genome.fa.s11.2.7.7.80.10.50.1000.244.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  244  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69411661--69411711	20	2.6	19	73	11	50	66	1	3	27	1.20
69411611--69411733	30	3.7	31	73	17	88	61	1	4	31	1.26
69411843--69411946	35	2.9	35	81	9	113	61	0	5	31	1.26
69418215--69418342	23	5.4	24	71	11	79	28	21	17	31	1.97
69419190--69419254	28	2.3	28	94	0	112	18	46	20	15	1.84
69420420--69420553	49	2.7	49	81	12	166	26	26	20	27	1.99
69427011--69427137	59	2.2	59	94	0	227	48	7	4	40	1.52
69427450--69427483	15	2.3	15	89	0	50	17	23	5	52	1.66
69429719--69429903	42	4.4	42	88	0	244	25	22	35	17	1.95
69429736--69429917	84	2.2	84	89	0	274	23	22	35	18	1.96
69429954--69430041	42	2.1	42	91	4	142	27	28	30	13	1.94
69432782--69432826	23	2.0	23	82	4	56	40	6	0	53	1.27
69432935--69432984	16	3.0	16	82	5	55	34	0	2	64	1.05
69433107--69433154	20	2.4	21	76	13	57	14	8	8	68	1.37
69439265--69439348	26	3.2	26	96	0	150	36	25	4	33	1.77
69440268--69440334	30	2.2	31	86	7	102	28	22	13	35	1.92
69453774--69453834	31	2.0	31	96	0	113	32	18	8	40	1.80
69455470--69455579	31	3.4	31	65	14	85	14	30	5	49	1.66
69455459--69455617	68	2.3	70	92	5	268	13	35	3	47	1.60
69460821--69460908	33	2.7	33	100	0	176	23	7	23	44	1.80
69460925--69461011	44	2.0	43	88	2	129	31	13	26	28	1.94
69461394--69461527	57	2.4	55	82	8	155	43	1	4	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69471003--69471110	40	2.7	40	95	0	189	27	27	20	24	1.99
69478093--69478132	20	2.0	19	85	9	53	15	27	17	40	1.89
69478117--69478164	20	2.4	20	79	6	53	10	25	27	37	1.88
69488083--69488167	42	2.0	42	88	4	127	17	24	35	22	1.95
69490832--69490930	30	3.3	30	84	0	126	26	21	27	25	1.99
69493482--69493552	19	3.8	17	76	18	70	45	4	2	47	1.36
69493527--69493599	25	3.0	24	67	11	58	36	4	1	57	1.26
69493668--69493716	25	2.0	25	88	4	73	67	0	2	30	1.02
69493681--69493720	13	3.2	13	83	16	57	70	0	0	30	0.88
69493792--69493879	12	7.8	12	68	26	59	55	2	0	42	1.12
69493794--69493847	21	2.6	21	94	5	92	57	0	0	42	0.98
69493794--69493854	21	2.9	19	88	11	77	57	1	0	40	1.08
69493809--69493893	37	2.5	33	80	16	84	58	2	0	38	1.11
69493827--69493933	44	2.4	47	76	7	116	53	4	0	41	1.28
69493928--69493965	4	9.2	4	94	5	67	76	0	0	23	0.79
69493918--69493962	21	2.2	20	92	4	72	73	0	0	26	0.84
69493930--69493998	13	5.7	12	75	11	52	72	1	4	21	1.10
69493937--69494022	44	1.9	44	81	11	104	72	2	5	19	1.17
69493976--69494025	25	2.0	26	84	11	68	70	4	6	20	1.25
69493970--69494029	26	2.3	27	80	13	72	71	3	5	20	1.19
69497280--69497342	18	3.4	18	77	14	65	39	3	12	44	1.59
69498549--69498592	12	3.7	12	79	11	54	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69506047--69506107	23	2.8	22	80	11	63	55	1	3	39	1.26
69507219--69507243	11	2.3	11	100	0	50	44	0	16	40	1.47
69507270--69507323	17	3.2	17	69	10	56	27	5	18	48	1.70
69507278--69507333	17	3.3	17	70	9	60	30	8	16	44	1.78
69511948--69512278	50	6.7	50	80	4	325	28	19	29	23	1.98
69511948--69512286	148	2.3	146	81	6	380	28	19	29	23	1.98
69514391--69514555	42	3.9	42	73	7	138	29	15	25	30	1.96
69514809--69514859	25	2.0	25	100	0	102	37	7	11	43	1.71
69521531--69521697	46	3.6	46	81	3	165	29	18	28	23	1.98
69521622--69521846	93	2.4	96	82	8	275	24	18	28	28	1.98
69523784--69523841	4	13.5	4	85	10	71	75	0	22	1	0.89
69523791--69523843	18	3.0	18	86	2	81	75	0	20	3	0.96
69523781--69523842	22	3.0	22	79	15	87	74	0	24	1	0.91
69526799--69526833	17	2.1	17	100	0	70	28	22	28	20	1.98
69527592--69527624	14	2.4	14	94	0	57	45	6	3	45	1.43
69527544--69527668	62	2.0	62	93	0	214	36	5	8	48	1.58
69527606--69527697	48	1.9	48	93	0	157	33	5	10	50	1.61
69528029--69528117	33	2.7	32	74	5	79	23	10	41	24	1.85
69528878--69528912	14	2.5	14	90	0	52	42	5	17	34	1.73
69531097--69531163	31	2.1	32	81	8	75	22	29	29	17	1.97
69547384--69547565	78	2.3	81	84	4	237	26	26	20	25	1.99
69547382--69547565	40	4.7	40	80	8	216	27	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69551358--69551515	40	4.0	40	94	0	271	22	20	29	27	1.98
69553365--69553402	20	2.0	20	89	5	60	31	18	23	26	1.97
69556591--69556660	27	2.5	28	90	2	115	28	12	28	30	1.93
69556591--69556672	27	3.0	27	82	8	69	29	14	25	30	1.95
69562138--69562223	39	2.2	39	89	4	129	20	22	27	29	1.99
69572206--69572321	3	38.7	3	96	3	216	66	0	0	32	0.98
69573228--69573267	20	2.0	21	90	5	64	22	7	10	60	1.54
69573934--69574682	143	5.3	142	81	4	710	28	21	19	31	1.97
69574174--69574396	44	4.8	44	65	11	104	28	21	19	30	1.97
69574757--69574872	44	2.6	45	79	2	135	32	17	17	32	1.93
69575715--69575831	58	2.0	58	79	0	126	11	24	23	40	1.88
69582339--69582421	3	27.3	3	97	2	157	66	0	1	32	1.00
69587002--69587066	29	2.2	29	83	8	78	27	16	4	50	1.65
69607892--69608074	40	4.7	40	80	11	200	25	21	26	25	2.00
69607896--69608072	78	2.3	79	83	7	218	26	21	26	25	1.99
69610024--69610126	29	3.6	29	87	0	143	24	32	15	28	1.95
69609995--69610126	58	2.3	58	77	2	131	24	34	15	25	1.95
69617981--69618082	29	3.6	29	87	2	143	24	32	15	27	1.96
69627020--69627200	39	4.6	39	85	7	235	24	21	27	25	1.99
69627020--69627198	77	2.3	78	86	5	238	25	21	27	25	2.00
69629772--69629853	43	1.9	42	90	2	128	34	25	12	28	1.92
69629978--69630044	35	1.9	35	87	0	98	49	8	2	38	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69641174--69641229	19	2.9	19	100	0	112	37	16	16	30	1.90
69641670--69641794	46	2.7	46	86	9	157	29	20	27	23	1.98
69641621--69641842	47	4.7	47	77	11	181	29	20	27	22	1.98
69642763--69642842	42	2.0	41	85	9	110	23	23	38	13	1.91
69647948--69648157	103	2.0	103	95	0	375	22	10	28	39	1.86
69649326--69649350	13	1.9	13	100	0	50	20	40	24	16	1.91
69649875--69649908	12	2.8	12	90	0	50	41	2	0	55	1.15
69651953--69652042	28	3.3	28	87	4	130	18	20	23	37	1.94
69651951--69652066	27	4.3	26	86	5	133	18	19	22	38	1.93
69651951--69652066	54	2.1	54	87	3	162	18	19	22	38	1.93
69651965--69652087	53	2.3	54	79	10	135	20	22	20	36	1.95
69655579--69655730	76	2.0	76	98	0	295	25	25	19	30	1.98
69661005--69661084	28	2.9	28	87	3	101	21	23	18	36	1.95
69661003--69661127	27	4.7	26	79	8	108	20	24	19	36	1.95
69672732--69672898	40	4.2	40	81	2	176	24	27	22	25	2.00
69672748--69672898	80	1.9	79	83	6	198	23	27	22	25	2.00
69680729--69680895	40	4.2	40	81	2	176	24	27	22	25	2.00
69680745--69680895	80	1.9	79	83	6	198	23	27	22	25	2.00
69685583--69685749	40	4.2	40	81	2	176	24	27	22	25	2.00
69685599--69685749	80	1.9	79	83	6	198	23	27	22	25	2.00
69693516--69693637	50	2.5	49	82	5	142	27	22	14	35	1.93
69704508--69704586	31	2.5	31	89	0	122	26	24	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69704615--69704697	42	2.0	42	85	0	112	33	20	14	31	1.93
69704839--69704968	26	5.2	26	84	3	162	29	22	20	28	1.98
69704839--69704968	52	2.6	51	90	8	198	29	22	20	28	1.98
69705888--69706167	27	10.3	27	73	10	176	32	8	18	39	1.82
69705950--69706158	81	2.6	81	85	5	262	30	8	20	40	1.82
69705894--69706158	54	4.9	53	74	9	194	31	8	19	40	1.82
69709470--69709581	32	3.5	32	81	0	125	24	24	35	16	1.94
69710319--69710369	20	2.7	19	82	14	54	41	0	21	37	1.54
69711014--69711285	49	5.7	49	78	6	227	28	18	27	25	1.98
69711051--69711234	98	1.9	98	85	3	255	29	19	27	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427