Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  116  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30709911--30709938
12
2.3
12
100
0
56
21
7
10
60
1.53
30714263--30714320
6
9.5
6
81
3
71
13
1
6
77
1.05
30714251--30714302
19
2.9
18
83
13
72
13
1
5
78
1.01
30720591--30720822
116
2.0
116
99
0
455
43
16
17
22
1.88
30721377--30721405
1
29.0
1
100
0
58
100
0
0
0
0.00
30730975--30731390
47
8.7
48
90
3
592
33
7
29
29
1.85
30730975--30731390
100
4.3
96
89
4
608
33
7
29
29
1.85
30749654--30749686
13
2.5
14
90
9
52
18
15
3
63
1.43
30749700--30749798
9
11.3
9
70
21
68
20
4
3
72
1.14
30749721--30749745
13
1.9
13
100
0
50
16
8
0
76
1.02
30749749--30749791
17
2.7
16
85
7
52
16
2
2
79
0.95
30749703--30749788
21
3.8
22
70
25
63
18
4
2
74
1.10
30749808--30749875
23
3.0
22
77
14
84
42
0
2
54
1.15
30749991--30750054
21
2.9
21
77
17
58
35
0
3
60
1.12
30750015--30750047
14
2.3
15
94
5
59
42
0
0
57
0.98
30750141--30750180
18
2.3
18
87
8
57
55
0
7
37
1.29
30750191--30750245
27
2.0
27
82
6
67
60
0
1
38
1.08
30751191--30751249
19
3.1
18
76
11
55
49
0
3
47
1.18
30751143--30751285
71
2.0
71
90
1
225
51
2
2
43
1.28
30751452--30751491
20
2.0
20
95
0
71
57
5
5
32
1.42
30752863--30752905
20
2.1
20
83
12
52
37
6
4
51
1.50
30755047--30755094
24
2.0
24
100
0
96
25
12
12
50
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30755156--30755247
33
2.8
33
82
8
125
32
25
10
31
1.90
30755158--30755271
33
3.5
33
82
7
124
32
24
11
31
1.91
30757140--30757242
30
3.4
30
80
5
100
25
22
22
30
1.99
30758518--30758558
21
1.9
22
90
5
66
53
0
0
46
1.00
30758567--30758621
12
4.0
13
75
25
51
49
1
1
47
1.23
30758693--30758734
15
2.9
15
89
3
59
59
2
0
38
1.10
30758714--30758756
21
2.0
22
86
13
63
62
2
0
34
1.08
30758745--30758770
13
2.0
13
100
0
52
53
7
0
38
1.30
30758832--30758900
21
3.6
21
64
28
62
59
1
0
39
1.06
30758602--30758903
119
2.6
115
75
16
293
55
3
2
39
1.29
30758834--30758902
36
1.9
36
94
5
122
60
1
0
37
1.06
30758869--30758913
23
1.9
23
82
13
56
60
2
0
37
1.09
30758936--30758981
23
2.0
23
86
0
65
73
4
2
19
1.10
30758951--30759032
9
9.2
9
70
15
55
73
2
7
17
1.17
30759922--30759955
10
3.4
10
95
0
59
41
0
0
58
0.98
30759922--30759959
10
3.8
10
96
0
58
44
0
0
55
0.99
30759982--30760038
27
2.1
28
83
3
71
33
3
3
59
1.31
30760066--30760138
22
3.4
22
69
27
66
57
1
1
39
1.16
30760073--30760138
18
3.2
20
69
28
57
57
1
1
39
1.17
30760109--30760248
70
2.0
71
91
1
228
42
2
3
50
1.34
30760234--30760266
17
1.9
17
93
0
57
42
0
0
57
0.98
30760120--30760280
70
2.3
68
86
4
207
40
1
4
52
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30760322--30760419
43
2.4
40
84
6
117
50
1
1
47
1.14
30760377--30760415
19
2.0
20
85
5
53
38
2
0
58
1.12
30767466--30767504
20
2.0
20
84
0
51
46
7
2
43
1.46
30769479--30769503
11
2.3
11
100
0
50
72
0
0
28
0.86
30771761--30771808
3
15.7
3
95
4
87
31
2
0
66
1.03
30772775--30772813
20
2.0
20
85
10
53
48
7
2
41
1.45
30773742--30773774
8
4.1
8
100
0
66
87
0
0
12
0.53
30775307--30775350
20
2.3
19
84
7
61
20
0
2
77
0.88
30785820--30785859
21
1.9
21
90
10
64
50
20
2
27
1.61
30785937--30785970
17
1.9
18
88
5
52
44
29
0
26
1.55
30786048--30786082
2
17.5
2
93
0
61
48
0
2
48
1.16
30787704--30787735
8
4.0
8
100
0
64
62
0
0
37
0.95
30788732--30788879
72
2.1
72
98
0
287
26
14
11
47
1.77
30796966--30797645
48
14.3
48
91
6
1066
36
6
26
30
1.81
30796973--30797645
189
3.6
190
95
3
1198
35
6
26
30
1.82
30796966--30797645
143
4.8
142
92
5
1110
36
6
26
30
1.81
30803581--30803717
45
3.1
45
82
7
156
27
27
21
24
1.99
30804029--30804260
43
5.4
43
91
3
337
29
32
23
14
1.94
30806455--30806524
27
2.5
28
88
2
106
31
25
14
28
1.95
30814531--30814600
27
2.5
28
88
2
106
31
25
14
28
1.95
30821215--30821258
21
2.1
21
100
0
88
22
4
31
40
1.74
30821220--30821266
21
2.2
21
85
7
60
29
4
31
34
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30823445--30823607
40
4.1
40
78
3
168
25
27
22
24
2.00
30823432--30823607
79
2.2
80
81
4
205
25
26
22
25
2.00
30828482--30828653
93
1.8
93
96
0
317
27
30
22
20
1.98
30828474--30828649
46
3.8
46
81
10
232
28
29
21
20
1.98
30831011--30831099
30
3.0
30
80
8
101
57
15
16
10
1.65
30831011--30831090
15
5.4
15
80
7
92
58
13
17
10
1.62
30831022--30831099
15
5.2
15
78
9
79
56
15
16
11
1.67
30834046--30834216
93
1.8
93
96
0
315
27
29
22
20
1.98
30834038--30834218
46
3.9
46
81
9
233
27
29
21
20
1.98
30837535--30837613
31
2.5
31
95
0
140
29
25
16
29
1.97
30837637--30837728
42
2.2
42
90
0
139
35
20
14
29
1.92
30837873--30838020
25
5.8
26
92
0
230
27
23
23
25
2.00
30837873--30838020
52
2.9
51
93
2
253
27
23
23
25
2.00
30838822--30838901
27
3.0
27
90
3
117
20
26
21
32
1.97
30838944--30839444
27
18.7
27
75
8
173
33
9
19
37
1.84
30839028--30839297
54
5.0
53
74
6
202
30
8
19
40
1.82
30839054--30839283
81
2.9
79
84
3
271
30
9
18
41
1.82
30842310--30842383
30
2.5
30
81
0
85
25
35
22
16
1.95
30852753--30852783
2
15.5
2
100
0
62
48
0
0
51
1.00
30855050--30855504
150
3.0
149
90
2
716
30
21
13
34
1.92
30860584--30860641
26
2.2
26
75
6
64
65
5
0
29
1.14
30861465--30861498
16
2.1
16
88
0
50
55
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30861927--30861968
13
3.2
13
79
0
57
38
7
21
33
1.81
30863802--30863862
30
2.0
30
93
0
104
29
31
3
36
1.74
30865620--30865654
18
1.9
18
94
0
61
31
25
0
42
1.55
30866092--30866136
24
1.9
22
86
13
63
40
0
2
57
1.11
30869194--30869587
126
3.1
126
88
3
539
30
15
16
36
1.90
30869652--30869758
34
3.2
33
75
6
110
46
14
0
39
1.44
30869802--30869880
42
1.9
42
86
2
115
45
25
1
27
1.61
30870618--30870654
16
2.4
15
90
4
56
81
8
0
10
0.89
30874709--30874797
45
2.0
45
84
0
115
26
19
24
29
1.98
30874702--30874798
15
6.5
15
73
0
77
26
19
23
29
1.98
30874906--30874972
27
2.5
26
88
7
98
17
16
31
34
1.93
30877388--30877504
41
2.8
43
78
8
132
30
25
19
23
1.98
30878799--30878861
26
2.4
26
86
0
90
17
17
39
25
1.91
30883734--30883778
23
2.0
23
82
8
56
37
8
13
40
1.76
30884786--30884831
20
2.3
20
88
3
67
36
0
0
63
0.95
30885359--30885453
9
10.2
9
67
15
50
62
3
1
33
1.18
30885359--30885405
19
2.5
19
86
3
60
70
2
0
27
0.99
30885392--30885452
9
6.6
9
78
17
54
55
3
1
39
1.26
30885400--30885453
28
1.9
28
81
7
65
57
3
1
37
1.27
30885662--30885744
38
2.1
38
82
4
94
33
2
3
60
1.27
30885750--30885792
21
2.0
21
86
4
59
27
0
2
69
1.00
30885750--30885792
11
4.0
11
87
6
52
27
0
2
69
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30885889--30885920
15
2.0
17
88
11
50
28
3
6
62
1.34
30887317--30887346
16
1.9
15
93
6
51
73
0
0
26
0.84
30888801--30888826
13
2.0
13
100
0
52
15
0
0
84
0.62
30895087--30895246
86
1.9
85
83
8
209
30
27
18
23
1.98
30902535--30902689
43
3.6
42
79
9
163
31
25
18
24
1.98
30905639--30905739
45
2.3
45
85
1
132
31
18
18
30
1.96
30908179--30908445
44
5.8
44
68
17
146
34
16
18
30
1.93
30909608--30909636
9
3.2
9
100
0
58
10
0
0
89
0.48
30911282--30911325
11
3.6
11
78
21
52
34
2
0
63
1.07
30911484--30911597
58
2.0
58
100
0
228
47
7
6
39
1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427