genome.fa.s11.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  123  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32508561--32508663	20	5.0	20	67	15	68	40	3	0	54	1.25
32509006--32509064	20	3.0	21	78	12	70	59	1	0	38	1.08
32508979--32509038	23	2.6	23	74	12	59	50	0	0	50	1.00
32509021--32509078	12	5.1	12	73	12	50	60	1	0	37	1.07
32509009--32509090	19	4.5	19	71	23	70	59	1	0	39	1.05
32509043--32509077	13	2.6	14	91	8	56	65	0	0	34	0.93
32509025--32509089	33	2.0	32	90	3	103	61	1	0	36	1.05
32509168--32509251	19	4.9	17	70	24	52	76	1	7	15	1.06
32509193--32509250	19	3.0	20	73	14	59	77	0	8	13	0.98
32512346--32512505	29	5.5	30	88	8	222	33	13	25	27	1.94
32512346--32512505	59	2.8	57	89	4	223	33	13	25	27	1.94
32520265--32520424	29	5.5	30	88	8	222	33	13	25	27	1.94
32520265--32520424	59	2.8	57	89	4	223	33	13	25	27	1.94
32527332--32527514	40	4.6	40	82	3	181	23	26	22	27	2.00
32532656--32533232	240	2.4	241	97	1	1088	33	12	18	35	1.88
32533277--32533327	10	5.4	10	75	13	54	35	17	0	47	1.48
32533270--32533323	27	2.0	27	100	0	108	40	14	0	44	1.46
32533371--32533418	23	2.1	23	88	11	73	37	16	12	33	1.86
32536878--32536933	19	3.0	19	86	2	78	25	25	25	25	2.00
32536966--32537000	18	1.9	18	94	0	61	31	0	42	25	1.55
32537954--32537997	15	3.0	14	90	6	61	31	2	20	45	1.64
32538168--32538223	29	1.9	29	92	0	94	19	8	35	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32538746--32538962	41	5.3	40	81	7	226	23	21	19	35	1.96
32538746--32538973	81	2.8	80	80	10	241	24	22	18	34	1.96
32542921--32542958	19	2.0	19	94	0	67	34	10	23	31	1.89
32543226--32543261	2	18.0	2	100	0	72	50	0	0	50	1.00
32544159--32544184	7	3.7	7	100	0	52	15	0	0	84	0.62
32545329--32545381	21	2.3	25	78	15	60	9	30	0	60	1.28
32548540--32548572	11	3.0	11	95	0	57	69	0	0	30	0.88
32548540--32548573	15	2.3	15	90	10	52	70	0	0	29	0.87
32548659--32548702	20	2.3	19	88	4	61	65	2	13	18	1.36
32549107--32549139	15	2.2	15	94	0	57	3	24	3	69	1.16
32553654--32553695	20	2.3	19	84	12	52	69	4	4	21	1.26
32557559--32557619	30	2.0	30	87	0	86	31	22	8	37	1.84
32559249--32559278	16	1.9	15	93	6	51	13	3	0	83	0.77
32562931--32562957	2	13.5	2	100	0	54	48	0	0	51	1.00
32564293--32564337	18	2.6	18	83	13	58	51	4	0	44	1.21
32564326--32564359	16	2.1	17	88	5	52	41	0	0	58	0.98
32566857--32566959	51	2.0	51	100	0	206	33	19	18	29	1.96
32571635--32571687	21	2.4	23	87	12	76	49	0	0	50	1.00
32572409--32572491	43	1.9	43	90	4	132	26	25	19	28	1.98
32572421--32572513	43	2.1	43	80	2	105	29	24	16	30	1.96
32572524--32572571	22	2.2	22	85	10	64	39	2	0	58	1.10
32574918--32574961	23	1.9	23	90	0	70	47	20	9	22	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32576617--32576656	9	4.3	9	87	6	53	12	5	0	82	0.82
32576622--32576658	9	4.0	9	89	6	56	10	8	0	81	0.89
32576743--32576770	7	4.0	7	100	0	56	57	0	0	42	0.99
32576775--32576809	7	4.9	7	86	6	52	17	0	0	82	0.66
32577942--32578130	41	4.7	41	94	1	319	21	27	22	28	1.99
32577969--32578195	41	5.5	41	88	2	147	21	25	21	32	1.98
32578920--32579030	52	2.2	52	98	1	215	42	16	7	34	1.75
32579792--32579826	2	17.5	2	100	0	70	48	0	0	51	1.00
32579968--32580003	2	18.0	2	100	0	72	50	0	0	50	1.00
32581016--32581061	22	2.0	23	84	12	60	58	0	8	32	1.28
32582743--32582814	36	2.0	36	100	0	144	22	11	11	55	1.66
32588304--32588437	41	3.1	41	65	22	103	35	24	14	25	1.93
32588283--32588503	88	2.5	88	93	0	379	31	25	15	27	1.96
32588537--32588747	45	4.8	45	81	5	243	27	27	15	29	1.96
32588537--32588747	90	2.4	85	84	3	269	27	27	15	29	1.96
32589773--32589811	8	4.6	8	81	12	51	0	20	0	79	0.73
32589772--32589815	18	2.4	18	85	10	63	0	18	0	81	0.68
32596184--32596222	16	2.4	16	82	0	60	5	17	20	56	1.60
32597001--32597077	27	2.7	29	80	8	95	66	0	29	3	1.10
32597032--32597077	16	2.8	17	83	12	60	71	0	26	2	0.97
32597954--32597982	15	1.9	15	100	0	58	58	0	0	41	0.98
32604212--32604301	22	4.0	21	69	24	58	56	1	6	35	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32604239--32604324	25	3.6	25	74	14	83	56	1	6	34	1.34
32604494--32604553	3	19.7	3	77	16	61	63	1	0	35	1.05
32604509--32604562	21	2.6	21	85	8	74	66	1	1	29	1.12
32604494--32604551	29	2.0	30	83	10	75	63	1	0	34	1.04
32604515--32604550	17	2.1	18	89	5	56	66	2	0	30	1.06
32604714--32604820	3	35.0	3	70	15	69	61	2	4	30	1.30
32606515--32606819	87	3.5	87	79	6	287	36	19	15	28	1.93
32606742--32607068	74	4.2	73	72	16	300	37	20	14	27	1.92
32606813--32606974	87	1.9	87	92	0	270	37	19	14	27	1.91
32606688--32607533	162	5.3	159	86	4	1060	36	19	15	28	1.93
32606900--32607068	75	2.3	75	87	6	272	36	19	15	28	1.92
32607048--32607082	14	2.5	14	90	0	52	62	5	14	17	1.49
32607062--32607230	74	2.3	74	84	9	220	39	18	16	26	1.91
32607210--32607244	14	2.5	14	90	0	61	57	5	20	17	1.60
32607136--32607301	90	1.9	88	91	5	271	35	18	18	27	1.94
32606690--32607547	323	2.7	316	85	6	1124	37	19	15	27	1.92
32607392--32607533	73	1.9	73	89	0	221	33	20	17	28	1.95
32619057--32619113	28	2.0	28	93	0	96	50	5	12	31	1.62
32619685--32619735	18	2.7	20	76	17	54	58	7	1	31	1.37
32619892--32619940	20	2.5	20	81	15	57	57	0	10	32	1.32
32620201--32620255	24	2.3	24	84	3	67	50	5	5	38	1.48
32620515--32620612	3	32.0	3	70	17	60	59	3	5	32	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32620559--32620618	24	2.5	24	81	10	70	60	5	5	30	1.40
32620572--32620607	19	1.9	18	94	5	63	63	5	2	27	1.30
32621781--32621839	23	2.6	23	88	0	91	23	3	35	37	1.72
32622412--32622458	6	7.8	6	83	7	51	0	59	0	40	0.97
32622412--32622454	12	3.7	12	90	6	70	0	58	0	41	0.98
32622411--32622450	17	2.4	17	91	0	62	0	60	0	40	0.97
32622412--32622450	11	3.5	11	92	3	60	0	58	0	41	0.98
32624634--32624713	33	2.4	33	93	0	133	50	23	5	21	1.68
32625462--32625576	60	1.9	60	98	0	221	35	18	17	28	1.93
32644639--32644722	29	2.9	29	82	5	91	25	25	29	20	1.99
32644829--32644868	20	2.0	20	90	4	64	45	7	10	37	1.66
32648174--32648274	42	2.4	42	83	3	132	19	21	29	28	1.98
32652982--32653029	13	3.8	13	86	10	55	52	6	0	41	1.27
32655671--32655952	130	2.2	130	83	2	343	40	14	16	29	1.88
32656139--32656180	18	2.6	15	80	20	57	7	33	11	47	1.68
32656145--32656180	18	2.0	18	100	0	72	5	33	11	50	1.61
32657063--32657137	26	2.8	26	89	2	114	34	14	10	40	1.81
32657279--32657329	6	8.5	6	91	0	84	15	15	0	68	1.21
32659742--32659785	22	2.0	22	90	0	70	40	0	2	56	1.11
32662508--32662689	48	3.8	49	86	4	219	28	15	26	30	1.96
32665657--32665735	28	2.8	29	82	3	99	58	13	7	20	1.60
32665686--32665751	29	2.3	28	81	2	69	57	9	9	24	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32666103--32666145	17	2.4	18	88	11	70	18	44	20	16	1.87
32669434--32669615	39	4.6	40	82	4	181	27	22	26	23	2.00
32677517--32677698	39	4.6	40	82	4	181	27	22	26	23	2.00
32686030--32686105	40	1.9	40	81	5	91	39	31	13	15	1.86
32690800--32690838	21	1.9	20	89	5	60	69	0	2	28	1.02
32693313--32693431	59	2.0	59	100	0	238	39	18	15	26	1.90
32694218--32694266	11	4.4	11	80	12	55	53	28	2	16	1.54
32694947--32695042	42	2.3	42	81	5	104	33	20	18	27	1.96
32695663--32695691	13	2.2	13	100	0	58	48	24	0	27	1.51
32695787--32695825	20	2.0	19	85	5	51	58	17	7	15	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427