genome.fa.s11.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  159  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43914867--43914904	20	1.9	20	88	0	58	28	2	34	34	1.71
43914866--43914910	20	2.3	19	81	11	54	28	2	35	33	1.70
43915497--43915530	15	2.3	15	89	0	50	11	2	41	44	1.56
43919600--43919669	27	2.6	27	95	2	122	30	27	14	28	1.95
43927429--43927498	27	2.6	27	95	2	122	30	27	14	28	1.95
43932921--43933096	46	3.8	46	77	4	192	21	19	29	29	1.98
43944928--43944966	21	1.9	20	84	5	51	56	2	5	35	1.35
43958155--43958214	31	1.9	31	82	0	75	48	11	6	33	1.66
43959796--43959835	21	1.9	21	84	0	53	25	2	7	65	1.32
43959971--43959996	11	2.4	11	100	0	52	15	0	0	84	0.62
43966193--43966226	7	4.9	7	100	0	68	55	0	0	44	0.99
43972456--43972624	43	4.0	43	78	6	155	34	22	13	30	1.92
43974158--43974192	2	17.5	2	100	0	70	51	0	0	48	1.00
43973971--43974399	220	1.9	222	97	0	808	34	8	16	39	1.79
43974563--43974654	37	2.5	37	85	0	121	25	15	19	40	1.90
43977617--43977675	31	1.9	30	83	10	75	55	1	1	40	1.20
43978761--43979359	47	12.7	47	96	0	1027	28	30	8	32	1.86
43978811--43978889	25	3.3	25	66	16	76	31	29	5	34	1.79
43982334--43982373	21	1.9	21	94	0	71	32	10	7	50	1.64
43991494--43991677	40	4.6	40	82	4	174	28	22	26	23	1.99
43999610--43999793	40	4.6	40	82	4	174	28	22	26	23	1.99
44004872--44004970	28	3.5	28	81	9	112	29	25	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44012183--44012328	40	3.7	40	84	0	175	24	27	21	26	2.00
44012215--44012366	40	3.8	40	84	5	164	23	25	22	28	1.99
44020884--44020981	28	3.5	28	84	4	108	29	16	24	29	1.96
44023853--44023879	2	13.5	2	100	0	54	51	0	0	48	1.00
44023969--44024041	29	2.5	29	100	0	146	27	28	15	28	1.96
44031811--44031835	2	12.5	2	100	0	50	52	0	0	48	1.00
44031926--44031998	29	2.5	29	100	0	146	27	28	15	28	1.96
44034930--44035148	110	2.0	110	99	0	429	25	7	21	45	1.77
44040893--44041018	42	3.0	43	75	11	123	31	27	18	22	1.97
44047134--44047247	20	5.7	20	73	0	84	21	19	19	40	1.92
44047147--44047300	40	3.8	40	75	1	121	20	20	20	38	1.93
44047152--44047300	80	1.9	80	85	0	208	20	20	19	38	1.93
44048880--44049075	42	4.6	42	84	5	243	28	15	27	29	1.96
44049658--44049714	29	2.0	29	96	0	105	49	10	7	33	1.64
44049678--44049720	23	1.9	23	85	4	61	46	9	9	34	1.68
44056029--44056068	19	2.2	18	86	4	53	50	0	10	40	1.36
44058462--44058509	25	1.9	25	86	0	69	33	25	16	25	1.96
44058553--44058609	20	2.8	20	97	0	105	35	12	19	33	1.89
44058557--44058609	11	5.2	11	69	17	51	35	13	18	32	1.90
44058663--44058759	23	4.1	23	88	8	151	28	21	20	28	1.98
44058662--44058780	48	2.5	47	86	9	161	28	21	21	27	1.99
44058662--44058780	23	5.0	23	83	7	105	28	21	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44060996--44061039	19	2.4	19	85	7	56	50	0	9	40	1.34
44063440--44063496	20	2.8	20	97	0	105	35	12	19	33	1.89
44063444--44063496	11	5.2	11	69	17	51	35	13	18	32	1.90
44063549--44063690	23	5.9	24	88	7	209	28	21	21	27	1.99
44063549--44063690	48	3.0	48	88	7	209	28	21	21	27	1.99
44063549--44063690	72	2.0	72	87	8	209	28	21	21	27	1.99
44072749--44072789	15	2.8	15	89	10	59	78	0	19	2	0.87
44072956--44073005	26	1.9	26	87	0	73	56	14	16	14	1.69
44080773--44080873	28	3.5	28	86	6	114	29	13	26	29	1.94
44083657--44083712	27	2.1	26	90	9	87	39	17	8	33	1.81
44086826--44086864	20	2.0	20	85	10	53	2	12	2	82	0.89
44086823--44086869	14	3.3	14	81	3	58	2	17	2	78	0.94
44092589--44092644	24	2.4	24	90	3	87	14	28	26	30	1.95
44095621--44095719	40	2.5	40	85	5	119	25	25	25	24	2.00
44095610--44095719	41	2.7	41	83	4	134	24	25	26	23	2.00
44095611--44095802	79	2.4	80	79	5	192	27	23	25	23	2.00
44098907--44098950	22	2.0	22	95	0	79	59	6	11	22	1.55
44105628--44105661	16	2.1	17	94	5	61	20	0	5	73	1.04
44106502--44106541	16	2.4	17	84	15	57	22	17	0	60	1.37
44106749--44106926	58	3.1	58	98	0	338	37	1	8	52	1.40
44108586--44108610	9	2.8	9	100	0	50	20	0	12	68	1.21
44111447--44111639	40	4.8	39	76	9	140	22	26	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44111447--44111639	80	2.4	80	82	2	217	22	26	24	26	2.00
44111489--44111640	40	3.8	39	82	4	160	24	26	23	25	2.00
44119311--44119383	29	2.5	29	93	0	101	26	31	16	26	1.96
44122767--44122919	40	3.8	40	80	5	173	24	26	23	24	2.00
44122767--44122918	81	1.9	81	83	5	200	24	26	23	25	2.00
44127881--44128088	40	5.2	40	90	1	303	23	21	28	26	1.99
44131403--44131564	6	26.3	6	70	16	91	51	14	14	19	1.76
44131412--44131510	43	2.3	43	83	0	117	53	14	15	17	1.73
44131472--44131561	25	3.6	25	84	0	117	46	14	17	21	1.83
44131463--44131542	31	2.6	31	78	9	74	47	13	16	22	1.81
44131683--44131742	27	2.3	26	85	2	75	35	20	23	21	1.96
44132081--44132247	27	6.2	26	81	3	163	23	17	17	40	1.91
44132081--44132237	54	2.9	54	83	2	183	24	18	17	39	1.92
44132081--44132247	81	2.1	80	82	5	201	23	17	17	40	1.91
44132295--44132722	27	15.9	27	84	3	130	31	8	20	39	1.83
44132349--44132731	27	14.2	27	87	0	498	30	8	20	39	1.83
44134526--44134637	20	5.7	19	72	17	70	71	0	23	5	1.06
44134582--44134637	14	4.3	12	77	22	51	75	0	19	5	1.00
44134590--44134637	19	2.5	20	90	10	73	77	0	20	2	0.88
44134544--44134640	33	3.1	32	77	14	87	72	0	22	5	1.05
44139949--44140022	36	2.1	36	100	0	148	28	8	21	41	1.81
44140530--44140605	38	2.0	38	97	0	143	64	0	7	27	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44140545--44140606	21	3.1	21	68	25	62	67	0	8	24	1.17
44140531--44140593	17	3.5	17	71	24	58	63	0	7	28	1.22
44141730--44141800	35	2.0	35	100	0	142	33	21	5	39	1.77
44144480--44144517	20	1.9	20	88	0	58	34	2	10	52	1.50
44146143--44146211	28	2.5	28	95	2	122	43	27	10	18	1.82
44147867--44147922	24	2.4	24	81	3	69	30	23	28	17	1.97
44163409--44163485	25	3.2	24	76	10	68	27	20	20	31	1.98
44165428--44165578	40	3.8	40	80	6	164	26	23	27	23	2.00
44165465--44165594	40	3.2	40	82	2	163	23	23	27	25	2.00
44173129--44173279	40	3.8	40	80	6	164	26	23	27	23	2.00
44173166--44173295	40	3.2	40	82	2	163	23	23	27	25	2.00
44181165--44181315	40	3.8	39	80	6	153	27	23	27	22	1.99
44181202--44181331	40	3.3	39	80	4	161	24	23	27	24	2.00
44183280--44183311	16	2.0	16	93	0	55	50	34	6	9	1.60
44198337--44198415	25	3.3	25	66	16	67	31	30	5	32	1.79
44198287--44198852	49	11.8	49	91	3	855	29	30	8	31	1.87
44198331--44198852	192	2.7	192	94	1	900	30	30	8	31	1.87
44198308--44198874	143	4.0	140	81	9	553	31	29	8	30	1.87
44198287--44198852	241	2.3	237	91	2	740	29	30	8	31	1.87
44202329--44202560	40	5.8	40	91	1	349	25	27	20	26	1.99
44204679--44205192	49	10.7	49	91	3	751	29	30	8	31	1.87
44212080--44212158	29	2.7	29	92	0	131	25	15	31	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44214371--44214407	17	2.2	17	95	0	65	37	8	8	45	1.63
44216056--44216239	67	2.8	64	77	8	194	28	16	30	23	1.97
44221037--44221207	79	2.2	79	83	6	213	24	26	21	26	1.99
44221070--44221254	40	4.7	39	80	9	196	24	27	23	24	2.00
44223753--44224006	68	3.9	64	77	11	178	28	16	29	25	1.97
44223822--44224006	67	2.9	64	77	8	187	28	16	30	24	1.97
44225131--44225322	47	4.1	47	92	0	285	25	29	12	32	1.92
44225247--44225321	23	3.2	23	62	23	57	28	32	10	29	1.90
44230887--44230934	25	1.9	25	86	0	69	33	25	16	25	1.96
44230978--44231036	20	3.0	20	94	0	100	35	11	22	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427