genome.fa.s11.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  146  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39898049--39898273	40	5.6	40	92	0	360	32	28	20	19	1.97
39900250--39900276	2	13.5	2	100	0	54	51	0	48	0	1.00
39912708--39912837	40	3.3	39	76	8	136	23	27	23	24	2.00
39912724--39912874	40	3.8	40	78	6	146	22	26	23	27	1.99
39912724--39912872	80	1.9	79	83	6	194	22	26	23	27	1.99
39919832--39919961	40	3.3	39	76	8	136	23	27	23	24	2.00
39919848--39919999	40	3.8	40	78	6	148	22	26	23	27	1.99
39919848--39919997	80	1.9	80	83	8	198	22	26	24	27	1.99
39934952--39935026	38	2.0	38	94	2	134	41	9	26	22	1.84
39943309--39943451	40	3.6	40	81	4	121	28	23	27	20	1.99
39943347--39943459	40	2.8	39	84	6	138	25	23	28	23	1.99
39945318--39945499	27	6.8	27	85	1	78	32	20	9	37	1.84
39945329--39945458	53	2.4	54	90	2	208	27	19	10	43	1.83
39945356--39945485	54	2.4	53	84	1	161	30	20	9	40	1.83
39945436--39945607	54	3.1	54	72	11	145	40	20	8	30	1.81
39945436--39945548	27	4.2	27	79	10	115	43	23	5	27	1.75
39945560--39945612	27	2.0	27	85	7	72	35	11	16	35	1.85
39946350--39946397	25	1.9	25	86	0	69	31	22	18	27	1.97
39946508--39946630	26	4.8	25	84	7	142	29	18	21	30	1.97
39948384--39948565	39	4.6	39	89	0	247	23	31	21	23	1.98
39948414--39948566	39	3.9	39	92	0	252	23	32	20	23	1.98
39956333--39956514	39	4.6	39	89	0	247	23	31	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39956363--39956515	39	3.9	39	92	0	252	23	32	20	23	1.98
39959914--39960047	29	4.6	29	79	3	81	25	32	16	25	1.96
39959913--39960103	58	3.3	59	87	2	201	25	30	15	27	1.96
39959944--39960103	87	1.8	87	86	2	232	26	30	15	28	1.95
39959973--39960103	29	4.5	29	94	0	235	26	28	14	30	1.95
39963320--39963398	29	2.7	29	86	5	106	27	32	15	24	1.95
39964041--39964082	2	21.0	2	90	0	66	45	2	2	50	1.27
39969671--39969740	21	3.2	21	68	18	61	38	27	14	20	1.91
39983127--39983218	27	3.4	27	87	0	121	25	18	17	39	1.92
39983112--39983218	54	2.0	54	86	0	151	25	17	19	37	1.94
39990993--39991157	42	3.9	42	81	7	183	29	24	15	30	1.96
39995250--39995415	35	4.7	35	78	0	179	30	8	18	42	1.80
39997514--39997584	24	3.0	24	89	0	106	35	1	38	25	1.65
39998035--39998146	27	4.1	27	79	7	120	16	24	21	37	1.94
39998035--39998146	54	2.1	54	84	3	145	16	24	21	37	1.94
40014637--40014814	43	4.2	43	86	2	225	23	16	31	28	1.96
40014625--40014814	85	2.2	86	84	0	247	23	16	30	30	1.96
40014894--40015088	85	2.3	85	88	1	284	23	16	29	29	1.97
40014894--40015096	43	4.8	43	88	1	275	23	16	29	30	1.96
40014617--40015175	282	2.0	283	95	0	1012	25	18	25	31	1.97
40018243--40018283	21	1.9	22	85	5	57	51	7	2	39	1.43
40024038--40024158	42	2.9	42	75	9	131	30	13	24	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40037940--40038107	40	4.2	40	77	3	151	22	26	23	27	2.00
40045146--40045313	40	4.2	40	77	3	151	22	26	23	27	2.00
40046832--40046862	14	2.2	14	100	0	62	35	12	6	45	1.68
40049431--40049701	46	5.7	48	74	13	179	28	20	29	21	1.98
40059052--40059215	40	4.1	40	82	6	188	25	20	28	26	1.99
40059052--40059229	80	2.2	80	83	4	209	25	20	27	25	1.99
40067163--40067326	40	4.1	40	82	6	188	25	20	28	26	1.99
40067163--40067340	80	2.2	80	83	4	209	25	20	27	25	1.99
40077705--40077745	15	2.7	15	80	0	55	51	17	14	17	1.77
40082589--40082700	56	2.0	56	94	0	197	33	6	28	31	1.82
40085189--40085283	40	2.4	40	92	0	154	21	17	29	31	1.96
40089720--40089753	13	2.6	13	90	0	59	26	35	20	17	1.95
40092089--40092218	40	3.3	39	76	8	136	23	27	23	24	2.00
40092105--40092255	40	3.8	40	78	6	146	22	26	23	27	1.99
40092105--40092253	80	1.9	79	83	6	194	22	26	23	27	1.99
40095536--40095656	50	2.6	47	82	6	138	25	23	14	36	1.93
40102802--40102939	40	3.5	40	92	3	217	24	23	28	23	2.00
40105545--40105649	38	2.8	38	81	5	115	30	19	23	26	1.98
40105677--40105990	40	7.9	40	95	1	560	19	24	30	25	1.98
40105677--40105990	79	4.0	80	96	1	560	19	24	30	25	1.98
40105677--40105990	119	2.6	119	96	0	565	19	24	30	25	1.98
40110393--40110497	47	2.2	47	96	0	192	34	7	30	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40112679--40112708	15	2.0	15	93	0	51	40	36	6	16	1.75
40113034--40113157	48	2.6	48	94	0	212	45	20	12	21	1.83
40113209--40113362	6	24.7	6	68	15	62	54	13	10	21	1.68
40113311--40113368	12	4.8	12	80	0	62	60	12	8	18	1.57
40113896--40113963	31	2.2	30	82	7	75	25	13	16	45	1.83
40113896--40113964	30	2.3	31	82	7	79	24	13	17	44	1.84
40115316--40115346	2	15.5	2	100	0	62	51	48	0	0	1.00
40119589--40119778	38	4.9	38	83	3	211	31	25	21	22	1.98
40122558--40122671	31	3.5	31	89	8	147	23	21	14	40	1.90
40122535--40122697	38	4.4	38	84	11	223	22	22	16	38	1.93
40122558--40122697	69	2.0	69	97	0	262	24	21	15	39	1.91
40122889--40122983	24	4.0	24	85	10	124	26	24	21	28	1.99
40122889--40122982	47	2.0	49	85	12	133	26	24	21	27	1.99
40123034--40123093	20	3.0	20	90	0	102	31	20	11	36	1.88
40123136--40123183	25	1.9	25	86	0	69	25	16	25	33	1.96
40130800--40130904	44	2.5	42	85	4	138	34	25	15	24	1.95
40137221--40137245	12	2.1	12	100	0	50	56	16	8	20	1.65
40141545--40141583	2	19.5	2	100	0	78	0	48	0	51	1.00
40142525--40142573	20	2.4	20	89	3	71	24	32	30	12	1.92
40142525--40142581	21	2.8	21	86	2	80	22	28	33	15	1.95
40143778--40143908	50	2.7	49	82	5	158	26	29	17	26	1.98
40143932--40144095	46	3.6	47	79	9	146	22	28	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40145725--40145902	90	2.0	90	84	3	232	26	19	16	37	1.93
40148003--40148261	137	1.9	139	81	7	323	21	11	12	54	1.69
40148328--40148389	25	2.5	24	79	7	61	50	3	1	45	1.27
40148624--40148665	16	2.6	16	81	7	50	54	0	4	40	1.21
40150300--40150370	35	2.0	35	91	0	115	22	11	23	42	1.86
40151056--40151242	48	3.9	47	80	7	196	28	18	26	26	1.98
40151055--40151241	98	1.9	96	90	2	293	28	18	26	26	1.98
40151936--40151961	6	4.3	6	100	0	52	15	0	34	50	1.45
40161672--40161839	27	6.2	27	83	2	185	38	20	17	23	1.93
40164095--40164121	13	2.1	13	100	0	54	14	14	7	62	1.51
40164318--40164356	13	3.0	12	82	17	51	17	17	15	48	1.81
40183084--40183133	26	1.9	26	87	0	73	14	14	24	48	1.80
40183409--40183544	29	4.7	29	84	4	168	27	29	16	27	1.97
40183409--40183561	58	2.7	57	80	6	173	28	29	15	27	1.96
40183621--40183666	19	2.6	18	82	6	58	19	36	21	21	1.95
40184887--40184936	16	3.1	16	94	0	82	12	6	34	48	1.65
40186868--40186944	24	3.2	24	65	34	65	44	18	12	24	1.85
40189944--40189999	16	3.5	16	100	0	112	14	26	30	28	1.95
40191181--40191221	17	2.4	17	91	0	73	53	9	31	4	1.55
40193330--40193559	46	5.0	46	96	0	370	38	14	24	22	1.92
40193331--40193612	46	6.0	46	91	2	341	39	14	24	21	1.91
40195263--40195350	43	2.0	43	97	0	167	39	23	9	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40195540--40195690	42	3.6	42	85	3	207	29	25	13	30	1.94
40206039--40206216	40	4.5	40	92	3	272	25	28	23	23	2.00
40213972--40214145	40	4.4	40	94	2	291	24	28	22	24	1.99
40221890--40222027	40	3.5	40	94	3	226	23	28	23	23	1.99
40224301--40224473	44	3.8	44	79	11	206	28	29	21	20	1.98
40224309--40224478	93	1.8	91	94	2	304	27	30	21	20	1.98
40227560--40227585	13	2.0	13	100	0	52	30	15	23	30	1.95
40230728--40230786	29	2.0	29	86	0	82	42	5	27	25	1.76
40232305--40232587	27	10.4	27	83	3	165	32	21	8	37	1.83
40232388--40232753	27	13.4	27	75	8	163	37	20	9	33	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427