Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  425  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123733524--123733564
22
2.0
20
85
9
55
34
0
4
60
1.18
123733776--123733820
21
2.2
20
84
11
56
48
2
0
48
1.13
123733782--123733830
21
2.4
21
82
3
64
48
2
0
48
1.12
123753627--123753696
33
2.2
32
92
5
115
2
5
25
65
1.28
123759448--123759488
22
2.0
22
85
9
59
29
2
4
63
1.28
123763453--123763504
16
3.4
15
79
10
52
25
0
5
69
1.10
123766225--123766275
21
2.4
22
84
15
72
49
0
17
33
1.47
123776145--123776190
19
2.2
20
85
11
58
60
13
17
8
1.56
123779681--123779710
10
2.8
11
90
10
53
83
0
0
16
0.65
123784130--123784159
10
2.8
11
90
10
53
83
0
0
16
0.65
123785477--123785511
16
2.2
16
90
10
54
42
0
0
57
0.99
123785470--123785509
20
2.0
20
90
5
62
45
0
0
55
0.99
123785535--123785569
5
7.0
5
93
0
52
40
5
0
54
1.24
123785526--123785569
15
2.9
15
82
3
61
38
9
2
50
1.47
123786190--123786238
20
2.4
21
76
13
57
36
2
2
59
1.21
123794663--123794710
22
2.2
21
89
10
71
45
0
0
54
0.99
123794663--123794710
21
2.2
22
85
10
64
45
0
0
54
0.99
123794674--123794721
21
2.3
21
76
16
55
47
4
0
47
1.21
123795786--123795847
31
2.0
31
81
12
74
22
9
3
64
1.38
123801276--123801331
28
2.0
28
96
0
103
17
16
17
48
1.82
123805050--123805107
31
1.9
31
89
3
91
58
0
0
41
0.98
123806510--123806561
24
2.1
25
82
7
61
48
1
0
50
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123833643--123833707
7
9.3
7
91
0
76
40
9
29
21
1.84
123842587--123842644
7
8.3
7
90
0
62
39
10
29
20
1.86
123842592--123842644
14
3.8
14
82
0
70
41
9
30
18
1.82
123842793--123842850
7
8.3
7
90
0
62
39
10
29
20
1.86
123842798--123842850
14
3.8
14
82
0
70
41
9
30
18
1.82
123842544--123842951
206
2.0
206
99
0
798
33
14
25
26
1.95
123848787--123848853
11
6.1
11
73
18
50
49
0
2
47
1.16
123848820--123848857
15
2.5
15
87
8
51
50
0
0
50
1.00
123848787--123848859
36
2.0
37
82
12
89
49
0
2
47
1.15
123849712--123849769
28
2.1
28
96
0
107
34
3
8
53
1.49
123850673--123850714
2
21.0
2
100
0
84
50
0
0
50
1.00
123862009--123862116
31
3.5
30
80
11
101
30
7
9
52
1.61
123862034--123862119
31
2.8
31
81
8
104
26
10
9
53
1.65
123862555--123862625
31
2.3
31
82
4
90
52
9
11
26
1.68
123863800--123863857
23
2.4
24
80
13
66
48
3
3
44
1.36
123865991--123866031
21
1.9
22
90
5
66
31
36
0
31
1.58
123866286--123866368
40
2.1
40
100
0
166
9
27
9
53
1.65
123872783--123872825
18
2.4
18
96
0
77
41
0
0
58
0.98
123876236--123876261
2
13.0
2
100
0
52
50
0
0
50
1.00
123880907--123880939
4
8.2
4
100
0
66
48
27
0
24
1.51
123880970--123880995
11
2.4
11
100
0
52
30
0
0
69
0.89
123888915--123888969
4
13.8
4
80
0
56
45
20
5
29
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123888913--123888972
28
2.1
28
84
0
75
45
18
5
31
1.71
123888915--123888968
20
2.7
20
79
0
72
44
20
5
29
1.74
123891990--123892016
4
6.8
4
100
0
54
25
0
22
51
1.48
123892141--123892214
35
2.1
35
97
0
139
48
21
14
14
1.80
123906121--123906145
13
1.9
13
100
0
50
0
32
4
64
1.12
123912629--123912688
30
2.0
30
87
6
86
36
8
26
28
1.85
123913109--123913285
47
3.8
46
80
13
218
20
20
29
29
1.98
123920185--123920244
30
2.0
30
87
6
86
36
8
26
28
1.85
123920665--123920841
47
3.8
46
80
13
218
20
20
29
29
1.98
123922687--123922733
2
24.0
2
78
4
51
51
4
2
42
1.33
123922637--123922701
25
2.6
25
87
4
87
58
4
6
30
1.43
123930744--123930895
33
4.8
33
81
11
156
28
48
13
10
1.75
123930762--123930814
27
2.0
27
100
0
106
28
49
15
7
1.71
123934519--123934570
27
1.9
27
100
0
104
63
9
3
23
1.41
123935940--123935983
22
2.1
20
83
8
52
34
6
15
43
1.74
123938168--123938241
29
2.6
29
77
14
73
40
1
6
51
1.37
123938693--123938717
13
1.9
13
100
0
50
40
0
0
60
0.97
123939261--123939293
14
2.4
14
100
0
66
18
30
0
51
1.46
123946691--123946729
9
4.3
9
90
0
51
30
0
0
69
0.89
123946690--123946724
9
3.9
9
92
0
61
25
0
0
74
0.82
123947206--123947256
27
1.9
26
88
11
77
49
0
0
50
1.00
123965373--123965406
14
2.4
14
85
0
50
41
20
2
35
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123967537--123967612
30
2.6
30
81
6
84
42
15
9
32
1.79
123970259--123970308
17
2.9
16
85
8
55
32
2
4
62
1.25
123974425--123974476
26
2.0
26
96
0
95
36
11
11
40
1.78
123978796--123978825
12
2.5
12
94
0
51
30
33
26
10
1.89
123980535--123980587
17
3.1
16
78
8
52
50
3
7
37
1.49
123987423--123987466
14
2.9
15
80
10
54
47
0
0
52
1.00
123993840--123993865
12
2.2
12
100
0
52
7
46
0
46
1.31
123994589--123994661
19
3.7
19
69
16
60
32
5
4
57
1.41
123996347--123996382
12
3.0
12
87
0
54
25
22
5
47
1.73
124003461--124003794
88
3.8
88
88
4
456
25
17
21
34
1.96
124003689--124003723
14
2.5
14
90
0
52
17
20
5
57
1.60
124003704--124003866
74
2.1
77
87
5
233
28
19
20
30
1.97
124003781--124003956
92
2.0
89
86
8
250
27
20
19
32
1.97
124003636--124004199
166
3.4
166
93
1
913
27
19
20
32
1.97
124003871--124004396
74
6.8
76
70
17
253
29
18
19
32
1.95
124004034--124004562
72
6.7
76
77
11
426
29
17
18
34
1.94
124004036--124004562
77
6.7
76
77
11
458
29
17
18
34
1.94
124004415--124004450
14
2.7
13
86
4
54
30
13
5
50
1.65
124004359--124004519
88
1.8
88
85
4
227
26
17
19
36
1.94
124004544--124004605
30
2.1
30
90
6
99
19
9
29
41
1.83
124004183--124004772
253
2.4
248
85
7
761
27
16
18
36
1.93
124005523--124005548
12
2.2
12
100
0
52
7
46
0
46
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124019664--124019994
111
3.0
111
97
0
617
33
11
20
33
1.89
124024091--124024132
15
2.8
16
75
10
52
52
19
11
16
1.74
124033511--124033552
23
1.9
22
90
9
68
28
2
4
64
1.26
124035370--124035444
31
2.4
31
86
4
98
48
0
8
44
1.32
124038260--124038315
21
2.7
21
86
5
78
28
33
8
28
1.87
124058376--124058471
31
3.1
31
80
0
111
34
12
10
42
1.77
124061237--124061269
15
2.1
17
88
11
52
39
6
6
48
1.53
124062077--124062108
11
2.6
13
85
14
50
25
3
0
71
1.00
124066702--124066773
37
1.9
37
83
5
92
44
16
1
37
1.57
124066712--124066792
37
2.2
37
88
2
119
40
18
1
39
1.59
124072029--124072080
13
3.8
13
78
9
59
32
3
0
63
1.12
124072030--124072099
30
2.3
30
78
9
72
30
4
0
65
1.11
124075955--124076143
94
2.0
94
97
0
360
45
15
19
19
1.85
124106617--124106654
20
1.9
19
89
5
58
15
13
26
44
1.83
124107457--124107497
11
3.7
11
84
12
57
29
0
48
21
1.50
124107622--124107778
78
2.0
77
96
1
287
17
15
12
54
1.70
124107767--124107827
30
2.0
30
90
0
95
24
3
36
36
1.72
124111851--124111883
12
2.8
12
95
0
57
42
18
12
27
1.85
124111908--124111940
17
2.0
17
94
5
59
36
15
0
48
1.45
124112238--124112399
46
3.5
46
87
2
218
20
24
14
41
1.89
124112270--124112407
46
3.0
46
93
0
222
21
24
15
38
1.92
124117661--124117762
37
2.6
38
75
20
95
57
4
4
32
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124117946--124118008
33
1.9
33
83
6
83
50
1
7
39
1.41
124118509--124118600
30
3.1
29
86
10
132
5
4
15
75
1.15
124118509--124118600
31
3.1
29
85
10
123
5
4
15
75
1.15
124119231--124119663
88
5.0
85
71
16
327
37
19
16
26
1.92
124119410--124119470
30
2.1
29
90
9
97
42
27
9
19
1.83
124119621--124120135
75
6.5
79
76
12
376
32
19
17
30
1.95
124119676--124119983
171
1.8
168
87
3
456
30
20
18
29
1.97
124119242--124120080
254
3.4
245
84
7
920
35
18
16
28
1.94
124120158--124120347
72
2.6
72
81
5
240
34
24
15
25
1.94
124120387--124120608
70
3.1
70
85
5
313
38
22
14
25
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427