243
20
2.5
20
86
6
64
63
2
2
32
1.17
104381324--104381374
19
2.7
19
84
3
68
68
1
3
25
1.17
104382991--104383290
83
3.7
83
80
12
261
27
21
17
33
1.96
104383114--104383260
73
2.0
73
98
0
285
24
20
19
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104383216--104383923
119
5.9
119
94
0
1200
30
20
16
32
1.95
104384734--104384785
8
6.6
8
82
10
54
7
7
0
84
0.77
104384734--104384785
15
3.5
15
84
7
61
7
7
0
84
0.77
104395658--104395683
7
3.7
7
100
0
52
57
0
0
42
0.98
104395928--104395958
2
15.5
2
100
0
62
51
0
0
48
1.00
104396065--104396129
21
3.2
20
82
10
78
61
0
3
35
1.12
104396061--104396178
18
6.5
18
70
18
84
61
1
4
33
1.26
104396210--104396260
19
2.7
19
84
3
68
68
1
3
25
1.17
104401485--104401530
18
2.6
18
96
0
83
34
17
8
39
1.80
104401771--104401828
23
2.5
23
100
0
116
34
18
13
32
1.91
104404560--104404597
19
2.0
19
94
0
67
50
15
7
26
1.72
104405907--104406019
9
12.0
9
65
22
54
30
5
1
61
1.28
104405907--104406065
10
16.2
10
65
22
54
31
4
1
62
1.26
104405912--104405982
19
3.6
19
71
17
56
29
5
2
61
1.33
104405907--104405991
38
2.2
37
76
10
91
31
4
2
61
1.29
104405950--104406019
28
2.4
29
84
11
83
31
4
1
62
1.23
104405950--104406028
28
2.8
27
78
7
77
31
5
1
62
1.25
104406202--104406235
17
2.0
17
88
0
50
82
2
14
0
0.79
104406314--104406360
23
2.0
24
83
4
60
51
6
2
40
1.39
104407915--104407953
17
2.4
16
83
8
51
58
0
5
35
1.20
104415348--104415387
18
2.2
19
90
4
64
50
5
2
42
1.37
104432810--104432914
28
3.8
28
86
5
131
32
30
13
23
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104433499--104433553
27
2.0
28
86
10
78
43
21
0
34
1.53
104435790--104435826
18
2.1
18
94
0
65
51
10
2
35
1.51
104438600--104438626
2
13.5
2
100
0
54
51
0
0
48
1.00
104445933--104446002
27
2.6
27
93
2
113
30
25
14
30
1.95
104446011--104446117
42
2.5
42
98
0
205
22
33
14
29
1.93
104451628--104451665
18
2.1
18
100
0
76
34
39
0
26
1.57
104459507--104459658
67
2.2
68
79
10
168
32
17
28
21
1.95
104460093--104460198
28
3.8
28
78
9
101
29
19
27
23
1.98
104460010--104460167
54
2.9
55
82
11
216
32
14
27
25
1.95
104460088--104460198
56
2.0
56
82
3
134
29
18
27
23
1.98
104464313--104464464
67
2.2
68
80
10
177
34
17
26
21
1.95
104464815--104464969
28
5.6
27
71
11
118
30
14
29
25
1.95
104464899--104464989
28
3.3
27
80
6
92
29
18
27
24
1.98
104464816--104464976
54
2.9
55
79
8
202
31
16
27
24
1.96
104464894--104465004
56
2.0
56
80
3
125
31
18
27
22
1.97
104467822--104467913
42
2.2
42
86
3
123
40
21
10
27
1.87
104468053--104468213
23
7.0
23
90
4
261
29
21
22
26
1.99
104468051--104468213
47
3.5
47
93
1
276
28
22
22
26
1.99
104468053--104468219
70
2.4
70
91
3
266
28
20
22
28
1.99
104468276--104468332
9
5.9
9
73
15
51
35
21
8
35
1.84
104468264--104468334
20
3.5
20
94
0
124
32
21
11
35
1.89
104468269--104468323
11
5.4
11
70
16
55
30
20
12
36
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104469574--104469638
27
2.4
27
84
5
87
21
23
20
35
1.96
104469780--104469885
27
3.9
27
81
3
133
31
8
21
38
1.83
104469691--104469921
27
8.5
27
76
8
128
33
10
19
36
1.86
104469754--104469894
54
2.6
52
80
6
149
29
9
22
38
1.85
104469751--104469905
81
1.9
81
80
7
181
31
9
21
37
1.86
104469872--104470103
27
8.6
27
86
1
232
40
7
22
28
1.82
104470106--104470204
27
3.7
26
78
8
101
30
10
20
39
1.85
104470087--104470209
54
2.3
54
77
8
135
30
9
21
38
1.86
104470115--104470219
27
3.9
27
75
9
72
34
9
18
38
1.83
104473052--104473144
43
2.2
42
84
5
116
40
21
10
26
1.86
104473286--104473446
23
7.0
23
89
4
252
28
21
22
26
1.99
104473284--104473446
47
3.5
47
93
1
267
28
22
22
26
1.99
104473508--104473564
9
5.9
9
73
15
51
35
21
8
35
1.84
104473496--104473566
20
3.5
20
94
0
124
32
21
11
35
1.89
104473501--104473555
11
5.4
11
70
16
55
30
20
12
36
1.90
104474806--104474870
27
2.4
27
84
5
87
20
24
20
35
1.96
104475012--104475117
27
3.9
27
80
3
124
31
7
21
39
1.81
104474923--104475153
27
8.5
27
76
8
119
33
9
19
36
1.85
104474986--104475126
54
2.6
52
78
6
140
29
8
22
39
1.84
104475104--104475315
27
7.9
27
87
2
246
41
8
23
26
1.84
104475292--104475415
54
2.3
54
79
6
144
31
8
20
38
1.84
104475292--104475410
27
4.4
27
78
5
125
30
9
21
39
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104475321--104475425
27
3.9
27
77
7
72
34
8
18
39
1.81
104476830--104476872
22
1.9
23
90
4
70
34
18
37
9
1.83
104481838--104481885
25
1.9
25
82
0
60
35
20
14
29
1.93
104481924--104481980
9
5.9
9
73
15
51
35
8
21
35
1.84
104481922--104481992
20
3.5
20
94
0
124
35
11
21
32
1.89
104481933--104481987
11
5.4
11
70
16
55
36
12
20
30
1.90
104482037--104482203
24
7.0
24
88
4
232
28
22
21
28
1.99
104482037--104482203
47
3.5
47
93
3
264
28
22
21
28
1.99
104486705--104486770
6
10.8
6
75
15
64
50
16
15
18
1.79
104486722--104486791
31
2.3
31
94
0
122
50
14
15
20
1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410