Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  385  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111951251--111951368
62
1.9
62
81
10
143
21
13
13
51
1.75
111951542--111951590
22
2.3
21
82
3
53
32
4
6
57
1.42
111952025--111953891
88
20.7
88
70
12
651
46
13
9
30
1.75
111952036--111952956
182
5.2
176
74
10
616
46
13
11
28
1.77
111952940--111952965
9
2.9
9
100
0
52
34
0
7
57
1.27
111952852--111953052
96
2.1
99
79
10
218
45
12
10
31
1.76
111954115--111954172
25
2.3
25
93
3
98
39
5
8
46
1.57
111955970--111955999
6
5.0
6
100
0
60
0
50
16
33
1.46
111965573--111965613
22
2.0
20
90
9
64
73
12
9
4
1.24
111966041--111966076
18
2.1
18
89
5
56
41
0
25
33
1.55
111969081--111969188
44
2.4
44
87
3
144
29
23
13
33
1.93
111975213--111975320
44
2.4
44
87
3
144
29
23
13
33
1.93
111981269--111981425
56
2.8
54
81
8
181
20
18
33
28
1.96
111983883--111983948
22
3.0
23
77
6
82
18
22
19
39
1.92
111986015--111986129
33
3.5
33
81
1
133
28
24
14
32
1.95
111986036--111986168
65
2.0
66
85
1
178
29
22
15
33
1.94
111986039--111986218
65
2.7
66
78
3
175
30
22
11
35
1.90
111986040--111986201
33
4.9
33
79
3
148
30
21
12
35
1.91
111986154--111986216
33
1.9
33
90
0
99
31
20
9
38
1.85
112004228--112004262
17
2.0
17
88
5
52
77
2
0
20
0.90
112005409--112005453
3
15.0
3
100
0
90
66
0
33
0
0.92
112008290--112008328
16
2.5
15
84
12
51
56
0
2
41
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112008716--112008763
21
2.2
22
85
3
62
54
0
4
41
1.20
112013097--112013124
8
3.5
8
100
0
56
10
0
0
89
0.49
112014007--112014081
21
3.4
23
78
12
86
37
26
22
13
1.91
112014007--112014093
21
4.0
23
77
10
83
36
25
22
14
1.93
112016362--112016657
46
6.9
38
87
9
250
35
15
24
24
1.94
112016401--112016701
46
6.7
46
89
6
449
36
14
24
23
1.93
112016352--112016657
84
3.5
84
93
3
486
35
15
24
24
1.94
112016962--112017008
25
2.0
25
83
8
62
53
4
14
27
1.60
112020791--112020878
44
2.0
44
100
0
176
63
6
20
9
1.46
112024932--112024973
7
6.0
7
97
0
75
0
42
11
45
1.41
112037347--112037425
39
2.0
39
97
0
149
22
6
18
51
1.68
112042754--112042811
3
19.7
3
96
3
109
0
34
0
65
0.93
112043856--112043899
22
2.0
22
86
0
61
52
0
0
47
1.00
112043919--112043960
13
2.9
14
80
13
50
54
0
0
45
0.99
112043923--112043959
16
2.3
16
86
13
58
59
0
0
40
0.97
112043992--112044048
15
3.5
15
73
17
60
50
0
0
49
1.00
112044080--112044130
25
2.0
25
100
0
102
31
15
7
45
1.75
112044414--112044447
13
2.7
13
86
4
52
47
0
5
47
1.26
112044520--112044545
13
2.0
13
100
0
52
38
0
0
61
0.96
112047578--112047636
17
3.7
16
75
13
59
69
1
5
23
1.18
112047574--112047633
31
1.9
31
93
0
102
68
1
5
25
1.19
112048637--112048755
47
2.6
47
86
1
159
29
25
15
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112048786--112048895
31
3.5
31
92
3
177
26
30
16
27
1.97
112048871--112048999
50
2.5
51
86
5
181
25
22
15
36
1.93
112051791--112051850
30
2.0
30
93
0
102
25
1
15
58
1.46
112056300--112056337
19
2.1
19
85
5
51
63
2
7
26
1.35
112056525--112056549
13
1.9
13
100
0
50
72
0
16
12
1.13
112057231--112057287
3
19.0
3
96
0
105
33
1
0
64
1.04
112057668--112057711
6
7.5
6
89
5
63
18
22
13
45
1.84
112057837--112057883
18
2.6
18
77
12
51
44
10
14
29
1.79
112058537--112058611
37
2.0
37
97
0
141
44
0
13
42
1.43
112059810--112059879
33
2.1
33
84
5
88
18
44
11
25
1.83
112060093--112060248
82
1.9
84
87
2
235
29
5
8
55
1.54
112075744--112075771
3
9.3
3
100
0
56
67
0
32
0
0.91
112084586--112084696
47
2.4
47
83
6
145
35
22
16
26
1.95
112086112--112086174
30
2.0
32
87
6
94
47
7
12
31
1.70
112095771--112095802
13
2.5
13
100
0
64
78
0
6
15
0.95
112097089--112097136
15
3.3
15
82
2
62
37
2
12
47
1.53
112097624--112097682
23
2.5
23
94
2
100
11
6
35
45
1.67
112097792--112097832
19
2.2
19
87
12
59
46
0
24
29
1.53
112100603--112100670
36
1.9
35
82
8
84
58
1
1
38
1.16
112108702--112108741
3
13.3
3
100
0
80
67
0
0
32
0.91
112109898--112109927
11
2.6
11
94
5
51
80
3
6
10
1.01
112110575--112110905
138
2.4
138
90
1
502
30
21
16
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112110686--112111859
138
8.5
135
85
5
616
29
21
16
32
1.95
112110779--112112195
276
5.2
273
85
5
1564
29
21
16
32
1.95
112110576--112111543
320
3.0
319
91
1
1573
30
21
16
31
1.95
112110575--112111821
458
2.7
457
86
4
1747
30
21
16
31
1.95
112110576--112111683
320
3.4
314
83
7
1338
30
21
16
31
1.95
112111146--112112195
138
7.6
138
91
1
1606
29
21
16
32
1.95
112115514--112115599
41
2.1
40
80
2
91
65
9
3
22
1.37
112115582--112115650
28
2.5
27
79
6
75
62
0
7
30
1.22
112118659--112118690
7
4.7
7
96
3
57
25
12
0
62
1.30
112124493--112124539
23
2.0
23
100
0
94
42
8
8
40
1.66
112124724--112124816
17
5.6
17
69
18
52
43
0
2
54
1.12
112124751--112124805
19
3.1
19
82
10
71
29
0
3
67
1.08
112124751--112124808
18
3.4
16
77
11
62
32
0
3
63
1.11
112127087--112127153
3
22.3
3
100
0
134
0
32
0
67
0.91
112127138--112127387
45
5.4
45
64
20
127
18
18
14
48
1.82
112127132--112127434
51
6.2
50
68
16
188
18
19
14
47
1.83
112127316--112127342
3
9.0
3
100
0
54
0
33
0
66
0.92
112127129--112127525
189
2.1
184
93
2
679
17
19
15
47
1.83
112127127--112127528
186
2.1
186
95
1
714
17
20
14
47
1.82
112127273--112127434
54
3.1
54
81
2
177
17
19
14
48
1.81
112127502--112127528
3
9.0
3
100
0
54
0
33
0
66
0.92
112127570--112127632
12
4.6
14
72
18
53
11
36
22
30
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112127590--112127641
3
17.3
3
83
0
59
9
34
23
32
1.87
112127581--112127641
12
5.1
12
85
0
68
9
36
22
31
1.87
112127581--112127641
18
3.4
18
88
0
86
9
36
22
31
1.87
112127574--112127632
9
6.6
9
92
0
82
10
37
22
30
1.87
112127676--112127737
3
20.7
3
100
0
124
32
33
0
33
1.58
112131752--112131790
20
1.9
21
84
5
53
33
25
15
25
1.95
112132634--112132674
21
2.0
21
85
9
57
58
0
2
39
1.11
112132967--112133003
18
2.0
20
84
10
51
62
10
0
27
1.28
112133091--112133151
30
2.0
30
87
0
86
52
9
4
32
1.56
112133249--112133282
6
5.7
6
85
0
50
79
0
0
20
0.73
112159023--112159140
41
3.1
41
60
28
98
32
17
28
21
1.96
112158991--112159154
71
2.3
71
100
0
328
35
17
28
18
1.94
112160745--112161009
46
6.0
45
84
8
328
22
23
15
39
1.91
112160923--112160998
38
2.0
38
100
0
152
21
26
18
34
1.96
112163142--112163193
11
4.7
11
76
9
52
63
3
0
32
1.12
112171892--112172020
50
2.5
51
89
2
197
35
16
22
25
1.94
112171996--112172138
31
4.6
31
90
3
216
29
19
25
25
1.99
112172256--112172418
42
3.7
43
84
8
188
29
14
26
29
1.95
112179056--112179156
39
2.6
40
87
3
118
23
30
24
20
1.99
112179074--112179160
39
2.2
39
91
0
138
26
29
21
21
1.99
112192849--112192916
35
2.0
34
88
5
102
33
13
19
33
1.90
112193859--112193898
2
21.0
2
85
10
57
50
2
0
47
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112194765--112194792
14
2.0
14
100
0
56
50
7
7
35
1.57
112195032--112195067
17
2.1
17
90
10
56
36
0
0
63
0.94
112197072--112197105
17
2.0
17
100
0
68
47
11
0
41
1.40
112197076--112197114
17
2.3
17
90
0
60
51
15
0
33
1.44
112201637--112201672
19
1.9
19
88
5
56
52
5
2
38
1.39
112202037--112202076
21
1.9
21
89
0
62
52
12
12
22
1.72
112210921--112210958
20
1.9
20
89
10
60
7
7
7
76
1.17
112211928--112211955
5
5.6
5
100
0
56
21
0
0
78
0.75
112215358--112215533
46
3.8
46
78
10
196
22
21
27
28
1.99
112215355--112215526
93
1.8
93
92
0
290
22
21
27
27
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427