genome.fa.s11.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  137  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36943742--36943801	20	3.0	20	90	0	102	33	20	11	35	1.88
36945050--36945114	27	2.4	27	82	5	78	20	23	21	35	1.96
36945168--36945370	27	7.4	27	73	8	115	35	9	17	37	1.82
36945293--36945408	54	2.1	55	80	4	137	42	10	17	30	1.82
36945322--36945687	27	13.6	27	86	0	408	39	7	24	28	1.83
36945699--36945788	27	3.3	26	78	6	99	32	10	18	38	1.84
36945683--36945788	54	2.0	53	83	9	135	32	10	19	37	1.86
36959460--36959583	3	41.3	3	100	0	248	0	33	0	66	0.92
36963502--36963641	42	3.3	42	69	14	108	26	15	24	34	1.94
36966862--36966899	17	2.3	16	90	4	58	71	2	7	18	1.23
36978104--36978129	13	2.0	13	100	0	52	30	0	15	53	1.42
36982588--36982813	48	4.6	50	76	10	216	24	27	18	29	1.98
36982588--36982813	98	2.3	97	82	8	246	24	27	18	29	1.98
36984959--36985131	48	3.6	48	76	1	166	25	25	18	30	1.98
36986362--36986475	29	4.0	30	76	12	123	26	30	14	28	1.95
36986363--36986475	58	2.0	57	85	5	156	25	30	14	29	1.95
37006004--37006133	40	3.2	40	77	13	142	24	26	24	23	2.00
37006020--37006171	40	3.8	40	80	5	155	22	26	24	26	2.00
37006020--37006171	80	1.9	80	83	5	200	22	26	24	26	2.00
37009783--37009966	40	4.6	39	75	6	138	26	23	27	22	2.00
37009823--37010011	80	2.4	81	77	4	186	23	24	29	22	1.99
37017358--37017509	40	3.8	39	84	1	151	23	26	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37017358--37017509	80	1.9	80	83	5	200	23	26	23	26	2.00
37019291--37019475	48	3.8	47	73	4	163	25	27	18	28	1.98
37019296--37019483	98	1.9	97	87	4	272	25	28	18	27	1.98
37030933--37031118	40	4.7	39	79	5	167	24	24	23	26	2.00
37043121--37043233	43	2.6	44	79	8	126	27	19	23	30	1.98
37049387--37049456	27	2.5	28	95	2	124	28	14	27	30	1.95
37049387--37049468	27	3.0	27	85	8	78	29	15	24	30	1.96
37060109--37060178	27	2.5	28	95	2	124	28	14	27	30	1.95
37060109--37060190	27	3.0	27	85	8	78	29	15	24	30	1.96
37063863--37064033	93	1.8	93	96	0	315	28	29	21	21	1.98
37063855--37064030	46	3.8	46	80	12	225	28	28	21	21	1.98
37066393--37066481	30	3.0	30	79	11	94	56	15	17	10	1.67
37066393--37066475	15	5.6	14	73	10	58	55	16	18	9	1.68
37066404--37066481	15	5.2	15	75	9	70	55	15	17	11	1.69
37068557--37068614	21	2.8	20	89	5	62	1	50	20	27	1.58
37068568--37068632	21	3.1	21	90	0	85	1	49	20	29	1.58
37068619--37068649	15	2.0	16	93	6	55	0	45	16	38	1.47
37069058--37069086	14	2.1	14	93	6	51	58	6	0	34	1.25
37069253--37069291	17	2.4	16	86	4	51	51	0	12	35	1.40
37071975--37072159	79	2.3	81	81	7	218	24	27	23	24	2.00
37071975--37072156	40	4.6	40	78	6	174	24	28	23	24	2.00
37077437--37077603	9	19.0	9	69	11	80	33	1	19	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37077454--37077572	36	3.1	36	86	8	130	33	0	18	47	1.55
37077487--37077595	43	2.5	43	90	0	182	33	0	19	47	1.49
37077511--37077674	52	3.0	55	81	13	203	33	0	14	51	1.43
37077485--37077608	43	2.9	43	85	3	160	33	0	17	48	1.48
37077601--37077635	13	2.6	13	95	4	61	37	0	8	54	1.31
37081362--37081431	27	2.5	28	90	4	115	34	0	40	25	1.56
37081694--37081744	16	3.1	16	75	10	50	17	3	3	74	1.12
37081924--37081995	7	10.1	7	76	8	65	38	40	0	20	1.53
37081924--37081995	15	5.1	14	75	8	65	38	40	0	20	1.53
37082019--37082087	22	2.9	23	77	22	79	50	28	0	20	1.48
37082025--37082087	7	9.0	7	74	6	56	50	28	0	20	1.48
37083253--37083282	12	2.5	12	100	0	60	50	30	13	6	1.67
37084099--37084160	29	2.2	28	75	10	65	43	3	3	50	1.34
37096592--37097010	51	8.3	51	94	2	715	33	8	27	30	1.87
37096592--37097010	151	2.8	151	94	2	734	33	8	27	30	1.87
37096592--37097010	100	4.2	100	95	1	739	33	8	27	30	1.87
37097059--37097145	37	2.3	37	90	5	140	20	18	33	27	1.96
37106074--37106291	80	2.7	80	83	6	264	23	22	27	26	1.99
37106074--37106256	40	4.6	40	91	1	278	21	22	28	26	1.99
37108583--37108753	93	1.8	93	92	2	290	28	28	21	21	1.99
37108578--37108751	46	3.8	46	78	13	196	28	27	21	22	1.99
37109172--37109231	30	2.0	30	90	0	93	30	25	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37116626--37116651	2	13.0	2	100	0	52	50	0	0	50	1.00
37116670--37116809	39	3.5	39	87	4	192	18	22	27	31	1.97
37121777--37121860	28	3.2	28	65	25	83	23	16	29	29	1.96
37121673--37121917	49	4.9	49	83	2	301	25	18	26	29	1.98
37123465--37123892	48	8.9	49	80	6	491	27	16	28	27	1.97
37123465--37123892	96	4.4	96	91	1	680	27	16	28	27	1.97
37126849--37127032	49	3.7	49	81	5	201	26	17	26	29	1.97
37126842--37127032	100	1.9	100	89	3	294	26	16	26	30	1.97
37128516--37128551	18	2.0	18	100	0	72	33	11	16	38	1.84
37130000--37130094	38	2.5	37	84	8	111	42	10	9	37	1.72
37150445--37150567	49	2.5	49	77	5	122	22	26	18	31	1.97
37159617--37159744	39	3.3	39	88	1	186	19	20	27	32	1.97
37161843--37162203	49	7.6	48	69	10	135	24	27	19	28	1.99
37162079--37162208	46	2.8	45	81	6	147	24	28	16	30	1.97
37166542--37166597	28	2.0	28	96	0	103	37	14	8	39	1.77
37183129--37183173	23	2.0	23	81	0	54	51	15	2	31	1.56
37185316--37185342	13	2.1	13	100	0	54	55	22	0	22	1.44
37186425--37186488	31	2.1	31	90	0	101	23	25	15	35	1.94
37186680--37186821	47	3.0	47	89	6	198	26	22	21	28	1.99
37186680--37186821	24	6.0	24	90	4	200	26	22	21	28	1.99
37186871--37186931	20	3.0	20	92	0	104	32	21	11	34	1.89
37193506--37193568	31	2.1	31	90	3	101	23	23	15	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37193760--37193902	24	6.0	24	91	4	209	26	22	22	28	1.99
37193760--37193901	47	3.0	48	90	5	207	26	22	22	28	1.99
37193759--37193902	71	2.0	72	89	4	220	26	22	22	29	1.99
37193952--37194011	20	3.0	20	95	4	113	35	20	10	35	1.86
37193952--37194006	11	5.5	11	71	20	57	32	20	10	36	1.87
37193949--37194010	19	3.3	19	93	6	108	33	20	9	35	1.86
37194054--37194101	25	1.9	25	86	0	69	25	16	25	33	1.96
37201562--37201625	31	2.1	31	90	0	101	23	25	15	35	1.94
37201817--37201959	24	6.0	24	91	4	209	26	22	22	28	1.99
37201817--37201958	47	3.0	48	90	5	207	26	22	22	28	1.99
37201816--37201959	71	2.0	72	89	4	220	26	22	22	29	1.99
37202009--37202069	20	3.0	20	92	0	104	32	21	11	34	1.89
37202112--37202159	25	1.9	25	86	0	69	25	16	25	33	1.96
37206508--37206546	16	2.3	19	79	20	50	61	12	2	23	1.43
37206508--37206546	17	2.3	17	86	8	53	61	12	2	23	1.43
37210617--37210794	40	4.5	40	90	2	279	24	28	23	24	2.00
37214301--37214364	26	2.4	26	81	5	74	34	23	10	31	1.89
37214469--37214580	27	4.2	26	85	7	125	17	24	20	37	1.94
37214469--37214580	54	2.1	54	83	6	138	17	24	20	37	1.94
37222323--37222428	27	3.9	26	82	7	122	17	23	21	36	1.95
37222323--37222432	54	2.0	54	89	3	168	17	23	20	38	1.93
37230311--37230361	3	17.0	3	100	0	102	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37230373--37230406	7	4.9	7	100	0	68	58	14	11	14	1.63
37231436--37231498	17	3.7	16	83	12	81	42	25	1	30	1.64
37231419--37231498	34	2.4	34	86	0	115	41	26	3	28	1.73
37231437--37231509	34	2.1	34	85	5	94	45	26	1	27	1.62
37232125--37232212	36	2.4	36	84	0	104	42	21	6	29	1.79
37232248--37232290	17	2.5	17	80	0	50	32	13	23	30	1.93
37238879--37239018	47	2.9	48	75	6	149	28	19	28	23	1.98
37239262--37239296	2	17.5	2	100	0	70	51	0	0	48	1.00
37246781--37246843	15	4.2	15	75	0	63	50	15	17	15	1.78
37248928--37249001	37	2.0	37	82	15	91	41	24	8	25	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427