Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  364  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105650707--105650828
43
2.8
43
80
7
131
29
27
17
25
1.97
105650971--105651011
2
20.5
2
100
0
82
51
0
0
48
1.00
105655474--105655557
26
3.2
26
96
0
150
33
4
25
36
1.77
105659715--105659772
22
2.6
22
91
0
89
8
3
32
55
1.47
105659701--105659779
11
7.1
11
69
5
52
7
5
29
58
1.47
105659701--105659791
22
4.1
22
79
1
83
7
6
28
57
1.52
105660459--105660532
31
2.4
31
77
6
78
18
0
13
67
1.23
105665052--105665088
14
2.6
14
95
0
65
29
0
18
51
1.47
105666145--105666419
96
2.9
96
83
2
320
29
18
27
24
1.98
105666145--105666418
48
5.7
48
78
7
236
28
18
27
24
1.98
105666706--105666745
20
2.2
17
86
13
53
30
0
17
52
1.45
105672574--105672628
25
2.2
25
96
0
101
14
25
20
40
1.90
105677016--105677174
27
5.9
27
82
11
184
34
23
24
17
1.96
105677034--105677174
54
2.6
54
93
2
239
34
24
24
16
1.95
105678762--105678869
26
4.2
26
95
0
198
36
25
6
31
1.82
105685103--105685261
27
5.9
27
82
11
184
34
23
24
17
1.96
105685121--105685261
54
2.6
54
93
2
239
34
24
24
16
1.95
105686589--105686648
23
2.6
22
71
21
52
48
3
18
30
1.64
105686757--105686863
45
2.4
45
88
0
160
18
20
20
40
1.92
105687104--105687180
18
4.3
18
80
1
66
35
9
15
40
1.79
105687561--105687667
25
4.2
25
93
2
180
33
4
24
37
1.76
105689148--105689195
24
2.0
25
84
12
64
39
20
14
25
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105689443--105689728
136
2.1
137
96
0
529
25
19
24
31
1.98
105691027--105691063
20
1.9
20
88
5
58
40
0
8
51
1.32
105693210--105693721
46
11.0
46
88
3
610
40
15
24
20
1.91
105693210--105693748
138
3.9
138
88
4
695
40
15
23
20
1.90
105693225--105693726
237
2.1
234
86
3
688
40
15
24
20
1.91
105696394--105696432
11
3.5
11
82
3
51
33
0
2
64
1.08
105698511--105699021
46
11.0
46
86
4
576
40
15
23
20
1.91
105698526--105699026
238
2.1
232
84
5
625
40
15
23
20
1.91
105700877--105700986
55
2.0
55
100
0
220
38
9
14
38
1.78
105702221--105702304
26
3.2
26
96
0
150
33
4
25
36
1.77
105703919--105704082
26
6.2
27
85
5
201
18
24
21
34
1.96
105703917--105704082
52
3.1
53
87
5
228
18
24
22
34
1.96
105708030--105708163
26
5.2
26
94
3
218
33
5
24
36
1.78
105709777--105709939
26
6.2
27
85
7
201
18
23
22
34
1.96
105709775--105709939
52
3.1
54
87
6
223
18
23
23
35
1.96
105713738--105713872
37
3.6
36
71
13
103
57
2
1
37
1.23
105713850--105713899
22
2.3
22
85
0
64
62
4
2
32
1.25
105714057--105714125
19
3.5
21
74
18
67
27
8
2
60
1.40
105715056--105715123
22
3.0
22
81
10
84
41
19
23
16
1.90
105716190--105716252
6
9.7
6
77
16
63
1
20
1
76
0.96
105716190--105716252
14
4.8
12
78
16
63
1
20
1
76
0.96
105716226--105716264
19
2.1
19
90
9
62
2
12
5
79
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105718703--105718742
12
3.2
13
89
10
57
55
0
0
45
0.99
105719026--105719210
88
2.1
86
84
7
232
33
9
16
40
1.80
105720042--105720166
46
2.7
46
86
2
171
20
23
12
43
1.86
105722301--105722342
19
2.2
19
86
0
57
66
0
2
30
1.04
105723657--105723697
22
1.9
22
85
5
57
39
9
4
46
1.58
105725508--105725538
14
2.3
13
94
5
53
58
0
0
41
0.98
105726826--105726853
2
14.0
2
100
0
56
50
0
0
50
1.00
105728134--105728164
2
15.5
2
100
0
62
48
0
0
51
1.00
105732599--105732770
75
2.4
75
83
8
205
32
11
23
33
1.90
105732602--105732768
35
4.6
35
84
9
167
32
11
23
32
1.90
105732698--105732768
36
2.0
35
88
2
106
33
14
21
30
1.92
105736596--105736634
21
1.9
20
84
5
51
58
5
17
17
1.56
105742649--105742682
16
2.1
16
89
10
52
73
2
0
23
0.97
105742710--105742740
15
2.1
15
93
0
53
58
0
0
41
0.98
105742839--105742881
11
3.9
11
75
0
50
48
9
20
20
1.77
105743751--105743778
5
5.6
5
100
0
56
39
0
0
60
0.97
105743822--105743856
17
1.9
18
88
11
54
68
0
31
0
0.90
105744183--105744389
103
2.0
103
99
0
405
43
3
17
34
1.68
105744761--105744894
37
3.4
40
73
9
105
23
15
26
34
1.95
105744761--105744894
40
3.4
39
70
13
105
23
15
26
34
1.95
105750789--105750826
19
2.1
19
90
9
62
76
0
23
0
0.79
105751426--105751464
3
13.0
3
94
0
69
33
2
0
64
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105754146--105754183
19
2.0
19
94
0
67
28
2
5
63
1.30
105754147--105754186
10
4.2
9
84
9
53
30
2
2
65
1.19
105755272--105755355
26
3.2
26
93
0
141
32
4
26
36
1.77
105761528--105761570
21
2.0
21
95
0
77
41
18
25
13
1.88
105763712--105763741
6
5.0
6
100
0
60
16
33
0
50
1.46
105763843--105764232
192
2.0
193
97
0
737
28
21
17
32
1.96
105768803--105768842
15
2.4
16
84
16
55
37
2
0
60
1.11
105768813--105768844
15
2.1
15
100
0
64
40
0
0
59
0.97
105769029--105769616
235
2.5
239
80
5
665
37
8
8
45
1.65
105770578--105770627
5
10.2
5
91
4
84
42
2
0
56
1.11
105777492--105777528
14
2.4
16
86
8
51
48
0
0
51
1.00
105781189--105781297
26
4.2
26
92
1
175
33
5
23
36
1.78
105782778--105782830
26
2.0
26
85
7
72
37
22
15
24
1.92
105786973--105787080
25
4.2
26
92
3
175
33
5
24
37
1.79
105786973--105787080
51
2.1
51
94
0
189
33
5
24
37
1.79
105789820--105790216
126
3.2
125
85
3
514
38
14
16
29
1.89
105793266--105793313
25
1.9
25
83
8
62
56
6
0
37
1.25
105793263--105793318
25
2.3
24
76
11
60
50
5
0
44
1.25
105793737--105793780
18
2.4
18
88
0
61
40
9
29
20
1.83
105798788--105798821
16
2.2
16
89
5
52
41
5
0
52
1.25
105800960--105800999
19
2.1
19
86
9
55
35
5
2
57
1.34
105802106--105802176
37
1.9
37
88
8
110
22
29
11
36
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105808648--105808683
18
2.0
18
100
0
72
22
11
11
55
1.66
105821719--105821780
29
2.1
29
85
5
81
30
6
0
62
1.20
105821786--105821852
9
7.2
9
72
23
50
31
4
1
62
1.24
105821719--105821848
29
4.6
27
72
15
52
33
5
0
60
1.25
105821810--105821968
9
16.7
10
64
24
60
37
3
1
57
1.25
105822582--105822615
14
2.2
16
90
10
54
44
2
0
52
1.16
105822560--105822601
20
2.2
20
86
4
59
40
0
2
57
1.12
105824288--105824319
2
16.0
2
93
0
55
50
3
0
46
1.17
105824422--105824522
52
1.9
52
94
4
177
37
1
4
55
1.33
105836864--105837015
40
3.8
40
83
5
164
23
28
22
26
1.99
105844851--105845001
40
3.8
40
80
6
146
23
28
21
26
1.99
105844898--105844997
39
2.5
39
87
4
130
24
30
22
24
1.99
105853164--105853208
12
3.8
12
96
0
81
53
0
11
35
1.37
105855405--105855443
2
19.5
2
100
0
78
48
0
0
51
1.00
105870325--105870349
12
2.1
12
100
0
50
60
8
8
24
1.52
105873895--105873953
22
2.8
21
85
12
77
40
1
0
57
1.09
105876759--105876800
20
2.1
20
95
0
75
42
9
7
40
1.65
105884513--105884538
12
2.2
12
100
0
52
0
23
7
69
1.14
105884505--105884557
17
3.4
17
75
24
71
9
22
5
62
1.47
105889118--105889157
19
2.0
20
90
4
64
52
2
0
45
1.14
105892284--105892317
17
2.0
17
88
0
50
44
0
14
41
1.45
105893862--105893891
14
2.1
14
93
0
51
16
0
36
46
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105898991--105899049
29
2.0
29
96
0
109
42
23
8
25
1.82
105899734--105899843
26
4.2
26
94
0
184
33
5
24
36
1.79
105901315--105901367
26
2.0
26
85
7
72
37
22
15
24
1.92
105905461--105905570
26
4.2
26
94
0
184
33
5
24
36
1.79
105907042--105907094
26
2.0
26
85
7
72
37
22
15
24
1.92
105912409--105912467
26
2.4
24
83
8
73
66
3
0
30
1.08
105918001--105918029
2
14.5
2
100
0
58
0
0
48
51
1.00
105918703--105918742
21
1.9
21
94
0
71
27
0
5
67
1.11
105921570--105921673
34
3.0
34
79
9
95
34
13
11
40
1.81
105922320--105922351
16
2.0
16
100
0
64
56
0
6
37
1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427