genome.fa.s11.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  173  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48248102--48248167	27	2.5	26	85	7	87	37	22	22	16	1.93
48248102--48248175	27	2.8	27	78	13	82	36	21	24	17	1.95
48248126--48248183	27	2.1	27	84	6	73	36	27	20	15	1.93
48248340--48248398	22	2.7	22	81	0	64	32	22	25	20	1.98
48248486--48248568	27	3.1	26	87	5	112	37	21	21	19	1.94
48248767--48248952	27	7.0	27	85	2	223	24	19	19	35	1.96
48248785--48248952	79	2.1	80	85	4	223	23	19	20	36	1.95
48248783--48248974	106	1.8	106	84	4	262	26	18	20	34	1.95
48248820--48248987	79	2.1	78	78	10	173	27	17	19	35	1.94
48248964--48249437	27	18.2	27	84	10	632	40	9	23	27	1.84
48248964--48249437	78	6.1	78	87	11	645	40	9	23	27	1.84
48248964--48249437	233	2.0	235	87	7	689	40	9	23	27	1.84
48251450--48251624	6	28.8	6	72	17	130	48	12	17	21	1.81
48251450--48251548	30	3.3	30	90	7	155	48	15	17	19	1.81
48251450--48251624	79	2.2	79	90	4	273	48	12	17	21	1.81
48251741--48251806	27	2.5	26	85	7	87	37	22	22	16	1.93
48251741--48251814	27	2.8	27	78	13	82	36	21	24	17	1.95
48251765--48251822	27	2.1	27	84	6	73	36	27	20	15	1.93
48251979--48252037	22	2.7	22	81	0	64	32	22	25	20	1.98
48252125--48252207	27	3.1	26	87	5	112	37	21	21	19	1.94
48252406--48252600	27	7.3	27	85	0	239	25	18	19	35	1.95
48252406--48252600	54	3.6	54	86	3	268	25	18	19	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48252605--48253107	27	19.3	27	86	9	667	39	9	23	27	1.85
48252610--48253107	52	9.6	53	86	8	640	39	9	24	27	1.85
48252596--48253087	209	2.3	211	87	9	713	40	9	23	27	1.85
48252595--48253107	236	2.2	234	86	9	715	39	9	23	27	1.85
48255064--48255238	6	28.8	6	73	19	132	48	13	17	21	1.81
48255064--48255238	79	2.1	79	87	6	242	48	13	17	21	1.81
48255356--48255421	27	2.5	26	85	7	87	37	22	22	16	1.93
48255356--48255429	27	2.8	27	78	13	82	36	21	24	17	1.95
48255380--48255437	27	2.1	27	84	6	73	36	27	20	15	1.93
48255594--48255652	22	2.7	22	81	0	64	32	22	25	20	1.98
48255740--48255822	27	3.1	26	87	5	112	37	21	21	19	1.94
48256021--48256215	27	7.3	27	86	1	221	26	19	18	35	1.95
48256023--48256215	81	2.4	80	84	2	244	26	19	17	36	1.94
48256224--48256760	27	19.9	27	84	3	688	41	9	21	27	1.83
48261188--48261240	24	2.2	25	93	3	90	22	32	0	45	1.53
48271912--48271953	19	2.2	19	91	0	66	33	21	16	28	1.95
48272085--48272151	34	2.0	34	84	0	89	26	20	28	23	1.99
48278889--48279031	40	3.4	42	77	11	130	32	24	16	25	1.96
48288667--48288862	69	2.8	68	85	5	250	34	16	28	20	1.95
48288701--48288862	69	2.3	70	97	2	308	35	17	27	19	1.94
48299042--48299100	28	2.1	28	100	0	118	16	11	25	45	1.82
48300727--48300764	20	1.9	20	88	0	58	52	10	2	34	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48306413--48306481	28	2.5	28	95	2	122	18	10	27	43	1.82
48309495--48309597	54	1.9	54	81	0	125	29	18	24	28	1.98
48314983--48315134	40	3.8	40	80	5	146	24	28	21	26	1.99
48320283--48320412	40	3.3	39	76	8	136	23	27	23	24	2.00
48320299--48320450	40	3.8	40	78	6	148	22	26	23	27	1.99
48320299--48320448	80	1.9	80	83	8	198	22	26	24	27	1.99
48326190--48326341	40	3.8	40	81	5	155	23	28	21	26	1.99
48328165--48328228	31	2.1	31	96	0	119	23	21	15	39	1.92
48328420--48328562	24	6.0	24	91	4	209	26	22	22	28	1.99
48328420--48328561	47	3.0	48	90	5	207	26	22	22	28	1.99
48328419--48328562	71	2.0	72	89	4	220	26	22	22	29	1.99
48328613--48328672	20	3.0	20	95	0	111	33	20	10	36	1.86
48328613--48328667	11	5.4	11	70	16	55	30	20	10	38	1.87
48328715--48328762	25	1.9	25	86	0	69	25	16	25	33	1.96
48330002--48330347	27	12.8	27	86	3	392	40	8	22	28	1.82
48330271--48330575	27	11.3	27	85	2	242	32	8	20	37	1.84
48330425--48330592	27	6.3	26	87	2	174	31	7	19	42	1.78
48339801--48339981	49	3.7	49	87	2	236	28	28	19	24	1.98
48342123--48342182	30	2.0	30	87	6	86	56	18	16	8	1.64
48342123--48342182	15	4.0	15	82	8	77	56	18	16	8	1.64
48355263--48355489	49	4.6	49	82	2	256	29	28	17	24	1.97
48355308--48355489	99	1.8	101	86	2	269	29	28	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48357629--48357690	28	2.2	28	77	2	72	32	24	24	19	1.98
48359780--48359897	39	3.0	38	79	9	130	22	21	25	31	1.98
48368554--48368689	29	4.7	29	80	6	134	27	30	14	27	1.95
48368555--48368688	59	2.3	58	83	3	162	27	30	14	26	1.95
48373577--48373782	40	5.2	40	80	5	211	25	25	23	25	2.00
48373577--48373784	80	2.6	81	83	4	235	25	25	23	25	2.00
48380045--48380133	27	3.3	26	80	3	88	29	13	19	38	1.89
48380112--48380423	27	11.7	27	78	4	256	30	8	20	39	1.84
48380112--48380423	53	5.8	54	80	3	290	30	8	20	39	1.84
48380083--48380424	80	4.3	79	77	5	292	30	9	21	38	1.85
48380740--48380831	28	3.3	28	87	3	132	30	33	15	20	1.93
48386640--48386888	86	2.9	85	86	3	331	33	25	14	25	1.95
48386637--48386890	43	6.0	42	76	7	221	34	25	14	25	1.94
48390763--48390824	24	2.6	24	86	0	88	29	25	14	30	1.95
48391041--48391115	24	3.2	24	75	7	82	30	22	13	33	1.92
48392453--48392503	20	2.7	19	82	14	54	41	0	21	37	1.54
48393153--48393274	46	2.7	45	82	10	133	31	15	27	25	1.96
48393156--48393515	49	7.6	48	71	13	196	30	18	27	24	1.98
48393292--48393515	98	2.4	91	82	6	241	28	19	28	24	1.99
48398420--48398493	28	2.7	28	75	10	82	43	21	17	17	1.88
48411319--48411528	40	5.2	40	87	2	305	25	24	28	21	1.99
48419454--48419663	40	5.2	40	87	2	305	25	24	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48425097--48425134	20	1.9	20	88	0	58	34	2	10	52	1.50
48441225--48441286	6	10.3	6	76	0	61	4	20	1	72	1.12
48441214--48441288	24	3.1	24	76	0	78	8	24	1	66	1.26
48441225--48441302	12	6.9	11	78	11	52	3	21	1	73	1.07
48443806--48443979	46	3.8	46	77	13	196	21	21	28	28	1.98
48443803--48443972	91	1.8	93	92	2	290	21	21	28	27	1.99
48446896--48446945	15	3.4	15	86	2	66	10	18	12	60	1.59
48449326--48449500	46	3.8	46	78	11	187	21	21	28	28	1.99
48449323--48449493	92	1.8	93	91	1	281	22	22	28	26	1.99
48453098--48453156	29	2.0	30	83	9	77	28	30	8	32	1.87
48459679--48459808	40	3.2	40	84	4	174	22	24	29	23	1.99
48466881--48467010	40	3.2	40	83	4	165	23	24	28	23	2.00
48470527--48470711	79	2.3	81	83	7	227	23	27	24	24	2.00
48470520--48470711	40	4.8	39	76	8	163	23	28	23	24	2.00
48471999--48472041	17	2.5	17	100	0	86	6	18	0	74	1.04
48472657--48472726	30	2.3	30	82	0	86	25	25	22	25	2.00
48475947--48476029	29	2.9	29	87	0	112	25	30	16	27	1.97
48477358--48477389	16	2.0	16	100	0	64	18	6	25	50	1.70
48477619--48477844	48	4.8	48	68	16	141	31	6	21	39	1.79
48477619--48478450	139	6.0	139	88	0	1153	30	7	21	41	1.81
48477748--48478400	48	14.0	48	66	15	262	29	7	21	41	1.81
48477619--48478437	417	2.0	417	89	0	1269	29	7	21	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48479284--48479517	33	6.9	34	75	9	172	30	15	23	29	1.96
48479321--48479533	101	2.1	101	92	0	354	29	15	25	29	1.96
48479284--48479517	68	3.4	67	75	8	188	30	15	23	29	1.96
48479436--48479622	86	2.1	88	88	3	270	29	15	26	28	1.96
48482172--48482303	65	2.0	66	98	1	257	36	13	21	28	1.91
48484560--48484731	93	1.8	93	87	0	254	27	29	20	22	1.99
48487117--48487205	30	3.0	30	83	1	108	58	15	15	10	1.63
48487117--48487196	15	5.4	15	77	7	83	60	13	16	10	1.59
48487128--48487205	15	5.2	15	76	6	86	57	15	15	11	1.65
48492736--48492975	116	2.1	116	99	0	471	28	25	22	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427