genome.fa.s11.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  133  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35737393--35737426	13	2.5	14	85	9	52	61	0	0	38	0.96
35738158--35738235	31	2.6	28	76	15	77	44	1	0	53	1.08
35739057--35739099	22	2.0	22	85	0	59	62	11	6	18	1.50
35740391--35740495	27	3.9	27	84	9	133	37	21	25	15	1.93
35741900--35741969	23	3.0	24	93	2	115	25	38	1	34	1.65
35748211--35748322	27	4.2	26	85	7	143	37	23	24	15	1.93
35748211--35748322	54	2.1	54	88	3	163	37	23	24	15	1.93
35749735--35749809	24	3.1	24	92	0	123	25	40	1	33	1.64
35762609--35762793	79	2.3	82	82	7	220	24	23	27	24	2.00
35762610--35762801	40	4.8	40	78	7	142	24	23	28	23	2.00
35762609--35762826	79	2.7	79	78	6	174	24	22	27	24	2.00
35767729--35767757	2	14.5	2	100	0	58	51	0	0	48	1.00
35768397--35768441	19	2.4	19	92	0	72	35	0	0	64	0.94
35770301--35770350	22	2.4	21	81	15	59	28	4	0	68	1.08
35774187--35774223	2	18.5	2	100	0	74	48	0	0	51	1.00
35775069--35775127	26	2.3	25	77	8	66	27	0	10	62	1.27
35776008--35776111	52	2.0	52	96	0	190	37	10	10	41	1.74
35780676--35780751	39	1.9	39	100	0	152	36	13	11	38	1.81
35781574--35781746	87	2.0	87	90	0	274	39	12	8	39	1.72
35781828--35781958	68	1.9	69	88	1	201	50	7	4	37	1.52
35781834--35781977	68	2.1	69	82	1	173	52	6	3	37	1.44
35789875--35789907	13	2.4	14	90	5	50	66	3	0	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35789916--35789948	6	5.5	6	96	0	57	63	0	3	33	1.10
35801331--35801373	18	2.4	19	88	7	63	67	2	0	30	1.03
35826166--35826209	23	1.9	23	81	9	54	38	27	0	34	1.57
35830254--35830278	8	3.1	8	100	0	50	24	0	28	48	1.52
35836088--35836185	49	2.0	49	97	0	187	36	9	22	31	1.86
35844118--35844491	48	7.8	48	81	1	392	24	29	18	26	1.98
35844118--35844485	144	2.6	144	86	3	483	24	29	19	26	1.98
35846228--35846270	22	2.0	22	86	9	61	25	6	16	51	1.69
35849397--35849430	17	1.9	18	88	5	52	23	2	8	64	1.36
35849968--35850038	29	2.4	29	80	0	88	35	11	19	33	1.88
35850323--35850377	19	2.9	19	72	5	58	38	0	0	61	0.96
35871431--35871499	20	3.3	22	76	10	63	23	21	18	36	1.95
35881103--35881163	29	2.1	29	96	0	113	40	8	19	31	1.81
35884550--35884609	30	2.0	30	90	0	93	58	13	1	26	1.45
35885144--35885170	10	2.7	10	100	0	54	18	33	22	25	1.97
35890821--35890845	12	2.1	12	100	0	50	16	0	0	84	0.63
35892668--35892962	144	2.0	144	98	0	563	39	16	14	29	1.89
35893861--35893890	14	2.1	14	100	0	60	56	6	26	10	1.57
35895285--35895330	23	2.0	23	95	0	83	36	4	15	43	1.66
35903341--35903400	31	1.9	31	96	0	111	36	20	25	18	1.94
35903871--35904013	43	3.4	43	83	5	132	31	16	25	26	1.97
35907570--35907868	77	3.9	77	91	0	474	36	14	2	46	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35907988--35908021	15	2.3	15	89	0	50	44	2	26	26	1.69
35915018--35915050	15	2.2	15	94	0	57	42	0	27	30	1.56
35917124--35917187	28	2.3	28	89	5	94	37	1	0	60	1.06
35917151--35917219	9	7.7	9	72	16	54	31	1	1	65	1.11
35917320--35917630	86	3.6	86	82	4	331	34	10	16	39	1.82
35917320--35917631	87	3.6	86	80	8	305	34	10	16	39	1.82
35919598--35919841	121	2.0	121	100	0	488	43	15	9	31	1.78
35931187--35931384	71	2.8	70	92	3	294	33	17	28	20	1.95
35931253--35931370	41	3.1	41	60	28	98	32	17	28	21	1.96
35931221--35931384	71	2.3	71	100	0	328	35	17	28	18	1.94
35933341--35933508	65	2.6	65	84	8	218	32	25	22	19	1.98
35935151--35935179	15	1.9	15	100	0	58	41	6	20	31	1.79
35939405--35939533	46	2.8	46	95	0	222	29	29	21	19	1.98
35939413--35939552	46	3.0	45	88	4	140	28	29	21	20	1.98
35942754--35942782	7	4.1	7	100	0	58	72	0	13	13	1.13
35949783--35949885	29	3.6	29	81	2	118	21	16	33	29	1.95
35957795--35957897	29	3.6	29	81	2	118	21	16	33	29	1.95
35959667--35959710	13	3.2	14	81	15	56	59	0	0	40	0.98
35963383--35963418	17	2.1	17	90	10	56	58	22	19	0	1.40
35968290--35968419	40	3.2	40	83	4	165	23	29	25	22	1.99
35976406--35976535	40	3.2	40	83	4	165	23	29	25	22	1.99
35978793--35978839	18	2.7	18	90	3	69	46	4	12	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35979080--35979171	40	2.3	40	84	3	123	25	15	27	32	1.95
35983267--35983338	29	2.5	29	95	0	126	26	30	15	27	1.96
35991179--35991207	2	14.5	2	100	0	58	51	0	0	48	1.00
35991300--35991372	29	2.5	29	93	0	101	26	31	16	26	1.96
35999337--35999370	18	1.9	17	94	5	59	8	17	8	64	1.47
36000492--36000539	25	2.0	24	83	4	60	31	25	18	25	1.98
36000578--36000634	9	5.9	9	73	15	51	35	8	21	35	1.84
36000576--36000646	20	3.5	20	94	0	124	35	11	21	32	1.89
36000587--36000641	11	5.4	11	70	16	55	36	12	20	30	1.90
36000691--36000928	24	10.0	24	90	3	322	27	21	21	28	1.99
36001122--36001185	31	2.1	31	90	0	101	35	15	23	25	1.94
36008347--36008557	46	4.6	44	74	9	165	26	18	28	26	1.98
36012813--36012846	18	1.9	17	88	5	50	50	14	14	20	1.78
36012996--36013060	27	2.5	26	85	5	85	38	21	23	16	1.93
36013397--36013474	27	2.8	26	79	9	75	35	21	20	21	1.96
36013405--36013481	28	2.9	27	84	3	93	35	22	20	22	1.96
36013683--36013800	27	4.4	27	91	0	182	25	22	17	34	1.96
36013793--36014137	27	12.8	27	84	4	410	37	7	24	30	1.83
36013793--36014137	81	4.3	81	86	0	467	37	7	24	30	1.83
36016132--36016165	18	1.9	17	88	5	50	50	14	14	20	1.78
36016315--36016379	27	2.5	26	82	5	76	38	24	20	16	1.93
36016746--36016822	28	2.9	27	84	3	93	35	22	20	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36017053--36017195	27	5.3	27	91	0	187	27	19	18	34	1.95
36017188--36017523	27	12.5	27	86	1	442	38	8	23	29	1.84
36017188--36017531	81	4.3	81	86	2	487	37	8	24	29	1.85
36019527--36019560	18	1.9	17	88	5	50	50	14	14	20	1.78
36019946--36020004	22	2.7	22	81	0	64	32	22	25	20	1.98
36020156--36020221	28	2.4	29	85	10	93	40	21	18	19	1.91
36020412--36020474	26	2.4	28	76	13	69	36	23	19	20	1.95
36020455--36020571	27	4.3	27	86	0	153	28	19	16	35	1.93
36020561--36020907	27	12.9	27	80	9	300	39	9	22	27	1.86
36020563--36020907	81	4.3	81	85	4	437	39	9	22	28	1.85
36020564--36020907	54	6.4	54	83	5	403	39	9	22	28	1.85
36027172--36027219	25	1.9	25	86	0	69	33	25	16	25	1.96
36027262--36027322	20	3.0	20	92	0	104	34	11	21	32	1.89
36027372--36027490	24	5.0	24	88	5	170	28	21	22	26	1.99
36027372--36027490	47	2.5	48	89	5	170	28	21	22	26	1.99
36027682--36027776	31	3.1	31	98	0	181	38	15	22	23	1.92
36034244--36034291	25	1.9	25	86	0	69	33	25	16	25	1.96
36034334--36034394	20	3.0	20	92	0	104	34	11	21	32	1.89
36034444--36034585	24	6.0	24	90	5	200	28	21	22	26	1.99
36034444--36034585	47	3.0	47	89	6	198	28	21	22	26	1.99
36034777--36034870	31	3.1	31	96	1	172	39	14	22	23	1.91
36035701--36035756	22	2.5	23	80	11	64	66	3	7	23	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36063854--36063887	18	1.9	17	94	5	59	8	17	8	64	1.47
36065008--36065055	25	2.0	24	83	4	60	31	25	18	25	1.98
36065092--36065161	20	3.5	20	94	3	115	35	11	21	31	1.89
36065206--36065443	24	10.0	24	90	3	349	27	23	21	27	1.99
36065637--36065700	31	2.1	31	90	0	101	35	15	23	25	1.94
36073210--36073279	27	2.5	28	88	2	106	28	14	25	31	1.95
36081178--36081247	27	2.5	28	88	2	106	28	14	25	31	1.95
36086556--36086664	28	3.9	28	79	8	107	28	12	25	33	1.93
36086556--36086651	28	3.4	29	81	9	110	28	13	27	31	1.94
36091077--36091105	13	2.2	13	100	0	58	20	13	0	65	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427