genome.fa.s11.2.7.7.80.10.50.1000.426.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  426  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124120158--124120775	256	2.4	256	93	1	1038	35	23	14	26	1.94
124125797--124125832	12	3.0	12	95	0	63	41	5	25	27	1.77
124127507--124127608	37	2.6	38	75	20	95	57	4	4	32	1.41
124128393--124128441	23	2.2	23	96	3	91	6	0	20	73	1.04
124130976--124131016	11	3.7	11	84	12	57	29	0	48	21	1.50
124131142--124131381	77	3.0	81	92	5	416	17	15	12	54	1.72
124131368--124131428	30	2.0	30	90	0	95	24	3	36	36	1.72
124131998--124132028	15	2.1	15	93	0	53	12	3	22	61	1.46
124132495--124132548	21	2.5	21	82	8	56	53	0	5	40	1.24
124134233--124134333	47	2.1	49	83	7	127	55	1	5	36	1.36
124135970--124136019	19	2.6	19	75	12	57	16	0	6	78	0.95
124135982--124136046	25	2.9	23	84	13	75	26	0	7	66	1.19
124147335--124147362	5	5.6	5	100	0	56	21	17	17	42	1.89
124147339--124147419	5	16.2	5	88	0	81	32	22	8	37	1.84
124154277--124154586	154	2.0	156	97	1	588	39	11	24	25	1.88
124155446--124155497	24	2.2	24	86	6	70	26	0	1	71	0.97
124155435--124155486	18	2.9	16	83	16	59	21	3	0	75	0.97
124155448--124155494	12	3.9	12	82	17	53	23	0	2	74	0.93
124160427--124160458	3	10.7	3	93	0	55	65	31	3	0	1.08
124181426--124181463	15	2.6	15	87	4	51	21	23	2	52	1.59
124192258--124192503	81	3.0	81	96	0	447	37	12	13	36	1.83
124198085--124198173	35	2.5	36	89	9	137	46	1	5	47	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124198085--124198184	35	2.8	36	86	8	134	47	1	6	46	1.34
124200509--124200539	12	2.6	12	94	0	53	77	0	22	0	0.77
124200481--124200562	42	2.0	42	92	0	137	64	9	24	1	1.31
124201449--124201517	31	2.3	30	87	7	95	21	8	20	49	1.76
124203229--124203276	14	3.4	14	82	5	60	64	0	2	33	1.05
124203225--124203273	22	2.2	23	89	10	75	61	0	2	36	1.08
124203221--124203287	29	2.4	28	84	2	98	55	0	1	43	1.09
124203231--124203276	15	3.1	15	84	3	58	67	0	2	30	1.03
124208651--124208684	18	1.9	17	88	5	50	64	2	0	32	1.08
124212834--124212859	1	26.0	1	100	0	52	100	0	0	0	0.00
124218159--124218220	29	2.1	30	84	3	81	37	12	19	30	1.89
124219835--124220371	268	2.0	268	99	0	1065	43	17	16	22	1.88
124224918--124225297	207	1.9	201	89	3	589	48	14	13	22	1.80
124229906--124229947	18	2.3	19	91	4	68	45	4	4	45	1.45
124234907--124234964	29	2.0	29	100	0	116	20	17	20	41	1.90
124235953--124236016	31	2.1	31	93	0	110	20	28	15	35	1.93
124249251--124249281	16	1.9	16	93	0	53	41	12	16	29	1.85
124252070--124252110	21	2.0	21	90	0	64	29	21	29	19	1.98
124254022--124254052	16	1.9	16	93	0	53	41	12	16	29	1.85
124267248--124267272	2	12.5	2	100	0	50	48	0	52	0	1.00
124286606--124286644	14	2.8	14	84	0	51	38	5	2	53	1.37
124288763--124288793	12	2.6	12	89	0	53	16	25	16	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124290268--124290308	14	2.8	16	78	14	52	51	0	0	48	1.00
124290268--124290309	16	2.8	15	85	10	59	50	0	0	50	1.00
124293751--124293782	15	2.1	15	100	0	64	6	21	18	53	1.67
124295373--124295411	18	2.1	19	90	4	62	69	0	2	28	1.02
124311804--124311844	4	10.2	4	94	0	73	24	0	24	51	1.49
124321751--124322064	46	6.8	46	90	0	423	41	14	23	21	1.89
124325263--124325580	46	6.9	45	91	1	447	38	14	23	22	1.91
124333493--124333581	42	2.1	42	91	0	142	50	13	5	30	1.64
124335892--124335916	5	5.0	5	100	0	50	60	0	40	0	0.97
124341477--124341569	43	2.2	43	92	3	152	27	6	13	51	1.66
124343500--124343540	20	2.0	20	95	0	73	34	17	9	39	1.82
124345793--124345885	43	2.2	42	88	5	141	26	6	13	52	1.65
124355012--124355115	52	2.0	52	98	0	199	27	24	19	28	1.98
124360254--124360335	26	3.2	26	79	6	96	18	25	17	39	1.92
124368267--124368305	19	2.1	19	100	0	78	28	35	0	35	1.58
124376845--124376894	24	2.1	24	100	0	100	50	14	16	20	1.78
124379536--124379709	84	2.0	87	83	5	221	39	21	6	32	1.80
124385096--124385125	12	2.5	12	100	0	60	46	0	43	10	1.37
124385162--124385226	18	3.7	18	66	14	55	3	6	13	76	1.09
124385164--124385250	33	2.7	31	89	5	129	3	5	14	75	1.12
124385163--124385250	32	2.8	32	89	8	135	3	5	14	76	1.11
124385905--124386478	88	6.9	83	71	15	314	35	19	16	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124386073--124386134	30	2.1	30	90	6	99	41	29	9	19	1.83
124386231--124386265	14	2.6	14	90	4	54	51	5	14	28	1.65
124386244--124386479	77	3.0	76	80	7	251	32	19	17	30	1.95
124386285--124386501	79	2.7	77	84	7	249	33	17	18	30	1.94
124385905--124386723	255	3.3	245	83	8	905	34	19	17	28	1.94
124386341--124386649	171	1.8	169	84	4	424	30	20	18	30	1.97
124386401--124386592	94	2.1	92	83	5	235	33	18	20	27	1.96
124386495--124386847	78	4.7	76	85	5	430	33	19	16	30	1.94
124386495--124386850	153	2.4	149	85	3	453	33	19	16	31	1.94
124386804--124386899	49	2.0	49	95	0	174	31	20	17	30	1.96
124386738--124386971	121	1.9	121	93	0	405	33	18	16	31	1.94
124386853--124387137	72	4.0	72	84	0	381	30	18	16	34	1.93
124386654--124387043	193	2.0	195	85	3	532	33	17	15	33	1.91
124386579--124387112	265	2.0	267	88	4	786	32	18	15	32	1.93
124386859--124387146	144	2.0	142	91	1	468	29	18	15	36	1.92
124389284--124389346	32	2.0	32	93	0	108	36	14	11	38	1.81
124392743--124392802	16	3.7	16	68	4	57	70	21	5	3	1.22
124392746--124392803	17	3.5	17	68	13	57	74	17	5	3	1.15
124392749--124392834	35	2.6	34	91	8	142	74	15	6	3	1.17
124392749--124392834	33	2.6	35	92	7	144	74	15	6	3	1.17
124392776--124392833	18	3.3	18	72	18	59	75	13	6	3	1.13
124392873--124392902	12	2.5	12	100	0	60	10	43	0	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124400502--124400696	72	2.7	72	82	4	241	25	14	22	37	1.92
124400721--124401055	88	3.8	88	88	3	465	25	17	21	34	1.96
124400950--124400984	14	2.5	14	90	0	52	17	20	5	57	1.60
124400964--124401697	77	9.3	74	69	18	333	29	18	19	32	1.96
124401042--124401225	89	2.1	88	85	6	246	27	20	19	33	1.96
124400897--124401600	165	4.3	165	86	6	908	28	19	20	31	1.97
124401207--124401382	92	2.0	90	86	6	250	27	19	19	32	1.97
124401296--124401657	72	4.8	73	81	7	368	30	17	18	33	1.95
124401296--124401822	77	6.7	76	76	11	415	29	17	18	34	1.94
124401296--124402032	88	9.2	76	73	15	449	28	16	18	35	1.94
124401676--124401711	14	2.7	13	86	4	54	30	13	5	50	1.65
124401804--124401865	30	2.1	30	90	6	99	19	9	29	41	1.83
124401444--124402033	252	2.4	248	84	7	761	27	16	18	36	1.93
124402685--124402743	16	3.7	16	68	8	57	71	22	3	3	1.16
124402688--124402744	17	3.5	17	71	9	64	75	17	3	3	1.09
124402688--124402775	33	2.8	32	91	8	144	76	14	5	3	1.11
124402688--124402775	32	2.7	33	93	6	146	76	14	5	3	1.11
124402688--124402775	18	5.3	17	68	15	67	76	14	5	3	1.11
124402814--124402843	12	2.5	12	100	0	60	10	43	0	46	1.37
124404327--124404361	3	11.3	3	93	6	61	34	0	0	65	0.93
124406129--124406189	26	2.3	26	80	5	70	45	1	4	47	1.34
124406416--124406450	14	2.5	14	95	0	61	37	5	8	48	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124408360--124408456	33	2.8	35	72	20	89	51	1	2	45	1.19
124408395--124408479	33	2.8	30	76	15	86	51	1	1	45	1.16
124413917--124414204	131	2.2	131	84	2	364	35	21	18	24	1.95
124415311--124415382	32	2.3	32	81	13	87	58	0	5	36	1.22
124415427--124415466	15	2.7	15	92	0	62	45	0	10	45	1.37
124415651--124415693	19	2.3	19	80	8	52	51	4	13	30	1.62
124417380--124417423	13	3.2	13	84	15	54	40	0	2	56	1.11
124417385--124417424	13	2.9	14	86	13	57	42	0	2	55	1.13
124426978--124427046	34	2.0	35	82	2	86	46	24	7	21	1.77
124428711--124428750	21	2.0	20	85	14	55	47	5	5	42	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427