genome.fa.s11.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  157  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43281365--43281438	36	2.1	36	84	0	94	40	9	10	39	1.73
43291523--43291704	40	4.6	40	90	2	269	23	23	27	25	2.00
43296796--43296829	16	2.1	16	89	10	52	55	0	8	35	1.31
43297012--43297131	53	2.3	51	84	8	143	19	14	20	45	1.84
43297119--43297146	6	4.7	6	100	0	56	17	17	14	50	1.79
43297267--43297316	18	2.7	19	75	6	57	34	8	8	50	1.61
43297262--43297332	18	3.9	18	72	9	54	32	9	14	43	1.78
43297349--43297412	18	3.6	18	78	0	74	40	10	10	37	1.76
43297339--43297421	36	2.3	36	85	0	103	39	8	12	39	1.73
43304705--43304729	10	2.5	10	100	0	50	20	32	16	32	1.94
43311137--43311307	40	4.3	39	77	10	159	28	21	26	23	1.99
43323685--43323840	40	3.9	40	77	10	151	27	23	26	22	1.99
43323726--43323856	40	3.3	40	79	2	156	25	23	27	23	2.00
43327935--43328223	48	6.0	48	90	0	454	36	6	25	32	1.81
43327935--43328223	143	2.0	144	90	0	454	36	6	25	32	1.81
43328366--43328509	37	3.9	37	91	1	218	25	17	31	25	1.97
43330203--43330378	43	4.1	43	94	0	307	13	23	31	31	1.93
43330535--43330634	29	3.4	29	72	10	96	24	20	26	30	1.98
43330564--43330666	29	3.6	29	69	10	84	23	15	31	30	1.95
43330526--43330700	58	3.0	58	89	3	255	24	17	28	29	1.97
43334161--43334450	48	6.0	48	92	0	481	36	6	25	31	1.82
43334591--43334698	36	3.0	37	90	4	175	24	18	31	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43336389--43336605	43	5.1	43	93	1	366	12	23	31	32	1.92
43336762--43336860	29	3.4	29	72	10	94	24	18	26	31	1.97
43336759--43336924	58	2.9	57	84	2	217	24	17	27	30	1.97
43336791--43336889	29	3.4	29	68	15	78	24	13	29	33	1.93
43341389--43341677	48	6.0	48	90	0	445	35	5	25	32	1.80
43341389--43341677	96	3.0	96	93	0	490	35	5	25	32	1.80
43341818--43341927	37	3.0	37	94	0	193	23	19	31	25	1.98
43344420--43344569	43	3.5	42	78	7	142	34	27	15	23	1.95
43351776--43351983	40	5.2	40	84	0	218	25	22	25	25	2.00
43351777--43351983	80	2.6	80	83	4	247	25	22	26	25	2.00
43353721--43353873	46	3.3	46	74	15	161	30	30	18	20	1.97
43358114--43358255	40	3.5	40	83	1	124	27	23	26	22	1.99
43358153--43358281	40	3.2	39	84	6	152	24	22	27	25	2.00
43363213--43363384	93	1.8	93	93	2	301	28	30	20	20	1.98
43363206--43363381	46	3.8	46	79	14	200	29	30	20	19	1.97
43365441--43365516	27	2.8	27	91	0	116	26	18	19	35	1.95
43365457--43365902	27	16.6	27	83	2	463	30	9	20	39	1.84
43366222--43366282	28	2.2	28	84	0	77	26	39	14	19	1.90
43371257--43371339	17	4.2	21	83	12	61	37	18	8	36	1.81
43371274--43371352	19	4.2	19	90	9	126	36	16	8	37	1.80
43371274--43371345	36	1.9	38	94	5	130	37	15	8	38	1.77
43371271--43371362	36	2.6	35	79	14	109	38	15	9	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43371761--43372898	206	5.5	206	92	0	1862	29	22	17	30	1.97
43372860--43373202	44	7.8	43	76	8	273	27	24	16	31	1.97
43372876--43373201	88	3.7	88	78	6	365	28	24	17	30	1.97
43374053--43374112	23	2.5	23	82	12	68	3	15	1	80	0.93
43378310--43378825	48	11.0	48	84	6	468	27	13	26	31	1.94
43378669--43378823	42	3.7	42	90	3	233	30	14	25	29	1.95
43379503--43379554	26	2.1	26	83	16	67	46	0	23	30	1.53
43392941--43393002	28	2.1	28	91	5	97	50	6	1	41	1.38
43398981--43399127	39	3.8	39	82	0	195	37	11	9	41	1.74
43398970--43399127	78	2.0	78	91	0	253	37	11	8	41	1.72
43399051--43399112	18	3.3	18	70	12	52	38	9	4	46	1.58
43400612--43400702	37	2.4	37	96	1	164	25	32	18	23	1.97
43400742--43400845	48	2.2	48	98	0	199	32	27	5	33	1.81
43400837--43401219	49	7.9	49	94	2	648	28	27	9	34	1.88
43400837--43401220	96	4.0	96	96	1	696	28	27	9	34	1.88
43400837--43401221	145	2.7	145	93	3	675	28	27	9	34	1.88
43404802--43404863	28	2.1	28	91	5	97	50	6	1	41	1.38
43404956--43405019	19	3.5	19	70	20	64	56	4	3	35	1.36
43404960--43405031	35	2.1	35	100	0	144	54	5	2	37	1.39
43406382--43406445	21	3.0	23	77	8	55	32	31	25	10	1.90
43412701--43412873	93	1.9	93	95	0	310	27	30	21	20	1.98
43412694--43412869	46	3.8	46	80	10	205	28	30	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43412702--43412888	46	4.0	44	71	19	121	28	29	20	21	1.98
43415866--43416033	40	4.2	40	80	12	175	23	22	27	26	1.99
43415866--43416033	80	2.1	79	86	4	230	23	22	27	26	1.99
43423876--43424043	40	4.2	40	80	12	175	23	22	27	26	1.99
43423876--43424043	80	2.1	79	86	4	230	23	22	27	26	1.99
43426504--43426573	9	8.1	8	71	14	50	41	0	2	55	1.14
43426504--43426573	17	4.1	17	73	12	63	41	0	2	55	1.14
43428090--43428135	9	5.1	9	94	0	74	28	10	15	45	1.79
43428187--43428219	9	3.7	9	100	0	66	42	24	12	21	1.86
43433163--43433230	33	2.1	33	100	0	136	29	17	14	38	1.90
43437660--43437758	51	2.0	50	80	9	112	38	4	16	41	1.67
43449944--43449987	19	2.3	19	100	0	88	61	6	6	25	1.46
43450375--43450420	20	2.3	20	82	14	60	28	28	17	26	1.98
43453324--43453374	16	2.9	17	82	11	50	7	11	1	78	1.04
43453362--43453400	12	3.5	11	86	13	53	0	10	7	82	0.86
43460762--43460832	35	2.0	35	94	0	124	28	35	23	12	1.92
43464363--43464412	27	1.9	26	92	8	84	44	4	0	52	1.20
43468996--43469070	28	3.0	24	73	17	73	58	5	4	32	1.39
43484526--43484574	22	2.2	22	96	0	89	32	4	26	36	1.75
43484798--43484842	4	11.2	4	86	9	65	73	2	0	24	0.95
43486103--43486143	12	3.3	13	83	10	50	7	21	0	70	1.11
43486113--43486162	20	2.6	19	81	12	57	6	26	0	68	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43486113--43486156	21	2.2	20	87	4	61	6	25	0	68	1.14
43494269--43494347	40	2.0	40	82	0	95	20	16	32	30	1.94
43494224--43494719	144	3.5	143	80	4	534	32	17	21	28	1.96
43498225--43498277	27	2.0	27	85	3	72	28	11	20	39	1.87
43499539--43499685	48	3.1	47	88	1	213	38	7	23	29	1.82
43505365--43505414	24	2.1	24	96	0	91	32	16	8	44	1.76
43507741--43507910	46	3.7	46	77	15	199	21	21	28	28	1.99
43507737--43507905	92	1.8	92	93	2	295	21	21	28	27	1.99
43508771--43508813	20	2.2	20	82	0	50	51	2	2	44	1.27
43512506--43512689	40	4.6	39	77	6	147	28	23	26	22	1.99
43518207--43518271	28	2.3	28	97	0	121	32	3	18	46	1.65
43532045--43532094	12	3.8	13	82	12	59	68	0	4	28	1.08
43532045--43532095	3	17.0	3	76	15	52	66	0	3	29	1.09
43532152--43532188	4	9.2	4	87	0	56	70	2	2	24	1.14
43532352--43532394	3	14.3	3	100	0	86	67	0	0	32	0.91
43533231--43533295	32	2.1	30	82	5	76	7	12	9	70	1.33
43533959--43534071	44	2.6	44	79	0	127	26	22	15	36	1.93
43534170--43534268	43	2.3	44	87	1	137	37	21	13	28	1.91
43534170--43534400	44	5.2	44	80	2	196	33	20	15	31	1.93
43534212--43534400	89	2.1	88	85	0	243	31	19	16	31	1.95
43542443--43542487	19	2.3	20	85	7	58	44	6	22	26	1.77
43543638--43543796	42	3.6	42	80	11	176	28	28	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43543691--43543948	47	5.2	49	76	12	179	31	26	13	27	1.94
43547304--43547350	12	3.8	13	83	5	55	70	0	4	25	1.05
43547624--43547654	15	2.1	15	100	0	62	64	6	6	22	1.40
43549937--43549961	10	2.5	10	100	0	50	32	0	16	52	1.44
43558067--43558256	47	3.9	47	84	5	202	24	16	28	29	1.97
43558050--43558275	93	2.3	97	78	10	237	26	15	27	30	1.96
43564275--43564404	40	3.2	40	76	4	129	24	23	26	24	2.00
43575047--43575176	40	3.2	40	76	4	129	24	23	26	24	2.00
43598301--43598369	3	24.7	3	74	14	67	60	0	2	36	1.11
43602152--43602225	37	2.0	37	91	0	121	40	9	32	17	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427