Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  367  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106417819--106417868
21
2.4
21
75
0
55
68
2
8
22
1.26
106422509--106422606
49
2.0
47
83
11
119
29
10
13
46
1.75
106427170--106427216
3
15.7
3
100
0
94
31
0
0
68
0.90
106427588--106427659
36
2.0
36
97
0
135
44
12
11
31
1.77
106432720--106433287
197
2.9
197
85
5
698
26
15
18
39
1.90
106442696--106442746
20
2.5
21
80
6
68
29
9
31
29
1.89
106446268--106446420
32
4.8
32
85
0
216
46
8
12
32
1.72
106446268--106446420
64
2.4
64
91
0
243
46
8
12
32
1.72
106449577--106449799
79
2.8
79
81
9
238
25
22
26
26
2.00
106449577--106449801
40
5.7
40
86
4
253
24
22
26
26
2.00
106449581--106449808
119
1.9
120
79
7
259
25
21
26
25
1.99
106449577--106449824
79
3.1
79
79
9
204
25
21
26
26
2.00
106452034--106452069
19
1.9
19
94
5
65
38
13
19
27
1.90
106452295--106452489
72
2.7
72
92
0
318
48
18
11
21
1.79
106455018--106455045
2
14.0
2
100
0
56
50
0
0
50
1.00
106456938--106456979
21
2.0
21
90
0
66
23
4
0
71
1.05
106457768--106457806
21
2.0
21
90
10
64
56
2
5
35
1.35
106460271--106460307
2
18.5
2
100
0
74
48
0
0
51
1.00
106463927--106464139
107
2.0
108
96
0
392
42
8
6
43
1.60
106466033--106466072
19
2.1
19
86
9
55
70
5
0
25
1.08
106472162--106472212
6
8.5
6
93
0
66
0
54
0
45
0.99
106480606--106480661
29
2.0
28
83
16
71
44
0
1
53
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106480729--106480777
22
2.2
23
88
3
73
57
2
2
38
1.22
106482389--106482413
2
12.5
2
100
0
50
52
48
0
0
1.00
106493337--106493609
136
2.0
136
100
0
546
29
19
24
26
1.98
106495698--106495722
11
2.3
11
100
0
50
56
20
8
16
1.65
106498396--106498426
7
4.4
7
100
0
62
58
0
0
41
0.98
106500338--106500387
25
2.0
25
100
0
100
24
20
8
48
1.76
106509907--106509943
3
12.3
3
100
0
74
32
0
0
67
0.91
106511463--106511565
49
2.1
49
81
3
127
30
19
23
27
1.98
106513060--106513093
10
3.2
10
84
15
50
52
0
0
47
1.00
106513060--106513096
12
3.2
12
92
7
60
51
0
0
48
1.00
106513064--106513126
20
3.1
20
71
8
56
47
1
0
50
1.10
106513525--106513618
40
2.4
40
94
1
154
41
18
8
31
1.80
106513537--106513618
40
2.0
40
100
0
164
41
19
8
30
1.81
106519097--106519158
29
2.1
29
82
5
72
22
6
8
62
1.45
106519871--106519897
4
6.8
4
100
0
54
22
0
0
77
0.76
106531506--106531552
14
3.2
14
80
11
58
74
2
0
23
0.93
106531695--106531765
35
2.0
35
100
0
142
38
8
22
30
1.84
106531789--106531814
13
2.0
13
100
0
52
0
0
7
92
0.39
106544083--106544108
2
13.0
2
100
0
52
50
0
0
50
1.00
106544738--106544779
20
2.2
19
86
4
57
38
0
7
54
1.28
106546860--106546903
18
2.4
18
84
3
52
47
0
4
47
1.22
106547177--106547227
17
3.0
17
74
8
50
68
1
29
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106548366--106548440
39
1.9
39
86
5
107
26
24
21
28
1.99
106548621--106548697
28
2.8
28
72
14
79
35
23
0
41
1.55
106550673--106550714
16
2.7
16
78
14
52
42
0
0
57
0.99
106550904--106550959
23
2.3
23
78
6
58
53
5
5
35
1.47
106551980--106552044
23
3.0
22
71
15
62
18
18
21
41
1.90
106553820--106553867
25
1.9
25
82
0
60
31
18
0
50
1.48
106554024--106554157
46
2.9
47
85
2
166
23
23
12
40
1.89
106556292--106556334
11
3.7
11
82
11
50
60
2
0
37
1.10
106556297--106556375
30
2.6
30
75
13
72
54
5
0
40
1.22
106558135--106558176
22
2.0
21
85
4
57
14
9
9
66
1.44
106566559--106566588
15
2.0
15
93
0
51
3
0
6
90
0.56
106566558--106566588
16
2.0
15
93
6
53
3
0
6
90
0.55
106566883--106566925
19
2.1
21
87
12
63
51
0
6
41
1.29
106577806--106577871
33
2.0
33
100
0
132
42
15
15
27
1.86
106581308--106581348
15
2.7
15
92
0
64
46
14
12
26
1.80
106582933--106582970
2
19.0
2
100
0
76
50
0
0
50
1.00
106584184--106584238
27
2.0
28
85
3
76
38
3
5
52
1.42
106584223--106584260
20
1.9
20
89
10
60
36
2
2
57
1.26
106596719--106597066
64
5.2
64
63
21
172
30
25
18
25
1.98
106596783--106597002
73
3.1
73
64
20
196
31
24
18
25
1.97
106596685--106597108
137
3.1
137
98
0
812
31
24
18
24
1.98
106597356--106597409
26
2.1
27
82
6
67
24
14
24
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106597388--106597448
28
2.3
27
85
5
79
31
9
19
39
1.84
106599610--106599776
35
4.6
35
85
7
201
33
24
10
31
1.90
106599605--106599776
75
2.4
73
84
8
226
33
23
11
31
1.90
106607088--106607254
35
4.6
35
85
7
201
33
24
10
31
1.90
106607083--106607254
75
2.4
73
84
8
226
33
23
11
31
1.90
106609051--106609186
26
5.2
26
97
0
245
37
24
4
33
1.75
106610995--106611102
44
2.4
44
87
3
144
29
23
13
33
1.93
106612310--106612403
24
3.9
24
86
5
136
23
13
27
35
1.93
106614210--106614368
32
5.0
32
87
1
239
45
10
12
32
1.75
106614201--106614368
63
2.7
62
90
6
259
47
9
11
31
1.73
106619114--106619154
18
2.3
18
87
8
57
29
21
0
48
1.50
106619276--106619410
39
3.4
39
74
11
116
27
27
20
24
1.99
106620367--106620413
25
1.9
25
86
4
69
10
14
4
70
1.31
106620566--106620590
8
3.1
8
100
0
50
40
0
0
60
0.97
106622595--106622622
2
14.0
2
100
0
56
50
0
0
50
1.00
106624099--106624132
14
2.5
14
90
4
52
82
0
17
0
0.67
106624799--106624890
37
2.5
38
82
7
109
43
1
21
33
1.60
106631073--106631170
33
3.0
33
95
0
169
34
5
21
38
1.76
106635458--106635503
3
15.3
3
90
0
74
65
2
0
32
1.05
106639588--106639621
17
2.0
17
94
0
59
26
5
0
67
1.13
106645831--106645866
17
2.2
16
90
5
54
63
8
19
8
1.47
106646935--106646980
18
2.7
18
78
18
53
34
0
23
41
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106651202--106651282
29
2.8
28
77
5
72
23
14
33
28
1.94
106653237--106653304
33
2.1
32
83
8
84
35
20
8
35
1.84
106660827--106661012
94
2.0
92
82
6
216
33
14
11
40
1.83
106666993--106667033
13
2.9
14
77
22
50
53
0
0
46
1.00
106667066--106667122
15
3.5
15
73
17
60
50
1
0
47
1.11
106677171--106677206
2
18.0
2
94
0
63
50
2
0
47
1.15
106684314--106684477
42
3.9
42
76
4
141
31
25
15
28
1.96
106693435--106693468
17
2.0
17
100
0
68
35
17
11
35
1.87
106693636--106693772
53
2.6
52
82
3
150
29
27
15
27
1.96
106697684--106697731
20
2.5
20
86
3
62
64
2
6
27
1.28
106697726--106697788
27
2.3
26
76
10
63
50
11
0
38
1.38
106697755--106697784
15
2.0
15
93
0
51
40
10
0
50
1.36
106698389--106698489
24
4.2
24
94
0
175
33
3
42
19
1.70
106699840--106699950
27
4.1
27
80
7
111
16
23
23
36
1.94
106700687--106700728
22
1.9
22
95
0
75
21
28
19
30
1.97
106706206--106706259
24
2.2
24
90
0
90
35
3
40
20
1.70
106707674--106707760
27
3.2
27
77
18
99
19
22
22
34
1.97
106707674--106707784
54
2.1
53
86
1
150
19
22
21
36
1.96
106707684--106707784
27
3.8
26
83
6
121
19
23
19
36
1.95
106712598--106712644
14
3.4
14
79
8
51
38
0
0
61
0.96
106720781--106720811
2
15.5
2
93
0
53
54
0
0
45
0.99
106725971--106726153
76
2.4
76
86
0
249
32
28
13
25
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106725970--106726171
25
8.0
25
71
9
142
32
27
13
26
1.94
106734269--106734320
19
2.8
17
75
13
50
32
0
5
61
1.20
106735017--106735071
20
2.8
20
97
0
101
41
12
18
27
1.86
106735157--106735195
14
2.8
14
92
0
60
38
10
20
30
1.86
106736875--106736925
23
2.3
23
83
6
61
62
7
0
29
1.23
106736899--106736992
25
3.7
25
73
8
82
59
3
6
30
1.38
106747860--106748012
77
2.0
77
93
2
263
22
28
25
23
2.00
106747859--106748015
39
4.1
39
92
2
264
22
28
25
22
1.99
106754102--106754152
15
3.5
15
72
5
59
47
0
7
45
1.32
106755135--106755180
23
2.0
23
87
8
67
10
8
39
41
1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427