genome.fa.s11.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  152  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41781599--41781688	28	3.3	28	86	10	116	36	22	23	17	1.95
41782738--41782770	17	2.0	17	88	5	50	66	0	27	6	1.15
41787296--41787381	43	2.0	43	100	0	172	41	20	9	27	1.83
41789587--41789716	29	4.5	29	88	0	163	23	30	15	30	1.95
41789529--41789717	58	3.3	58	77	5	179	24	32	16	26	1.96
41797568--41797702	29	4.7	29	86	3	155	23	31	15	29	1.95
41797514--41797703	58	3.3	58	77	4	179	24	33	16	26	1.96
41807423--41807500	33	2.4	32	80	6	84	26	23	16	33	1.96
41807444--41807636	101	1.9	101	91	0	314	29	24	15	30	1.96
41811078--41811133	26	2.2	26	100	0	112	30	7	26	35	1.83
41819206--41819286	26	3.2	26	94	1	146	30	6	25	37	1.81
41827256--41827314	29	2.0	29	83	6	75	38	5	25	30	1.77
41827824--41827977	67	2.3	65	84	7	184	33	16	28	22	1.95
41832255--41832306	10	4.9	10	84	11	50	59	5	0	34	1.21
41838103--41838184	24	3.4	24	81	8	103	34	20	23	21	1.97
41841722--41841929	40	5.2	39	85	1	227	25	25	22	26	2.00
41841722--41841929	80	2.6	80	84	1	256	25	25	22	26	2.00
41849736--41849943	40	5.2	39	85	1	227	25	25	22	26	2.00
41849736--41849943	80	2.6	80	84	1	256	25	25	22	26	2.00
41853486--41853609	39	3.2	38	82	6	108	27	27	20	24	1.99
41853499--41853705	40	5.2	39	84	2	218	25	26	21	26	2.00
41853499--41853705	79	2.6	80	83	2	247	25	26	21	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41856704--41856894	96	2.0	97	87	3	278	47	12	8	30	1.72
41857572--41857630	24	2.5	24	78	13	59	61	11	1	25	1.40
41857737--41857769	16	2.1	16	94	5	59	30	0	0	69	0.88
41866973--41867046	36	2.1	36	100	0	148	25	0	8	66	1.19
41866997--41867044	25	1.9	25	83	8	62	22	0	8	68	1.16
41866990--41867045	18	3.2	16	69	26	51	26	0	7	66	1.18
41871249--41871300	23	2.3	24	80	12	65	17	9	1	71	1.22
41871269--41871308	16	2.6	16	82	17	50	25	7	0	67	1.16
41876546--41876588	13	3.5	13	78	18	56	48	11	0	39	1.40
41876546--41876597	23	2.3	23	93	0	86	50	11	0	38	1.39
41879806--41879966	29	5.6	29	93	0	259	26	14	32	26	1.95
41887580--41887740	29	5.6	29	93	0	259	26	14	32	26	1.95
41892574--41892653	30	2.7	30	96	1	144	18	37	27	16	1.92
41907661--41907827	35	4.6	38	79	10	163	32	11	23	32	1.90
41907661--41907831	75	2.4	75	82	7	194	32	11	23	32	1.91
41910432--41910595	71	2.3	71	100	0	328	18	28	17	35	1.94
41910432--41910629	71	2.8	70	91	3	258	20	28	17	33	1.95
41916381--41916540	69	2.3	69	97	2	302	19	27	18	35	1.95
41923941--41924104	71	2.3	71	100	0	328	18	28	17	35	1.94
41923941--41924138	71	2.8	70	91	3	258	20	28	17	33	1.95
41925422--41925664	68	3.6	68	78	5	267	26	23	16	32	1.96
41925421--41925664	135	1.8	135	84	5	341	26	23	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41930420--41930497	27	2.9	28	83	5	81	43	19	16	20	1.88
41930490--41930685	27	7.3	27	86	3	234	28	14	17	38	1.90
41932961--41932999	18	2.2	18	86	9	53	10	20	7	61	1.52
41933732--41933777	24	1.9	24	86	0	65	50	6	28	15	1.69
41935358--41935538	40	4.6	40	89	2	251	21	27	24	26	1.99
41937431--41937519	27	3.3	27	85	0	106	40	23	16	19	1.91
41937480--41937545	27	2.5	25	79	20	64	31	13	22	31	1.93
41937509--41937707	27	7.4	27	81	2	202	25	12	20	41	1.88
41937484--41937655	81	2.1	81	82	6	206	27	13	18	40	1.88
41937511--41937708	81	2.4	81	83	0	234	25	12	19	41	1.87
41937522--41937752	81	2.9	82	79	2	225	24	14	19	41	1.89
41938031--41938081	18	2.8	19	79	8	61	21	19	17	41	1.91
41944338--41944388	18	2.8	19	70	5	52	29	21	11	37	1.89
41952412--41952446	15	2.2	16	90	5	54	60	0	17	22	1.37
41952377--41952476	42	2.3	45	84	10	127	53	1	19	27	1.52
41954231--41954306	29	2.6	29	93	0	125	26	30	18	25	1.98
41955819--41955851	8	4.1	8	96	0	57	12	3	39	45	1.57
41958769--41958816	21	2.3	20	85	3	60	45	22	16	14	1.84
41961882--41962065	40	4.6	39	75	6	138	26	23	27	22	2.00
41961922--41962110	80	2.4	81	77	4	186	23	24	29	22	1.99
41964298--41964341	17	2.4	19	82	17	58	2	22	0	75	0.92
41964298--41964342	18	2.6	17	86	13	58	2	24	0	73	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41964251--41964352	40	2.5	41	74	17	113	7	22	0	68	1.21
41964301--41964393	51	1.9	45	83	12	114	6	23	1	68	1.19
41964386--41964416	15	2.1	15	93	0	53	6	19	3	70	1.22
41965390--41965421	16	2.0	16	93	0	55	25	3	6	65	1.31
41967349--41967449	52	1.9	52	95	0	184	36	16	24	21	1.94
41967698--41968156	230	2.0	230	98	0	882	37	8	20	32	1.84
41970310--41970379	27	2.6	27	93	2	113	30	28	14	27	1.95
41978239--41978308	27	2.6	27	93	2	113	30	28	14	27	1.95
41981011--41981177	40	4.2	40	79	6	169	26	22	26	24	2.00
41989003--41989169	40	4.2	40	79	6	169	26	22	26	24	2.00
42001261--42001359	39	2.5	40	82	12	134	51	13	5	30	1.62
42001442--42001514	37	2.0	37	83	5	94	2	30	0	67	1.05
42005119--42005174	25	2.2	25	87	0	76	32	5	7	55	1.50
42006519--42006548	12	2.5	12	94	0	51	3	23	40	33	1.71
42007273--42007340	34	2.0	34	88	0	100	35	20	23	20	1.96
42008269--42008335	22	3.0	22	100	0	134	22	23	22	31	1.98
42008659--42008696	13	2.8	13	85	14	51	26	0	2	71	1.00
42008701--42008744	21	2.2	20	88	12	63	18	4	11	65	1.40
42009640--42009672	11	3.1	11	91	4	50	54	0	0	45	0.99
42009638--42009679	17	2.4	18	80	7	52	57	0	0	42	0.99
42010162--42010207	24	1.9	24	82	8	58	47	2	10	39	1.51
42010318--42010363	3	15.3	3	100	0	92	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42016652--42016861	40	5.2	40	87	2	305	25	24	28	21	1.99
42018845--42019010	46	3.6	45	75	11	156	22	27	21	29	1.99
42018845--42019015	94	1.8	92	85	7	238	22	27	21	29	1.99
42020383--42020496	43	2.7	42	77	10	124	28	24	17	29	1.97
42022091--42022198	44	2.4	44	87	3	144	29	23	13	33	1.93
42023892--42024020	44	2.8	45	82	4	152	34	13	24	27	1.93
42031300--42031426	42	3.0	42	85	6	152	28	18	13	40	1.88
42031311--42031455	42	3.5	42	81	5	132	29	19	13	37	1.90
42036278--42036445	42	3.9	42	77	3	156	29	24	17	29	1.97
42036947--42036987	21	1.9	22	85	14	59	36	26	2	34	1.70
42040646--42040760	29	4.0	29	89	4	108	26	22	14	36	1.93
42040658--42040760	29	3.5	29	96	2	188	24	24	14	36	1.93
42040657--42040790	59	2.2	60	89	1	207	25	25	14	35	1.93
42042059--42042094	18	1.9	18	88	5	54	11	25	0	63	1.27
42046435--42046601	40	4.2	40	78	6	160	25	22	27	24	2.00
42054461--42054567	38	2.8	37	80	13	119	22	24	28	24	1.99
42054421--42054583	40	4.2	40	75	12	144	25	22	26	24	2.00
42056081--42056318	38	6.3	38	95	0	404	30	26	22	20	1.98
42058609--42058816	40	5.2	39	84	1	218	25	25	22	25	2.00
42058609--42058814	80	2.6	81	84	3	247	25	26	22	25	2.00
42066753--42066959	40	5.2	39	82	2	209	25	26	22	26	2.00
42066753--42066958	79	2.6	80	81	6	231	25	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42070271--42070313	20	2.2	20	86	0	59	69	0	23	6	1.12
42072218--42072263	19	2.5	19	86	10	60	58	0	0	41	0.98
42072256--42072384	20	6.6	19	71	12	66	64	1	6	27	1.27
42072273--42072365	30	3.2	28	77	15	98	64	1	6	27	1.25
42072535--42072594	10	6.3	10	83	12	74	26	1	1	70	1.07
42072534--42072624	18	5.3	17	72	16	64	28	1	2	68	1.09
42072535--42072596	19	3.3	18	78	13	72	27	1	1	69	1.07
42072780--42073007	84	2.7	85	81	6	266	35	10	15	39	1.82
42072780--42073007	83	2.7	85	78	11	261	35	10	15	39	1.82
42074717--42074767	23	2.2	24	85	3	68	54	0	3	41	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427