genome.fa.s11.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  190  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52494641--52494782	40	3.5	40	85	0	167	23	28	22	26	1.99
52494673--52494824	40	3.8	40	82	5	155	22	25	23	28	1.99
52498511--52498668	44	3.7	43	81	12	182	24	17	26	32	1.96
52499837--52499954	39	2.9	40	85	9	166	24	32	19	23	1.98
52507833--52508014	39	4.6	39	89	0	247	23	31	21	23	1.98
52507863--52508015	39	3.9	39	92	0	252	23	32	20	23	1.98
52515900--52516081	39	4.6	39	87	0	229	23	31	21	23	1.98
52515930--52516082	39	3.9	39	90	0	234	24	32	20	22	1.98
52530994--52531228	29	8.2	29	83	5	298	27	12	33	26	1.93
52534863--52534965	29	3.6	29	87	0	143	25	33	15	26	1.95
52542303--52542403	29	3.6	29	87	4	143	24	32	15	26	1.96
52542311--52542422	57	2.0	57	80	3	127	25	32	14	27	1.95
52546991--52547139	80	1.9	80	81	2	183	22	30	24	22	1.99
52547032--52547139	40	2.7	38	85	8	128	21	29	25	23	1.99
52555104--52555252	80	1.9	80	81	2	183	22	30	24	22	1.99
52555145--52555252	40	2.7	38	85	8	128	21	29	25	23	1.99
52560698--52560756	28	2.1	28	90	0	91	22	5	27	45	1.73
52562213--52562307	24	4.0	24	89	6	140	28	22	20	29	1.98
52562353--52562423	20	3.6	19	90	7	108	35	19	11	33	1.88
52562357--52562412	11	5.5	11	71	16	57	33	19	12	33	1.89
52562460--52562507	25	2.0	24	83	4	60	22	16	25	35	1.95
52570255--52570349	24	4.0	24	90	6	140	27	21	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52570462--52570509	25	2.0	24	83	4	60	22	16	25	35	1.95
52574124--52574163	21	2.0	21	90	5	64	10	42	30	17	1.82
52576427--52576548	43	2.9	41	81	4	136	29	22	15	32	1.95
52580944--52581117	87	2.0	87	97	0	330	25	22	15	36	1.93
52583144--52583195	24	2.1	25	82	10	63	36	23	0	40	1.55
52583351--52583508	43	3.7	43	81	10	173	32	26	17	23	1.97
52587205--52587388	40	4.6	39	77	6	147	28	23	26	22	1.99
52595311--52595410	38	2.5	40	82	4	123	31	23	25	21	1.98
52595311--52595460	40	3.8	40	82	6	162	28	22	26	22	1.99
52595350--52595492	40	3.6	39	84	1	160	25	22	27	23	1.99
52597373--52597437	29	2.2	29	94	0	112	30	16	27	24	1.97
52605265--52605327	28	2.2	28	91	2	99	30	17	28	23	1.97
52607023--52607176	39	3.9	39	89	4	238	24	21	30	23	1.99
52609224--52609263	21	2.0	20	90	5	62	42	22	0	35	1.54
52612249--52612293	19	2.4	19	88	7	65	26	8	0	64	1.23
52614242--52614321	25	3.0	26	73	16	65	41	1	5	52	1.31
52617312--52617705	126	3.1	124	84	6	467	29	17	16	36	1.92
52617760--52617894	34	4.0	33	81	11	150	41	15	0	42	1.52
52633704--52633735	3	10.7	3	93	0	55	62	0	34	3	1.11
52642354--52642454	50	2.0	50	90	1	159	29	4	11	53	1.58
52644659--52644716	30	1.9	30	89	3	89	56	6	0	36	1.26
52644703--52645178	238	1.9	248	86	7	679	45	5	11	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52649446--52649515	25	2.8	25	87	8	106	31	27	17	24	1.97
52653175--52653273	29	3.4	29	77	5	92	27	14	20	38	1.91
52653204--52653492	29	10.0	29	69	9	162	25	13	21	39	1.89
52653172--52653492	58	5.5	58	79	2	268	25	13	21	38	1.91
52653132--52653492	116	3.1	116	75	2	269	26	14	21	38	1.91
52656356--52656418	24	2.6	24	100	0	126	34	26	17	20	1.95
52658422--52658606	40	4.6	40	80	5	180	26	23	27	22	2.00
52658422--52658609	80	2.3	80	79	12	206	26	23	27	22	2.00
52666397--52666581	40	4.6	40	80	5	180	26	23	27	22	2.00
52666397--52666584	80	2.3	80	79	12	206	26	23	27	22	2.00
52670122--52670237	23	5.0	23	82	11	130	35	18	22	23	1.96
52678621--52678772	67	2.3	67	81	9	175	32	17	28	20	1.96
52680680--52680869	47	3.9	49	80	9	194	30	28	17	24	1.97
52687302--52687333	15	2.0	17	88	11	50	56	18	12	12	1.67
52696065--52696485	138	3.1	138	90	3	641	41	8	4	44	1.56
52697845--52697895	23	2.3	22	80	10	59	41	17	5	35	1.74
52698973--52699170	98	2.0	98	100	0	396	28	12	11	48	1.74
52701552--52701585	11	2.9	12	86	8	52	2	32	8	55	1.45
52702617--52702641	9	2.8	9	100	0	50	64	0	12	24	1.27
52703132--52703270	42	3.2	43	74	16	110	24	17	24	33	1.97
52709806--52709864	9	6.4	9	84	2	64	54	18	3	23	1.59
52709909--52710011	37	2.9	34	80	8	116	42	16	7	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52711947--52712109	39	4.2	39	92	0	254	22	20	32	24	1.98
52721091--52721124	18	1.9	18	88	5	52	17	35	35	11	1.87
52723334--52723516	39	4.6	39	87	0	240	24	22	30	22	1.99
52730760--52730941	39	4.6	39	86	2	231	24	21	30	23	1.99
52737606--52737699	21	4.5	21	93	0	161	15	38	30	14	1.89
52740875--52740995	61	2.0	61	98	0	233	26	13	26	33	1.93
52752459--52752584	47	2.7	47	94	0	225	24	19	26	28	1.99
52755568--52755617	15	3.4	15	83	2	57	8	18	14	60	1.58
52758050--52758172	47	2.6	47	98	0	237	23	20	28	27	1.99
52763383--52763430	24	2.0	24	100	0	96	33	25	16	25	1.96
52765073--52765104	7	4.4	7	92	7	55	15	0	43	40	1.47
52765073--52765101	15	1.9	15	100	0	58	13	0	41	44	1.44
52778916--52778978	24	2.6	24	100	0	126	34	26	17	20	1.95
52786704--52786790	24	3.6	24	100	0	174	35	26	17	20	1.95
52792361--52792669	40	7.7	40	89	0	460	22	22	27	27	1.99
52795468--52795631	42	3.9	42	83	4	206	28	25	17	29	1.97
52795468--52795631	85	1.9	84	84	6	215	28	25	17	29	1.97
52813790--52813904	29	4.0	29	81	6	101	29	27	13	28	1.95
52813793--52813879	29	3.0	29	83	8	106	31	27	12	28	1.93
52814115--52814149	16	2.2	16	94	0	61	17	20	17	45	1.85
52818330--52818419	29	3.1	29	82	1	119	28	26	15	28	1.96
52818655--52818691	16	2.3	16	90	0	56	10	16	18	54	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52828187--52828257	28	2.5	28	93	4	117	32	28	12	26	1.93
52828812--52828847	2	18.0	2	100	0	72	50	0	0	50	1.00
52836012--52836218	40	5.2	40	85	2	222	25	28	22	24	2.00
52837044--52837089	17	2.5	19	74	22	53	34	23	17	23	1.96
52843289--52843461	46	3.8	46	78	14	212	21	20	29	28	1.98
52846389--52846467	15	5.4	15	77	10	83	10	17	13	58	1.63
52846380--52846466	29	3.0	29	81	8	95	10	17	16	56	1.67
52848834--52849009	46	3.8	46	80	12	225	21	21	28	28	1.98
52848831--52849001	93	1.8	93	96	0	315	21	21	29	28	1.98
52852655--52852779	44	2.9	42	76	12	137	31	26	17	24	1.97
52853882--52853906	13	1.9	13	100	0	50	40	24	4	32	1.73
52859021--52859131	58	1.9	57	85	1	150	26	17	30	26	1.97
52859008--52859122	29	4.0	29	82	6	128	26	16	30	26	1.97
52869478--52869510	15	2.2	15	94	0	57	48	9	6	36	1.60
52869588--52869808	46	4.7	45	75	15	166	29	19	28	22	1.98
52869595--52869856	140	1.9	141	81	5	325	29	19	27	23	1.98
52877116--52877152	10	3.7	10	92	7	58	37	10	18	32	1.86
52877122--52877172	21	2.4	21	86	0	66	39	11	19	29	1.87
52877220--52877290	25	2.9	24	91	4	106	26	22	23	26	2.00
52882208--52882383	46	3.8	45	74	12	169	21	20	28	29	1.98
52882205--52882376	93	1.8	93	91	0	281	22	20	28	28	1.99
52887176--52887335	49	3.3	49	92	1	252	31	8	30	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52889229--52889308	15	5.4	15	77	7	83	10	18	13	57	1.64
52889220--52889307	30	3.0	30	80	11	92	10	18	15	55	1.68
52891695--52891870	46	3.8	46	74	12	180	22	20	27	29	1.98
52891692--52891863	93	1.8	93	92	0	290	22	20	27	28	1.99
52897333--52897373	10	4.0	10	96	3	73	39	12	19	29	1.88
52897333--52897393	21	3.0	21	87	2	79	39	11	19	29	1.87
52897440--52897510	24	2.9	25	87	4	108	28	23	21	26	1.99
52904533--52904707	43	4.1	43	78	8	194	32	26	17	24	1.96
52907120--52907341	46	4.8	46	83	9	299	28	29	20	21	1.98
52913952--52914060	55	2.0	55	81	3	130	28	21	27	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427