genome.fa.s11.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  158  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43606600--43606634	18	2.1	17	89	10	54	45	2	14	37	1.59
43609592--43609717	40	3.2	40	97	0	243	21	23	29	25	1.99
43615399--43615558	29	5.5	29	82	4	171	25	31	16	26	1.97
43622820--43622892	29	2.5	29	93	0	101	26	31	16	26	1.96
43626070--43626246	50	3.5	50	90	0	264	36	15	20	26	1.93
43626222--43626401	31	5.8	31	86	2	245	27	19	26	26	1.99
43626423--43626634	47	4.6	47	84	8	215	29	15	25	29	1.95
43626514--43626659	42	3.3	42	84	8	168	30	15	25	28	1.95
43627325--43627375	23	2.2	23	96	0	93	45	7	13	33	1.73
43631103--43631142	21	1.9	21	85	10	55	30	17	15	37	1.90
43636219--43636425	40	5.2	40	82	0	198	26	21	26	25	2.00
43636220--43636425	80	2.6	80	82	1	225	26	21	26	25	2.00
43644195--43644402	40	5.2	39	82	5	211	25	22	26	25	2.00
43649665--43649762	49	2.0	49	91	0	160	34	14	18	32	1.91
43650180--43650209	15	2.0	15	93	0	51	43	0	30	26	1.55
43652741--43653041	39	7.7	40	85	6	341	28	27	23	20	1.99
43652812--43653025	118	1.8	118	90	0	347	28	28	23	19	1.98
43656780--43656824	4	10.8	4	86	9	63	48	0	2	48	1.13
43663153--43663202	20	2.6	19	87	12	68	50	12	0	38	1.40
43663174--43663208	15	2.2	16	90	5	54	45	17	0	37	1.48
43665675--43665739	29	2.2	29	97	0	121	29	16	27	26	1.97
43665840--43665870	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43673657--43673729	29	2.5	29	95	0	128	27	16	30	26	1.97
43688293--43688359	24	2.8	24	93	2	107	43	19	22	14	1.87
43688909--43688949	21	2.0	21	85	9	57	39	19	0	41	1.52
43695702--43695747	19	2.2	20	85	14	67	26	10	17	45	1.81
43696458--43696483	5	5.2	5	100	0	52	80	0	0	19	0.71
43697820--43697931	10	11.7	9	69	19	57	30	2	4	62	1.29
43697820--43697930	29	3.8	29	69	21	81	29	2	4	63	1.28
43698670--43698695	10	2.6	10	100	0	52	38	7	0	53	1.30
43698768--43698821	29	2.0	28	82	10	67	55	1	1	40	1.21
43699513--43699539	8	3.4	8	100	0	54	55	0	11	33	1.35
43716694--43716863	35	4.9	35	80	6	184	28	14	22	34	1.94
43727404--43727576	35	5.0	35	82	1	204	28	15	22	32	1.95
43734158--43734201	23	1.9	23	95	0	79	50	4	2	43	1.35
43746747--43746924	48	3.7	48	81	5	189	25	19	32	21	1.97
43746750--43746924	96	1.8	96	83	4	237	26	18	32	22	1.97
43749975--43750009	17	2.1	17	100	0	70	42	17	5	34	1.73
43757198--43757351	40	3.8	40	80	1	157	26	21	26	25	1.99
43757989--43758185	97	2.0	99	92	7	326	28	10	26	34	1.90
43765147--43765300	40	3.8	40	79	1	148	26	20	26	25	1.99
43769434--43770464	517	2.0	517	90	1	1640	33	20	14	32	1.92
43770298--43770446	56	2.6	56	72	6	140	32	20	16	30	1.95
43778415--43778621	40	5.2	40	84	1	218	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43778416--43778621	79	2.6	77	83	5	241	25	22	26	25	2.00
43790100--43790148	17	2.8	18	74	22	50	24	18	22	34	1.96
43790964--43791114	40	3.8	40	79	6	155	26	23	27	23	2.00
43791000--43791130	40	3.3	40	79	4	149	24	22	26	25	2.00
43793686--43793893	40	5.2	40	83	2	211	25	23	25	25	2.00
43793687--43793893	80	2.6	80	82	6	240	25	23	26	25	2.00
43796311--43796769	226	2.0	226	98	0	893	35	18	9	36	1.83
43796888--43797036	56	2.6	58	79	12	175	30	20	18	30	1.96
43798674--43798726	24	2.2	24	86	6	72	52	7	11	28	1.64
43798833--43798896	18	3.6	18	72	8	58	29	18	23	28	1.98
43817422--43817585	71	2.3	71	100	0	328	18	28	17	35	1.94
43817422--43817619	71	2.8	70	91	3	258	20	28	17	33	1.95
43821463--43821540	29	2.7	29	83	0	102	26	17	33	21	1.96
43830185--43830350	44	3.9	43	75	11	144	24	19	24	31	1.98
43830192--43830358	43	3.9	43	79	4	142	25	18	24	31	1.97
43830236--43830332	42	2.3	42	81	1	122	27	19	22	29	1.98
43831797--43832043	127	2.0	126	93	2	424	38	3	5	51	1.43
43836782--43836918	33	4.3	33	76	10	122	30	25	19	24	1.98
43837056--43837154	27	3.8	26	79	10	94	37	21	20	21	1.95
43837290--43837433	27	5.4	27	85	0	182	27	20	18	34	1.95
43837427--43837627	27	7.4	27	79	8	178	33	10	17	37	1.85
43837427--43837626	81	2.5	81	83	1	258	34	10	17	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43837441--43837631	54	3.5	53	79	7	206	33	9	18	37	1.84
43841593--43841692	33	3.0	33	82	2	112	33	27	17	23	1.96
43841658--43841711	28	1.9	28	84	0	72	33	25	18	22	1.97
43841861--43841938	26	2.9	27	73	5	68	33	21	23	21	1.97
43842096--43842282	27	6.9	27	88	0	275	24	19	20	35	1.95
43842273--43842439	27	6.2	26	74	10	149	31	10	20	37	1.87
43842096--43842321	81	2.8	81	83	2	213	24	18	20	36	1.95
43842276--43842433	81	2.0	81	84	2	210	32	11	18	37	1.86
43842275--43842433	54	2.9	54	83	3	187	32	11	18	37	1.87
43846865--43846967	29	3.5	29	90	7	172	37	14	23	24	1.92
43846855--43846966	59	1.9	59	94	0	197	39	14	21	25	1.91
43854364--43854496	59	2.2	60	90	1	205	35	14	24	25	1.93
43854394--43854496	29	3.5	29	96	2	188	36	14	24	24	1.93
43857308--43857561	46	5.5	45	77	12	216	26	19	30	23	1.98
43857308--43857523	94	2.3	92	83	1	261	25	20	31	22	1.98
43857308--43857604	136	2.2	139	82	8	349	26	19	30	24	1.98
43867563--43867604	13	3.5	12	84	9	50	61	14	11	11	1.56
43878092--43878393	27	10.8	27	78	8	246	29	23	7	38	1.83
43878119--43878393	54	4.9	54	77	8	271	29	23	7	39	1.82
43878224--43878304	37	2.2	38	88	2	119	23	29	7	39	1.82
43878167--43878349	91	2.0	91	86	0	258	27	24	7	40	1.81
43878140--43878385	118	2.1	118	86	2	341	27	23	8	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43878119--43878393	145	1.9	145	87	0	406	29	23	7	39	1.82
43878291--43878594	27	11.2	26	76	10	94	38	20	7	33	1.81
43878261--43878420	81	2.0	81	83	2	205	31	21	8	38	1.82
43878372--43878518	54	2.7	53	79	10	163	40	22	6	30	1.78
43878264--43878521	81	3.2	80	76	7	198	36	22	7	34	1.82
43878549--43878600	27	1.9	27	88	7	79	40	13	11	34	1.81
43878645--43878745	27	3.7	27	85	5	116	33	21	23	20	1.97
43879901--43879948	25	1.9	25	91	0	78	35	25	14	25	1.94
43879992--43880075	20	4.2	20	95	0	150	34	11	21	32	1.90
43879996--43880070	11	7.4	11	68	17	63	36	13	20	30	1.91
43880126--43880315	25	7.8	24	84	5	217	25	20	24	29	1.99
43880121--43880311	74	2.6	75	81	9	202	26	20	24	28	1.99
43880506--43880569	31	2.1	31	87	0	92	37	15	21	25	1.93
43883398--43883532	26	5.2	26	87	5	168	28	25	6	39	1.81
43883398--43883665	27	9.8	27	78	12	235	28	23	7	39	1.82
43883499--43883568	36	2.0	35	85	2	95	24	28	7	40	1.81
43883532--43883692	53	3.0	53	79	3	171	31	21	8	38	1.84
43883535--43883692	80	2.0	80	84	2	210	32	20	8	38	1.83
43883617--43883868	27	9.3	27	76	8	136	39	20	8	31	1.82
43883937--43884016	27	3.0	27	88	3	108	33	20	25	21	1.97
43885258--43885341	20	4.2	20	95	0	150	34	11	21	32	1.90
43885262--43885336	11	7.4	11	68	17	63	36	13	20	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43885392--43885576	23	7.8	24	86	7	247	26	21	22	29	1.99
43885767--43885830	31	2.1	31	90	0	101	35	15	23	25	1.94
43891227--43891271	21	2.1	21	100	0	90	51	0	8	40	1.33
43892272--43892405	40	3.3	39	82	3	160	13	16	28	41	1.86
43896237--43896415	48	3.7	48	90	0	250	32	27	21	18	1.97
43898316--43898582	24	11.1	24	98	0	480	36	25	17	20	1.94
43906348--43906613	24	11.1	24	97	0	462	36	25	18	20	1.95
43906354--43906613	143	1.8	143	95	2	450	35	25	18	20	1.95
43912040--43912078	21	1.9	20	84	5	51	56	2	5	35	1.35
43914660--43914750	42	2.1	43	86	6	123	31	13	24	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427