Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  180  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49770715--49770785
24
3.0
24
74
0
70
14
28
0
57
1.37
49770736--49770785
18
2.8
18
84
0
64
14
26
0
60
1.34
49771843--49771875
12
2.8
12
100
0
66
12
0
6
81
0.85
49772097--49772144
15
3.3
15
73
5
53
29
0
27
43
1.55
49772091--49772134
14
3.1
14
74
6
52
27
0
34
38
1.57
49772091--49772150
29
2.1
29
93
0
102
28
0
30
41
1.56
49774102--49774170
28
2.5
28
95
2
122
18
10
27
43
1.82
49777209--49777283
29
2.6
29
78
4
80
21
36
21
21
1.96
49777267--49777340
29
2.6
29
95
0
139
27
31
14
27
1.95
49785086--49785160
28
2.6
28
78
2
87
21
36
20
22
1.96
49785144--49785217
29
2.6
29
95
0
139
27
31
14
27
1.95
49786751--49786788
20
1.9
20
88
0
58
52
10
2
34
1.50
49793297--49793394
30
3.3
30
72
4
90
27
26
16
29
1.97
49795043--49795072
12
2.5
12
100
0
60
73
6
6
13
1.24
49795992--49796048
11
5.5
10
73
22
55
77
1
17
3
1.00
49795981--49796048
21
3.2
20
80
12
66
76
2
17
2
1.04
49795992--49796048
5
11.0
5
77
17
55
77
1
17
3
1.00
49795992--49796048
16
3.7
14
80
17
60
77
1
17
3
1.00
49796096--49796126
12
2.6
12
94
0
53
45
9
16
29
1.79
49796129--49796153
12
2.1
12
100
0
50
76
0
16
8
1.02
49796123--49796178
18
3.1
18
76
5
51
69
3
19
7
1.27
49796129--49796209
30
2.7
31
79
7
96
64
1
22
12
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49798419--49798514
30
3.2
30
73
5
79
27
25
16
31
1.97
49811805--49811884
38
2.1
38
100
0
160
47
2
18
31
1.62
49815235--49815405
40
4.3
39
77
10
159
28
21
26
23
1.99
49823260--49823439
40
4.5
39
77
10
161
27
22
26
23
1.99
49826920--49827007
28
3.1
29
78
10
85
34
21
23
20
1.97
49827113--49827177
28
2.3
28
94
0
112
30
7
27
33
1.85
49829341--49829412
15
4.6
17
70
23
52
36
18
8
37
1.81
49829335--49829424
46
2.0
46
100
0
180
37
17
7
36
1.79
49829739--49829846
40
2.7
39
84
8
121
21
30
25
23
1.99
49841886--49841952
25
2.7
25
88
0
98
46
11
19
22
1.82
49842070--49842149
26
3.0
26
83
3
106
40
22
21
16
1.91
49842308--49842372
22
3.0
22
83
0
85
30
23
24
21
1.99
49842797--49843291
27
18.3
27
82
4
466
25
19
17
37
1.94
49842807--49843282
54
8.8
54
86
0
621
24
20
18
36
1.95
49842807--49843283
81
5.9
81
88
2
618
24
20
18
36
1.95
49843274--49843744
27
17.6
27
76
7
406
31
11
19
37
1.87
49843310--49843723
214
1.9
214
83
5
525
31
11
19
37
1.87
49845641--49845962
159
2.0
159
95
0
581
26
11
12
49
1.74
49848205--49848256
27
1.9
27
88
0
77
30
15
17
36
1.91
49849173--49849423
27
9.3
27
84
6
303
28
23
8
39
1.84
49849184--49849512
27
12.2
27
80
2
86
31
23
8
36
1.85
49849173--49849422
54
4.6
54
90
0
392
28
23
8
40
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49849173--49849423
81
3.1
80
84
6
353
28
23
8
39
1.84
49849416--49849566
54
2.8
54
93
0
257
39
21
7
31
1.82
49849416--49849567
27
5.6
27
85
0
214
39
21
7
31
1.82
49853288--49853538
27
9.3
27
84
6
303
28
23
8
39
1.84
49853299--49853627
27
12.2
27
80
2
86
31
23
8
36
1.85
49853288--49853537
54
4.6
54
90
0
392
28
23
8
40
1.84
49853288--49853538
81
3.1
80
84
6
353
28
23
8
39
1.84
49853531--49853681
54
2.8
54
93
0
257
39
21
7
31
1.82
49853531--49853682
27
5.6
27
85
0
214
39
21
7
31
1.82
49857414--49857664
27
9.3
27
85
6
312
28
23
8
39
1.84
49857425--49857753
27
12.2
27
81
2
95
31
23
8
36
1.85
49857414--49857663
54
4.6
54
91
0
401
28
23
8
39
1.84
49857414--49857664
81
3.1
81
85
4
371
28
23
8
39
1.84
49857657--49857806
54
2.8
54
93
1
257
40
21
7
31
1.81
49857657--49857807
27
5.6
27
85
0
214
39
21
7
31
1.80
49860416--49860453
20
2.1
19
85
14
53
76
0
15
7
1.01
49861759--49861861
29
3.6
29
78
2
109
23
15
32
29
1.95
49867857--49867894
20
2.1
19
85
14
53
76
0
15
7
1.01
49869201--49869303
29
3.6
29
78
2
109
23
15
32
29
1.95
49874418--49874501
27
3.1
27
84
6
100
34
16
15
33
1.91
49874436--49874585
54
2.8
52
76
5
147
38
20
11
30
1.88
49874538--49874599
27
2.3
27
78
13
74
40
14
11
33
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49881337--49881520
40
4.6
39
75
6
138
26
23
27
22
2.00
49881377--49881565
80
2.4
81
77
4
186
23
24
29
22
1.99
49891363--49891504
40
3.5
40
83
1
124
27
23
26
22
1.99
49891402--49891530
40
3.2
39
84
6
152
24
22
27
25
2.00
49896289--49896396
40
2.7
40
79
0
126
24
16
23
36
1.94
49896371--49896441
37
1.9
36
88
2
106
28
9
26
35
1.88
49896303--49896471
40
4.3
40
77
11
152
25
16
23
34
1.95
49896332--49896476
77
1.9
77
82
0
182
26
15
24
33
1.95
49899813--49899983
93
1.8
93
91
2
281
28
28
21
21
1.98
49899810--49899980
46
3.7
45
76
16
172
29
28
21
21
1.98
49904657--49904785
40
3.2
40
82
6
154
24
18
24
31
1.97
49904711--49904802
40
2.3
41
82
1
114
23
17
27
31
1.97
49905857--49905896
20
1.9
22
85
10
57
47
0
10
42
1.37
49907923--49907979
9
5.9
9
73
15
51
35
8
21
35
1.84
49907921--49907991
20
3.5
20
94
0
124
35
11
21
32
1.89
49907932--49907986
11
5.4
11
70
16
55
36
12
20
30
1.90
49908036--49908205
24
7.2
24
88
4
249
28
22
21
26
1.99
49908038--49908205
47
3.6
47
91
2
259
28
22
22
26
1.99
49910149--49910290
40
3.5
40
83
1
124
27
23
26
22
1.99
49910188--49910316
40
3.2
39
84
6
152
24
22
27
25
2.00
49913711--49913750
20
1.9
22
85
10
57
47
0
10
42
1.37
49915777--49915833
9
5.9
9
73
15
51
35
8
21
35
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49915775--49915845
20
3.5
20
94
0
124
35
11
21
32
1.89
49915786--49915840
11
5.4
11
70
16
55
36
12
20
30
1.90
49915892--49916058
23
7.1
23
89
2
244
28
22
21
27
1.99
49915890--49916060
24
7.2
24
87
4
249
28
22
21
26
1.99
49915891--49916060
47
3.6
47
91
1
252
28
22
21
27
1.99
49915890--49916058
71
2.4
71
93
1
286
28
23
21
27
1.99
49926504--49926625
46
2.6
47
84
5
147
26
22
14
36
1.93
49935047--49935099
28
1.9
27
81
11
63
50
15
0
33
1.44
49945798--49945971
47
3.8
46
80
13
198
20
22
29
27
1.98
49951664--49951730
20
3.3
20
95
4
118
35
10
19
34
1.86
49951675--49951730
11
5.5
11
75
16
66
35
10
19
33
1.87
49951664--49951744
40
2.0
39
84
13
103
35
11
18
34
1.86
49951778--49951885
25
4.4
24
88
5
137
27
22
22
27
1.99
49955127--49955287
29
5.6
29
82
1
162
24
17
32
25
1.97
49955319--49955353
2
17.5
2
100
0
70
48
0
0
51
1.00
49963308--49963515
40
5.2
39
82
3
202
25
25
23
25
2.00
49963308--49963514
80
2.6
80
82
3
238
25
26
23
25
2.00
49971295--49971502
40
5.2
39
82
3
202
25
25
23
25
2.00
49971295--49971501
80
2.6
80
82
3
238
25
26
23
25
2.00
49974299--49974459
29
5.6
29
82
1
162
24
17
32
25
1.97
49981786--49981883
49
2.0
49
95
0
178
31
9
25
33
1.87
49982171--49982217
20
2.3
20
92
7
78
36
10
19
34
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49982266--49982372
25
4.3
25
87
7
139
27
22
22
28
1.99
49983355--49983450
34
2.9
33
77
10
97
25
21
25
28
1.99
49984347--49984657
157
2.0
157
89
1
480
27
18
15
38
1.90
49984954--49985025
36
2.0
36
100
0
144
25
30
19
25
1.98
49985360--49985389
14
2.1
14
100
0
60
13
50
6
30
1.67
49989036--49989112
22
3.6
22
77
7
95
61
2
6
29
1.35
49989031--49989119
42
2.1
42
100
0
178
61
2
7
28
1.36
49993319--49993689
47
7.8
49
90
6
566
31
7
30
29
1.85
49996004--49996204
27
7.3
27
82
4
215
29
23
7
39
1.82
49996015--49996204
84
2.3
83
89
2
285
30
23
6
39
1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427